Rroxscaffold_2G00113720

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0015662
Physical Location & Seq
Forward (+)
39459889 .. 39461758
1870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00113720.1

Sequence Viewer

Length: 966 bp
ATGGCCTCTGCACCATCATTGTTTGTTACTGCGACACTTCTAGTGTTCATCTTTGGGTGCTGCAATACTGTAAATGCTCAGCTCTCTCCCACCTTCTACTCAAAAACTTGCCCAACTCTTCTAAGCGTAGTTCGCACCGCCATGAATCAAGCTGTTACTAAGGAGCCTCGCATGGGTGCCTCCATTCTTCGCTTGTTCTTCCACGACTGCTTTGTCAATGGTTGCGACGCTTCGATTCTGTTGGATGACACTGCTTCCTTCACAGGCGAGAAGAATGCGGGCCCAAACCAGAACTCTGTCAGGGGTTTCGAAGTAATTGACACCATAAAAACTAGCGTGGAAGCAGCTTGTAATGCTACAGTTTCTTGTGCAGATATTTTAGCTCTTGCAGCACGAGATGGAGTTGTCTTGCTTGGAGGAACATCATGGACTGTACCACTGGGCCGCAGAGATGCAAGAACGGCAAGCCGAAGCGCCGCCAACAGCAACCTCCCATCTCCATTCGCAGACCTCGCAGCTCTCATCTCAAGCTTCACTGCCAAAGGCTTAACCGCTAATGACATGACCGTGCTCTCTGGGGCTCACACAATAGGCCAAGCACAGTGTTCTTCCTTCAGGACTCGCATCTACAACGAGGCCAACATCGATCCAGGCTTTGCCACCACTCGCAAGGCTAGTTGCCCGGCCTCGACTAGTTCTGGTAGTACTAACTTGGCTCCCTTCGACACGACGCCAAACGGCTTTGATAACGACTACTACAAGGCGCTTGTGGGACGTCGTGGGCTTCTTCACTCCGATCAGCAGTTGTTTAATAATGGATCTCAGGATGCATTGGTTAGAACTTATAGTACCAACGTTGCTGCTTTTAACAGGGATTTTGCTGCGGCCATGGTGAAGATGAGTCGGATTAGTCCTCTGCTGGGAACCAACGGAGAGATCAGGAAAAACTGCAGACTGGTGAATTAA

Protein Analysis

321

Amino Acids

34.06

Weight (kDa)

8.7

Isoelectric Point (pI)

