Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0015662

Physical Location & Seq

Genomic Coordinates Forward (+)

52391296 .. 52392682

Gene Structure 1387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG369500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCTTCTGCACCATCATTGTTTGTTACTGCGACACTTCTAGTGTTCATCTTTGGGTGCTGCAGTACTGTAAATGCTCAGCTCTCTCCCACCTTCTACTCAAAAACTTGCCCAACTCTTCTAAGCGTAGTTCGCACCGCCATGAATCAAGCTGTTACTAAGGAGCCTCGCATGGGTGCCTCCATTCTTCGCTTGTTCTTCCACGACTGCTTTGTCAATGGTTGCGACGCTTCGATTCTCGTAGAAGCAGCTTGTAATGCTACAGTTTCTTGTGCAGATATTTTAGCTCTTGCAGCACGAGATGGAGTTGTCTTGCTTGGAGGAACATCATGGACTGTACCACTGGGCCGCAGAGATGCAAGAACGGCAAGCCAAAGCGCCGCCAACAGCAACCTCCCATCTCCATTCGCAGACCTCGCAGCTCTCATCTCAAGCTTCACTGCCAAAGGCTTAACCGCTAAGGACATGACCGTGCTCTCTGGGGCTCACACAATAGGCCAAGCACAGTGTTCTTCCTTCAGGGCTCGCATCTACAACGAGACCAACATCGACCCAGGCTTTGCCACCACTCGCAAGGCTAGTTGCCCGGCTAGTTCTGGTAATACTAACTTGGCTCCCTTCGACACGACGCCAAACGGCTTTGATAACGACTACTACAAGGCGCTTGTGGGACGTCGTGGACTTCTTCACTCCGATCAGCAGTTGTTTAATAATGGATCTCAGGATGCGTTGGTTAGAACTTATAGTAACAACGTTGCTGCGTTTAACAGGGATTTTGCTGCGGCCATGGTGAAGATGAGTCGGATTAGTCCTCTGCTGGGAACCAACGGAGAGATCAGGAAAAACTGCAGACTGGTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010087 GO:0010089 GO:0012505 GO:0019222 GO:0019438 GO:0019748 GO:0030312 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048046 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0071944 GO:1900376 GO:1900378 GO:1901141 GO:1901360 GO:1901362 GO:1901428 GO:1901430 GO:1901576 GO:2000762

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

287

Amino Acids

30.48

Weight (kDa)

8.98

Isoelectric Point (pI)

