FvH4_6g31670

Protein disulfide isomerase-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
24766413 .. 24771267
4855 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31670.t1

Sequence Viewer

Length: 1596 bp
ATGTTTAGACCAAAACCCACATCAAGATTCATCCTTTTAGCCCTCACCCTTCTCCTACTAGCCAACTTCATAGCTTCAATCACAGCCACTACTGAAAGTGAAGACAGTGAATTGGAGGAGCTACTAGCATTGGATGATGAAGTGGAACAAGAAGAAGAGCAAGGAGGGGTTTCAAATGTGAGGTCTTCAGAGGCAGAGGTGTTAACCAAAGCCCAAAGGATTGTTCTTGAGCTCAACCATGACAATACCAAGAGGGTGATTGAGAAGAATGAGTTTGTTCTGGTTCTTGGGTATGCTCCTTGGTGTGCCAGAAGTGCTGAGCTCATGCCTCAATTTGCTGAGGCCGCAACTTCACTCAGTGAATTGGGGAGTCCCCTTCTGATGGCTAAGCTTGATGGAGAGAGGTATCCGAAAACGGCGTCGTTGCTTGAGATCAAAGGGTTCCCTACTCTGCTTCTGTTTGTCAATGGCACGTCTCAAGTGTACACTGGTGGATTTTCTGCGGAAGAAATAGTGATATGGGCAAGGAAGAAGACCGGTGAGCCTGTTATTAGGATAAGCTCAGTGCCAGCTGCAAAGGAGTTTCTCAAGAGGCACAATATATTTGTTGTTGGTTTGTTTGAAAAGTTTGAGGGGCCTCACTATAAAGAATTTGTAAAAGCAGCAACTGCTGATAATGCAATCCAGTTCGTAGAAGTAAGCAACATTGATGTTGCCAATGTTCTCTTTCCCAATGTAAAACAAGTTAATCTTTTCCTTGGAATTGTGAAAAGTGAGGCTGAAAGATACACTGCATATGATGGGACATTTGAGATGGAGCAAATATTGAAGTTCTTGGACTATAACAAGTTTCCATTAGTTAACAGACTGACTGAATCAAATTCTGCCACAGTTTACTCCAGCCCTCTTAAACTTCAGGTCATTGTCTTTGCAGAAGAAGATGAATTCAAGAAACTTCTGGAGCCTCTTCAGGATGTTGCTCGACAGTTCAAGTCAGAGATAATGTTTATTTATATAGACATCACAGATGAAAACCTTGCCAAGCCTTACTTAACATTATTTGGGCTAGAAGAAGCAGAGAGCACTGTGGTGGTTGCTTTTGATGTCAGAGTCAACTCTAAATATCTATTAGAATCAAATCCAACACCAAGCAATATAAAGGAGTTCTGCTCGGGGCTTTTGCATGGCACTCTGTCTCCATACTTCAAATCACAACCAATACCTAATAACACAAATGAAACAGTCCATGTCGCCGTTGGAAAGACATTTGATGACTTGGTTTTGAATAACAACAAGAATGTTCTACTAGAGGTGTTCACACCCTGGTGCATCACATGTGAGACCACTAGCAAGCAAGTTGAGAAGTTGGCTAAGCATTTCAAAAGCTTGGATAATTTATTCTTCGCAAAAATTGATGCTTCTGTAAATGAACATCCAAAACTGAAAGTAGATGACTATCCAACACTCTTATTTTACACAGCCAATGATAAAGAGGATCCGATCAAACTTTCTACAAAAACCAGCTTGAAGGACCTGGCGACATCAATCAACAAACATGTGAAAGCCAAATACGAAGTTGCTAAAGATGAACTATAG

Protein Analysis

532

Amino Acids

59.73

Weight (kDa)