33.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 44 - 285 1.5e-85 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015662)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g27610
malus_domestica MD11G1004100.v1.1
prunus_persica Prupe.3G115300_v2.0.a1
pyrus_communis pycom09g15420
rosa_chinensis RchiOBHm_Chr2g0130331
rosa_laevigata RLG00000019134
rosa_multiflora Rmu_sc0001336.1_g000069 Rmu_sc0006388.1_g000002
rosa_roxburghii Rroxscaffold_2G00113720 Rroxscaffold_2G00114030
rosa_rugosa Rorug02G0291500
rosa_samantha Rh2AG343200 Rh2BG351400 Rh2DG369500
rosa_wichuraiana Rw2G027600 Rw2G027610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 212
AatII GACGTC 1 cut(s) 778
AccB1I GGYRCC 1 cut(s) 176
AciI CCGC 6 cut(s) 138, 278, 445, 477, 552, 884
AclI AACGTT 1 cut(s) 855
AclWI GGATC 2 cut(s) 641, 826
AcoI YGGCCR 1 cut(s) 885
AcuI CTGAAG 1 cut(s) 598
AcyI GRCGYC 2 cut(s) 731, 775
AfaI GTAC 3 cut(s) 435, 706, 850
AfiI CCNNNNNNNGG 2 cut(s) 173, 920
AhlI ACTAGT 1 cut(s) 692
AjnI CCWGG 1 cut(s) 649
AluBI AGCT 6 cut(s) 82, 152, 347, 383, 518, 531
AluI AGCT 6 cut(s) 82, 152, 347, 383, 518, 531
Alw21I GWGCWC 1 cut(s) 573
AlwI GGATC 2 cut(s) 641, 826
AoxI GGCC 7 cut(s) 3, 280, 442, 592, 636, 684, 885
ApaI GGGCCC 1 cut(s) 284
ApeKI GCWGC 6 cut(s) 60, 344, 389, 515, 860, 881
AspLEI GCGC 2 cut(s) 476, 766
AspS9I GGNCC 3 cut(s) 280, 281, 442
AsuC2I CCSGG 1 cut(s) 683
AsuHPI GGTGA 1 cut(s) 904
AsuII TTCGAA 1 cut(s) 309
BaeGI GKGCMC 1 cut(s) 284
BanI GGYRCC 1 cut(s) 176
BanII GRGCYC 2 cut(s) 284, 583
BauI CACGAG 1 cut(s) 393
Bbv12I GWGCWC 1 cut(s) 573
BbvI GCAGC 6 cut(s) 47, 356, 401, 527, 847, 868
BccI CCATC 3 cut(s) 22, 392, 502
BceAI ACGGC 2 cut(s) 477, 754
BcgI CGANNNNNNTGC 2 cut(s) 257, 291
BciT130I CCWGG 1 cut(s) 651
BcnI CCSGG 1 cut(s) 683
BcuI ACTAGT 1 cut(s) 692
BfaI CTAG 4 cut(s) 41, 333, 675, 693
BfmI CTRYAG 2 cut(s) 357, 949
BfoI RGCGCY 2 cut(s) 477, 767
BisI GCNGC 9 cut(s) 61, 345, 390, 445, 477, 516, 861, 882, 885
BlpI GCTNAGC 1 cut(s) 78
BlsI GCNGC 9 cut(s) 62, 346, 391, 446, 478, 517, 862, 883, 886
BmcAI AGTACT 1 cut(s) 706
Bme1390I CCNGG 2 cut(s) 651, 683
BmgT120I GGNCC 3 cut(s) 280, 281, 442
BmiI GGNNCC 5 cut(s) 165, 178, 282, 717, 925
BmrFI CCNGG 2 cut(s) 651, 683
BmrI ACTGGG 1 cut(s) 449
BmsI GCATC 3 cut(s) 442, 633, 817
BmuI ACTGGG 1 cut(s) 449
Bpu1102I GCTNAGC 1 cut(s) 78
Bpu14I TTCGAA 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 511
BpuMI CCSGG 1 cut(s) 683
Bsa29I ATCGAT 1 cut(s) 645
BsaHI GRCGYC 2 cut(s) 731, 775
BsaJI CCNNGG 1 cut(s) 888