38.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	44 - 81	2e-11	Peroxidase
peroxidase	PF00141	81 - 251	4.8e-58	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015662)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27610
malus_domestica	MD11G1004100.v1.1
prunus_persica	Prupe.3G115300_v2.0.a1
pyrus_communis	pycom09g15420
rosa_chinensis	RchiOBHm_Chr2g0130331
rosa_laevigata	RLG00000019134
rosa_multiflora	Rmu_sc0001336.1_g000069 Rmu_sc0006388.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113720 Rroxscaffold_2G00114030
rosa_rugosa	Rorug02G0291500
rosa_samantha	Rh2AG343200 Rh2BG351400 Rh2DG369500
rosa_wichuraiana	Rw2G027600 Rw2G027610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	212
AatII	GACGTC	1 cut(s)	676
AccB1I	GGYRCC	1 cut(s)	176
AciI	CCGC	5 cut(s)	138, 349, 381, 456, 782
AclI	AACGTT	1 cut(s)	753
AclWI	GGATC	1 cut(s)	724
AcoI	YGGCCR	1 cut(s)	783
AcuI	CTGAAG	1 cut(s)	502
AcyI	GRCGYC	2 cut(s)	629, 673
AfaI	GTAC	2 cut(s)	67, 339
AfiI	CCNNNNNNNGG	2 cut(s)	173, 818
AjnI	CCWGG	1 cut(s)	553
AluBI	AGCT	6 cut(s)	82, 152, 251, 287, 422, 435
AluI	AGCT	6 cut(s)	82, 152, 251, 287, 422, 435
Alw21I	GWGCWC	1 cut(s)	477
Alw26I	GTCTC	1 cut(s)	533
AlwI	GGATC	1 cut(s)	724
AoxI	GGCC	3 cut(s)	346, 496, 783
ApeKI	GCWGC	6 cut(s)	60, 248, 293, 419, 758, 779
ArsI	GACNNNNNNTTYG	2 cut(s)	542, 574
AspLEI	GCGC	2 cut(s)	380, 664
AspS9I	GGNCC	1 cut(s)	346
AsuC2I	CCSGG	1 cut(s)	587
AsuHPI	GGTGA	1 cut(s)	802
BanI	GGYRCC	1 cut(s)	176
BanII	GRGCYC	2 cut(s)	487, 526
BauI	CACGAG	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	477
BbvI	GCAGC	6 cut(s)	47, 260, 305, 431, 745, 766
BccI	CCATC	3 cut(s)	22, 296, 406
BceAI	ACGGC	2 cut(s)	381, 652
BciT130I	CCWGG	1 cut(s)	555
BcnI	CCSGG	1 cut(s)	587
BcoDI	GTCTC	1 cut(s)	533
BfaI	CTAG	3 cut(s)	41, 579, 591
BfmI	CTRYAG	3 cut(s)	61, 261, 847
BfoI	RGCGCY	2 cut(s)	381, 665
BisI	GCNGC	9 cut(s)	61, 249, 294, 349, 381, 420, 759, 780, 783
BlpI	GCTNAGC	1 cut(s)	78
BlsI	GCNGC	9 cut(s)	62, 250, 295, 350, 382, 421, 760, 781, 784
BmcAI	AGTACT	1 cut(s)	67
Bme1390I	CCNGG	2 cut(s)	555, 587
BmgT120I	GGNCC	1 cut(s)	346
BmiI	GGNNCC	4 cut(s)	165, 178, 615, 823
BmrFI	CCNGG	2 cut(s)	555, 587
BmrI	ACTGGG	1 cut(s)	353
BmsI	GCATC	3 cut(s)	346, 537, 715
BmuI	ACTGGG	1 cut(s)	353
Bpu10I	CCTNAGC	1 cut(s)	459
Bpu1102I	GCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	415