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 920
Bse1I ACTGG 2 cut(s) 444, 960
BseBI CCWGG 1 cut(s) 651
BseCI ATCGAT 1 cut(s) 645
BseDI CCNNGG 1 cut(s) 888
BseGI GGATG 2 cut(s) 250, 832
BseLI CCNNNNNNNGG 2 cut(s) 173, 920
BseMII CTCAG 2 cut(s) 92, 836
BseNI ACTGG 2 cut(s) 444, 960
BseSI GKGCMC 1 cut(s) 284
BseXI GCAGC 6 cut(s) 47, 356, 401, 527, 847, 868
BseYI CCCAGC 1 cut(s) 919
BsgI GTGCAG 1 cut(s) 390
BshFI GGCC 7 cut(s) 5, 282, 444, 594, 638, 686, 887
BshNI GGYRCC 1 cut(s) 176
BshVI ATCGAT 1 cut(s) 645
BsiHKAI GWGCWC 1 cut(s) 573
BsiSI CCGG 1 cut(s) 683
BslFI GGGAC 1 cut(s) 786
BslI CCNNNNNNNGG 2 cut(s) 173, 920
BsmFI GGGAC 1 cut(s) 786
BsmI GAATGC 1 cut(s) 280
BsnI GGCC 7 cut(s) 5, 282, 444, 594, 638, 686, 887
Bsp119I TTCGAA 1 cut(s) 309
Bsp120I GGGCCC 1 cut(s) 280
Bsp1286I GDGCHC 3 cut(s) 284, 573, 583
Bsp143I GATC 4 cut(s) 646, 796, 818, 936
Bsp1720I GCTNAGC 1 cut(s) 78
Bsp19I CCATGG 1 cut(s) 888
BspACI CCGC 6 cut(s) 138, 278, 445, 477, 552, 884
BspANI GGCC 7 cut(s) 5, 282, 444, 594, 638, 686, 887
BspCNI CTCAG 2 cut(s) 91, 835
BspDI ATCGAT 1 cut(s) 645
BspLI GGNNCC 5 cut(s) 165, 178, 282, 717, 925
BspMAI CTGCAG 1 cut(s) 953
BspPI GGATC 2 cut(s) 641, 826
BspT104I TTCGAA 1 cut(s) 309
BspT107I GGYRCC 1 cut(s) 176
BsrI ACTGG 2 cut(s) 444, 960
BssECI CCNNGG 1 cut(s) 888
BssMI GATC 4 cut(s) 646, 796, 818, 936
BssNI GRCGYC 2 cut(s) 731, 775
BssSI CACGAG 1 cut(s) 393
BssT1I CCWWGG 1 cut(s) 888
Bst2BI CACGAG 1 cut(s) 393
Bst2UI CCWGG 1 cut(s) 651
Bst4CI ACNGT 5 cut(s) 70, 361, 433, 568, 603
Bst6I CTCTTC 1 cut(s) 123
BstACI GRCGYC 2 cut(s) 731, 775
BstBI TTCGAA 1 cut(s) 309
BstC8I GCNNGC 2 cut(s) 280, 466
BstDEI CTNAG 4 cut(s) 78, 122, 159, 822
BstDSI CCRYGG 1 cut(s) 888
BstF5I GGATG 2 cut(s) 250, 832
BstH2I RGCGCY 2 cut(s) 477, 767
BstHHI GCGC 2 cut(s) 476, 766
BstKTI GATC 4 cut(s) 649, 799, 821, 939
BstMBI GATC 4 cut(s) 646, 796, 818, 936
BstMWI GCNNNNNNNGC 5 cut(s) 132, 353, 389, 461, 512
BstNI CCWGG 1 cut(s) 651
BstSCI CCNGG 2 cut(s) 649, 681
BstSFI CTRYAG 2 cut(s) 357, 949
BstSLI GKGCMC 1 cut(s) 284
BstV1I GCAGC 6 cut(s) 47, 356, 401, 527, 847, 868
BstX2I RGATCY 1 cut(s) 818
BstYI RGATCY 1 cut(s) 818
Bsu15I ATCGAT 1 cut(s) 645
BsuRI GGCC 7 cut(s) 5, 282, 444, 594, 638, 686, 887
BsuTUI ATCGAT 1 cut(s) 645
BtgI CCRYGG 1 cut(s) 888
BtsCI GGATG 2 cut(s) 250, 832
BtsI GCAGTG 2 cut(s) 249, 534
BtsIMutI CAGTG 4 cut(s) 249, 437, 534, 608
Cac8I GCNNGC 2 cut(s) 280, 466
CfoI GCGC 2 cut(s) 476, 766
Cfr13I GGNCC 3 cut(s) 280, 281, 442
ClaI ATCGAT 1 cut(s) 645
CseI GACGC 2 cut(s) 236, 739
Csp6I GTAC 3 cut(s) 434, 705, 849
CviAII CATG 5 cut(s) 142, 172, 426, 562, 889
CviQI GTAC 3 cut(s) 434, 705, 849
DdeI CTNAG 4 cut(s) 78, 122, 159, 822
DpnI GATC 4 cut(s) 648, 798, 820, 938
DpnII GATC 4 cut(s) 646, 796, 818, 936
DrdI GACNNNNNNGTC 1 cut(s) 212
DseDI GACNNNNNNGTC 1 cut(s) 212
EaeI YGGCCR 1 cut(s) 885
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 888
Eco24I GRGCYC 2 cut(s) 284, 583
Eco57I CTGAAG 1 cut(s) 598
EcoRII CCWGG 1 cut(s) 649
EcoT14I CCWWGG 1 cut(s) 888
EcoT22I ATGCAT 1 cut(s) 832
EcoT38I GRGCYC 2 cut(s) 284, 583
ErhI CCWWGG 1 cut(s) 888
FaeI CATG 5 cut(s) 145, 175, 429, 565, 892
FaiI YATR 7 cut(s) 143, 173, 326, 427, 563, 846, 890
FaqI GGGAC 1 cut(s) 786
FatI CATG 5 cut(s) 141, 171, 425, 561, 888
FauI CCCGC 1 cut(s) 271
Fnu4HI GCNGC 9 cut(s) 61, 345, 390, 445, 477, 516, 861, 882, 885
FokI GGATG 2 cut(s) 257, 839
FriOI GRGCYC 2 cut(s) 284, 583
Fsp4HI GCNGC 9 cut(s) 61, 345, 390, 445, 477, 516, 861, 882, 885
FspBI CTAG 4 cut(s) 41, 333, 675, 693
GlaI GCGC 2 cut(s) 475, 765
GluI GCNGC 9 cut(s) 61, 345, 390, 445, 477, 516, 861, 882, 885
GsaI CCCAGC 1 cut(s) 923
HaeII RGCGCY 2 cut(s) 477, 767
HaeIII GGCC 7 cut(s) 5, 282, 444, 594, 638, 686, 887
HapII CCGG 1 cut(s) 683
HgaI GACGC 2 cut(s) 236, 739
HhaI GCGC 2 cut(s) 476, 766
Hin1I GRCGYC 2 cut(s) 731, 775
Hin1II CATG 5 cut(s) 145, 175, 429, 565, 892
Hin6I GCGC 2 cut(s) 474, 764
HinP1I GCGC 2 cut(s) 474, 764
HindIII AAGCTT 1 cut(s) 529
HinfI GANTC 4 cut(s) 145, 235, 619, 901
HpaII CCGG 1 cut(s) 683
HphI GGTGA 1 cut(s) 904
Hpy188I TCNGA 2 cut(s) 796, 906
Hpy188III TCNNGA 3 cut(s) 616, 824, 940
Hpy99I CGWCG 3 cut(s) 230, 733, 780
HpyAV CCTTC 4 cut(s) 103, 268, 622, 730
HpyCH4III ACNGT 5 cut(s) 70, 361, 433, 568, 603
HpyCH4IV ACGT 2 cut(s) 775, 855
HpyCH4V TGCA 7 cut(s) 11, 63, 371, 389, 455, 830, 951
HpyF10VI GCNNNNNNNGC 5 cut(s) 132, 353, 389, 461, 512
HpyF3I CTNAG 4 cut(s) 78, 122, 159, 822
HpySE526I ACGT 2 cut(s) 775, 855
Hsp92I GRCGYC 2 cut(s) 731, 775
Hsp92II CATG 5 cut(s) 145, 175, 429, 565, 892
HspAI GCGC 2 cut(s) 474, 764
Kzo9I GATC 4 cut(s) 646, 796, 818, 936
LmnI GCTCC 2 cut(s) 163, 721
Lsp1109I GCAGC 6 cut(s) 47, 356, 401, 527, 847, 868
LweI GCATC 3 cut(s) 442, 633, 817
MaeI CTAG 4 cut(s) 41, 333, 675, 693
MaeII ACGT 2 cut(s) 775, 855
MaeIII GTNAC 2 cut(s) 25, 154
MalI GATC 4 cut(s) 648, 798, 820, 938
MboI GATC 4 cut(s) 646, 796, 818, 936
MboII GAAGA 7 cut(s) 110, 179, 190, 283, 600, 779, 907
MflI RGATCY 1 cut(s) 818
MhlI GDGCHC 3 cut(s) 284, 573, 583
MluCI AATT 2 cut(s) 315, 961