BpuMI	CCSGG	1 cut(s)	587
BsaHI	GRCGYC	2 cut(s)	629, 673
BsaI	GGTCTC	1 cut(s)	533
BsaJI	CCNNGG	2 cut(s)	553, 786
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 818
Bse1I	ACTGG	2 cut(s)	348, 858
BseBI	CCWGG	1 cut(s)	555
BseDI	CCNNGG	2 cut(s)	553, 786
BseGI	GGATG	1 cut(s)	730
BseLI	CCNNNNNNNGG	2 cut(s)	173, 818
BseMII	CTCAG	2 cut(s)	92, 734
BseNI	ACTGG	2 cut(s)	348, 858
BseXI	GCAGC	6 cut(s)	47, 260, 305, 431, 745, 766
BseYI	CCCAGC	1 cut(s)	817
BsgI	GTGCAG	1 cut(s)	294
BshFI	GGCC	3 cut(s)	348, 498, 785
BshNI	GGYRCC	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	477
BsiSI	CCGG	1 cut(s)	587
BslFI	GGGAC	1 cut(s)	684
BslI	CCNNNNNNNGG	2 cut(s)	173, 818
BsmAI	GTCTC	1 cut(s)	533
BsmFI	GGGAC	1 cut(s)	684
BsnI	GGCC	3 cut(s)	348, 498, 785
Bso31I	GGTCTC	1 cut(s)	533
Bsp1286I	GDGCHC	3 cut(s)	477, 487, 526
Bsp143I	GATC	3 cut(s)	694, 716, 834
Bsp1720I	GCTNAGC	1 cut(s)	78
Bsp19I	CCATGG	1 cut(s)	786
BspACI	CCGC	5 cut(s)	138, 349, 381, 456, 782
BspANI	GGCC	3 cut(s)	348, 498, 785
BspCNI	CTCAG	2 cut(s)	91, 733
BspLI	GGNNCC	4 cut(s)	165, 178, 615, 823
BspMAI	CTGCAG	2 cut(s)	65, 851
BspPI	GGATC	1 cut(s)	724
BspT107I	GGYRCC	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	533
BsrI	ACTGG	2 cut(s)	348, 858
BssECI	CCNNGG	2 cut(s)	553, 786
BssMI	GATC	3 cut(s)	694, 716, 834
BssNI	GRCGYC	2 cut(s)	629, 673
BssSI	CACGAG	1 cut(s)	297
BssT1I	CCWWGG	1 cut(s)	786
Bst2BI	CACGAG	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	555
Bst4CI	ACNGT	5 cut(s)	70, 265, 337, 472, 507
Bst6I	CTCTTC	1 cut(s)	123
BstACI	GRCGYC	2 cut(s)	629, 673
BstC8I	GCNNGC	2 cut(s)	370, 526
BstDEI	CTNAG	5 cut(s)	78, 122, 159, 459, 720
BstDSI	CCRYGG	1 cut(s)	786
BstF5I	GGATG	1 cut(s)	730
BstH2I	RGCGCY	2 cut(s)	381, 665
BstHHI	GCGC	2 cut(s)	380, 664
BstKTI	GATC	3 cut(s)	697, 719, 837
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	3 cut(s)	694, 716, 834
BstMWI	GCNNNNNNNGC	5 cut(s)	132, 257, 293, 365, 416
BstNI	CCWGG	1 cut(s)	555
BstSCI	CCNGG	2 cut(s)	553, 585
BstSFI	CTRYAG	3 cut(s)	61, 261, 847
BstV1I	GCAGC	6 cut(s)	47, 260, 305, 431, 745, 766
BstX2I	RGATCY	1 cut(s)	716
BstYI	RGATCY	1 cut(s)	716
BsuRI	GGCC	3 cut(s)	348, 498, 785
BtgI	CCRYGG	1 cut(s)	786
BtsCI	GGATG	1 cut(s)	730
BtsI	GCAGTG	1 cut(s)	438
BtsIMutI	CAGTG	3 cut(s)	341, 438, 512
Cac8I	GCNNGC	2 cut(s)	370, 526
CfoI	GCGC	2 cut(s)	380, 664
Cfr13I	GGNCC	1 cut(s)	346
CseI	GACGC	2 cut(s)	236, 637
Csp6I	GTAC	2 cut(s)	66, 338
CviAII	CATG	5 cut(s)	142, 172, 330, 466, 787
CviQI	GTAC	2 cut(s)	66, 338
DdeI	CTNAG	5 cut(s)	78, 122, 159, 459, 720
DpnI	GATC	3 cut(s)	696, 718, 836
DpnII	GATC	3 cut(s)	694, 716, 834
DrdI	GACNNNNNNGTC	1 cut(s)	212
DseDI	GACNNNNNNGTC	1 cut(s)	212
EaeI	YGGCCR	1 cut(s)	783
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	786
Eco24I	GRGCYC	2 cut(s)	487, 526
Eco31I	GGTCTC	1 cut(s)	533
Eco57I	CTGAAG	1 cut(s)	502
EcoRII	CCWGG	1 cut(s)	553
EcoT14I	CCWWGG	1 cut(s)	786
EcoT38I	GRGCYC	2 cut(s)	487, 526
ErhI	CCWWGG	1 cut(s)	786
FaeI	CATG	5 cut(s)	145, 175, 333, 469, 790
FaiI	YATR	6 cut(s)	143, 173, 331, 467, 744, 788
FaqI	GGGAC	1 cut(s)	684
FatI	CATG	5 cut(s)	141, 171, 329, 465, 786
Fnu4HI	GCNGC	9 cut(s)	61, 249, 294, 349, 381, 420, 759, 780, 783
FokI	GGATG	1 cut(s)	737
FriOI	GRGCYC	2 cut(s)	487, 526
Fsp4HI	GCNGC	9 cut(s)	61, 249, 294, 349, 381, 420, 759, 780, 783
FspBI	CTAG	3 cut(s)	41, 579, 591
GlaI	GCGC	2 cut(s)	379, 663
GluI	GCNGC	9 cut(s)	61, 249, 294, 349, 381, 420, 759, 780, 783
GsaI	CCCAGC	1 cut(s)	821
HaeII	RGCGCY	2 cut(s)	381, 665
HaeIII	GGCC	3 cut(s)	348, 498, 785
HapII	CCGG	1 cut(s)	587
HgaI	GACGC	2 cut(s)	236, 637
HhaI	GCGC	2 cut(s)	380, 664
Hin1I	GRCGYC	2 cut(s)	629, 673
Hin1II	CATG	5 cut(s)	145, 175, 333, 469, 790
Hin6I	GCGC	2 cut(s)	378, 662
HinP1I	GCGC	2 cut(s)	378, 662
HindIII	AAGCTT	1 cut(s)	433
HinfI	GANTC	3 cut(s)	145, 235, 799
HpaII	CCGG	1 cut(s)	587
HphI	GGTGA	1 cut(s)	802
Hpy166II	GTNNAC	1 cut(s)	680
Hpy188I	TCNGA	2 cut(s)	694, 804
Hpy188III	TCNNGA	2 cut(s)	722, 838
Hpy8I	GTNNAC	1 cut(s)	680
Hpy99I	CGWCG	3 cut(s)	230, 631, 678
HpyAV	CCTTC	3 cut(s)	103, 526, 628
HpyCH4III	ACNGT	5 cut(s)	70, 265, 337, 472, 507
HpyCH4IV	ACGT	2 cut(s)	673, 753
HpyCH4V	TGCA	6 cut(s)	11, 63, 275, 293, 359, 849
HpyF10VI	GCNNNNNNNGC	5 cut(s)	132, 257, 293, 365, 416
HpyF3I	CTNAG	5 cut(s)	78, 122, 159, 459, 720
HpySE526I	ACGT	2 cut(s)	673, 753
Hsp92I	GRCGYC	2 cut(s)	629, 673
Hsp92II	CATG	5 cut(s)	145, 175, 333, 469, 790
HspAI	GCGC	2 cut(s)	378, 662
Kzo9I	GATC	3 cut(s)	694, 716, 834
LmnI	GCTCC	2 cut(s)	163, 619
Lsp1109I	GCAGC	6 cut(s)	47, 260, 305, 431, 745, 766
LweI	GCATC	3 cut(s)	346, 537, 715
MaeI	CTAG	3 cut(s)	41, 579, 591
MaeII	ACGT	2 cut(s)	673, 753
MaeIII	GTNAC	3 cut(s)	25, 154, 746