MlyI GAGTC 2 cut(s) 613, 910
MmeI TCCRAC 2 cut(s) 222, 884
MnlI CCTC 9 cut(s) 16, 177, 190, 410, 500, 521, 628, 697, 924
Mph1103I ATGCAT 1 cut(s) 832
MseI TTAA 4 cut(s) 548, 810, 867, 964
MslI CAYNNNNRTG 2 cut(s) 140, 566
MspI CCGG 1 cut(s) 683
MspR9I CCNGG 2 cut(s) 651, 683
Mva1269I GAATGC 1 cut(s) 280
MvaI CCWGG 1 cut(s) 651
MwoI GCNNNNNNNGC 5 cut(s) 132, 353, 389, 461, 512
NciI CCSGG 1 cut(s) 683
NcoI CCATGG 1 cut(s) 888
NdeII GATC 4 cut(s) 646, 796, 818, 936
NlaIII CATG 5 cut(s) 145, 175, 429, 565, 892
NlaIV GGNNCC 5 cut(s) 165, 178, 282, 717, 925
NsiI ATGCAT 1 cut(s) 832
NspV TTCGAA 1 cut(s) 309
PctI GAATGC 1 cut(s) 280
PfeI GAWTC 2 cut(s) 145, 235
PkrI GCNGC 9 cut(s) 62, 346, 391, 446, 478, 517, 862, 883, 886
PleI GAGTC 2 cut(s) 613, 909
PpsI GAGTC 2 cut(s) 613, 909
Psp1406I AACGTT 1 cut(s) 855
Psp6I CCWGG 1 cut(s) 649
PspFI CCCAGC 1 cut(s) 919
PspGI CCWGG 1 cut(s) 649
PspN4I GGNNCC 5 cut(s) 165, 178, 282, 717, 925
PspOMI GGGCCC 1 cut(s) 280
PspPI GGNCC 3 cut(s) 280, 281, 442
PsrI GAACNNNNNNTAC 2 cut(s) 832, 864
PstI CTGCAG 1 cut(s) 953
PsuI RGATCY 1 cut(s) 818
RsaI GTAC 3 cut(s) 435, 706, 850
RsaNI GTAC 3 cut(s) 434, 705, 849
RseI CAYNNNNRTG 2 cut(s) 140, 566
SaqAI TTAA 4 cut(s) 548, 810, 867, 964
SatI GCNGC 9 cut(s) 61, 345, 390, 445, 477, 516, 861, 882, 885
Sau3AI GATC 4 cut(s) 646, 796, 818, 936
Sau96I GGNCC 3 cut(s) 280, 281, 442
ScaI AGTACT 1 cut(s) 706
SchI GAGTC 2 cut(s) 613, 910
ScrFI CCNGG 2 cut(s) 651, 683
SduI GDGCHC 3 cut(s) 284, 573, 583
SfaNI GCATC 3 cut(s) 442, 633, 817
SfcI CTRYAG 2 cut(s) 357, 949
SfuI TTCGAA 1 cut(s) 309
SmiMI CAYNNNNRTG 2 cut(s) 140, 566
SmlI CTYRAG 1 cut(s) 526
SmoI CTYRAG 1 cut(s) 526
SpeI ACTAGT 1 cut(s) 692
Sse9I AATT 2 cut(s) 315, 961
SsiI CCGC 6 cut(s) 138, 278, 445, 477, 552, 884
SspMI CTAG 4 cut(s) 41, 333, 675, 693
StyD4I CCNGG 2 cut(s) 649, 681
StyI CCWWGG 1 cut(s) 888
TaaI ACNGT 5 cut(s) 70, 361, 433, 568, 603
TaiI ACGT 2 cut(s) 778, 858
TaqI TCGA 5 cut(s) 233, 309, 645, 689, 723
TasI AATT 2 cut(s) 315, 961
TatI WGTACW 1 cut(s) 704
TauI GCSGC 3 cut(s) 447, 479, 887
TfiI GAWTC 2 cut(s) 145, 235
Tru1I TTAA 4 cut(s) 548, 810, 867, 964
Tru9I TTAA 4 cut(s) 548, 810, 867, 964
TscAI CASTG 4 cut(s) 256, 444, 541, 608
TseI GCWGC 6 cut(s) 60, 344, 389, 515, 860, 881
TspDTI ATGAA 2 cut(s) 37, 158
TspGWI ACGGA 1 cut(s) 945
TspRI CASTG 4 cut(s) 256, 444, 541, 608
XspI CTAG 4 cut(s) 41, 333, 675, 693
ZraI GACGTC 1 cut(s) 776
ZrmI AGTACT 1 cut(s) 706
Zsp2I ATGCAT 1 cut(s) 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.