MalI	GATC	3 cut(s)	696, 718, 836
MboI	GATC	3 cut(s)	694, 716, 834
MboII	GAAGA	6 cut(s)	110, 179, 190, 504, 677, 805
MflI	RGATCY	1 cut(s)	716
MhlI	GDGCHC	3 cut(s)	477, 487, 526
MluCI	AATT	1 cut(s)	859
MlyI	GAGTC	1 cut(s)	808
MmeI	TCCRAC	1 cut(s)	782
MnlI	CCTC	6 cut(s)	177, 190, 314, 404, 425, 822
MseI	TTAA	4 cut(s)	452, 708, 765, 862
MslI	CAYNNNNRTG	2 cut(s)	140, 470
MspI	CCGG	1 cut(s)	587
MspR9I	CCNGG	2 cut(s)	555, 587
MvaI	CCWGG	1 cut(s)	555
MwoI	GCNNNNNNNGC	5 cut(s)	132, 257, 293, 365, 416
NciI	CCSGG	1 cut(s)	587
NcoI	CCATGG	1 cut(s)	786
NdeII	GATC	3 cut(s)	694, 716, 834
NlaIII	CATG	5 cut(s)	145, 175, 333, 469, 790
NlaIV	GGNNCC	4 cut(s)	165, 178, 615, 823
PfeI	GAWTC	2 cut(s)	145, 235
PkrI	GCNGC	9 cut(s)	62, 250, 295, 350, 382, 421, 760, 781, 784
PleI	GAGTC	1 cut(s)	807
PpsI	GAGTC	1 cut(s)	807
Psp1406I	AACGTT	1 cut(s)	753
Psp6I	CCWGG	1 cut(s)	553
PspFI	CCCAGC	1 cut(s)	817
PspGI	CCWGG	1 cut(s)	553
PspN4I	GGNNCC	4 cut(s)	165, 178, 615, 823
PspPI	GGNCC	1 cut(s)	346
PstI	CTGCAG	2 cut(s)	65, 851
PsuI	RGATCY	1 cut(s)	716
RsaI	GTAC	2 cut(s)	67, 339
RsaNI	GTAC	2 cut(s)	66, 338
RseI	CAYNNNNRTG	2 cut(s)	140, 470
SaqAI	TTAA	4 cut(s)	452, 708, 765, 862
SatI	GCNGC	9 cut(s)	61, 249, 294, 349, 381, 420, 759, 780, 783
Sau3AI	GATC	3 cut(s)	694, 716, 834
Sau96I	GGNCC	1 cut(s)	346
ScaI	AGTACT	1 cut(s)	67
SchI	GAGTC	1 cut(s)	808
ScrFI	CCNGG	2 cut(s)	555, 587
SduI	GDGCHC	3 cut(s)	477, 487, 526
SfaNI	GCATC	3 cut(s)	346, 537, 715
SfcI	CTRYAG	3 cut(s)	61, 261, 847
SmiMI	CAYNNNNRTG	2 cut(s)	140, 470
SmlI	CTYRAG	1 cut(s)	430
SmoI	CTYRAG	1 cut(s)	430
Sse9I	AATT	1 cut(s)	859
SsiI	CCGC	5 cut(s)	138, 349, 381, 456, 782
SspMI	CTAG	3 cut(s)	41, 579, 591
StyD4I	CCNGG	2 cut(s)	553, 585
StyI	CCWWGG	1 cut(s)	786
TaaI	ACNGT	5 cut(s)	70, 265, 337, 472, 507
TaiI	ACGT	2 cut(s)	676, 756
TaqI	TCGA	3 cut(s)	233, 549, 621
TasI	AATT	1 cut(s)	859
TatI	WGTACW	1 cut(s)	65
TauI	GCSGC	3 cut(s)	351, 383, 785
TfiI	GAWTC	2 cut(s)	145, 235
Tru1I	TTAA	4 cut(s)	452, 708, 765, 862
Tru9I	TTAA	4 cut(s)	452, 708, 765, 862
TscAI	CASTG	3 cut(s)	348, 445, 512
TseI	GCWGC	6 cut(s)	60, 248, 293, 419, 758, 779
TspDTI	ATGAA	2 cut(s)	37, 158
TspGWI	ACGGA	1 cut(s)	843
TspRI	CASTG	3 cut(s)	348, 445, 512
XspI	CTAG	3 cut(s)	41, 579, 591
ZraI	GACGTC	1 cut(s)	674
ZrmI	AGTACT	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.