5.08

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin PF00085 75 - 174 8.3e-14 Thioredoxin
Thioredoxin_6 PF13848 207 - 391 5.9e-17 Thioredoxin-like domain
Thioredoxin PF00085 416 - 515 2.5e-12 Thioredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16110
fragaria_vesca FvH4_6g31670
malus_domestica MD09G1209900.v1.1 MD17G1191800.v1.1
prunus_persica Prupe.3G067900_v2.0.a1
pyrus_communis pycom17g19880
rosa_chinensis RchiOBHm_Chr2g0138751
rosa_laevigata RLG00000019758
rosa_multiflora Rmu_sc0006243.1_g000002
rosa_roxburghii Rroxscaffold_2G00105970
rosa_rugosa Rorug02G0352600
rosa_samantha Rh2AG402200 Rh2BG405400 Rh2CG388400 Rh2DG422400
rosa_wichuraiana Rw2G032700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 345, 503
AclWI GGATC 2 cut(s) 1490, 1503
AcsI RAATTY 3 cut(s) 650, 880, 944
AcuI CTGAAG 3 cut(s) 171, 899, 953
AcyI GRCGYC 1 cut(s) 419
AdeI CACNNNGTG 1 cut(s) 359
AfaI GTAC 1 cut(s) 485
AfiI CCNNNNNNNGG 1 cut(s) 382
AflIII ACRYGT 2 cut(s) 1334, 1555
AgeI ACCGGT 1 cut(s) 536
AjiI CACGTC 1 cut(s) 474
AjnI CCWGG 2 cut(s) 1322, 1533
AjuI GAANNNNNNNTTGG 2 cut(s) 207, 239
AleI CACNNNNGTG 2 cut(s) 1088, 1324
AluBI AGCT 9 cut(s) 74, 121, 232, 322, 391, 561, 572, 1386, 1524
AluI AGCT 9 cut(s) 74, 121, 232, 322, 391, 561, 572, 1386, 1524
Alw21I GWGCWC 3 cut(s) 234, 324, 1085
Alw26I GTCTC 3 cut(s) 480, 1200, 1334
AlwI GGATC 2 cut(s) 1490, 1503
AlwNI CAGNNNCTG 1 cut(s) 668
Ama87I CYCGRG 1 cut(s) 1171
AoxI GGCC 2 cut(s) 342, 635
ApeKI GCWGC 2 cut(s) 572, 662
ApoI RAATTY 3 cut(s) 650, 880, 944
ArsI GACNNNNNNTTYG 4 cut(s) 167, 199, 404, 436
AsiGI ACCGGT 1 cut(s) 536
AspS9I GGNCC 2 cut(s) 635, 1531
AsuHPI GGTGA 3 cut(s) 37, 268, 551
AvaI CYCGRG 1 cut(s) 1171
AvaII GGWCC 1 cut(s) 1531
BamHI GGATCC 1 cut(s) 1495
BanII GRGCYC 2 cut(s) 234, 324
BbsI GAAGAC 3 cut(s) 108, 177, 539
Bbv12I GWGCWC 3 cut(s) 234, 324, 1085
BbvCI CCTCAGC 1 cut(s) 339
BbvI GCAGC 2 cut(s) 559, 674
BccI CCATC 4 cut(s) 376, 389, 794, 808
BceAI ACGGC 2 cut(s) 432, 1238
BciT130I CCWGG 2 cut(s) 1324, 1535
BciVI GTATCC 1 cut(s) 417
BcoDI GTCTC 3 cut(s) 480, 1200, 1334
BfaI CTAG 5 cut(s) 59, 125, 1067, 1307, 1347
BfmI CTRYAG 1 cut(s) 1592
BfuI GTATCC 1 cut(s) 417
BisI GCNGC 3 cut(s) 345, 573, 663
BlpI GCTNAGC 3 cut(s) 318, 387, 1371
BlsI GCNGC 3 cut(s) 346, 574, 664
Bme1390I CCNGG 2 cut(s) 1324, 1535
Bme18I GGWCC 1 cut(s) 1531
BmeT110I CYCGRG 1 cut(s) 1171
BmgBI CACGTC 1 cut(s) 474
BmgT120I GGNCC 2 cut(s) 635, 1531
BmiI GGNNCC 4 cut(s) 443, 636, 963, 1497
BmrFI CCNGG 2 cut(s) 1324, 1535
BmsI GCATC 2 cut(s) 1338, 1405
BpiI GAAGAC 3 cut(s) 108, 177, 539
BplI GAGNNNNNCTC 2 cut(s) 1154, 1186
BpmI CTGGAG 2 cut(s) 883, 980
Bpu10I CCTNAGC 1 cut(s) 339
Bpu1102I GCTNAGC 3 cut(s) 318, 387, 1371
BpuEI CTTGAG 4 cut(s) 248, 449, 462, 572
BsaBI GATNNNNATC 1 cut(s) 1455
BsaHI GRCGYC 1 cut(s) 419
BsaI GGTCTC 1 cut(s) 1334
BsaJI CCNNGG 3 cut(s) 299, 757, 1322
BsaWI WCCGGW 1 cut(s) 536
BsaXI ACNNNNNCTCC 2 cut(s) 1180, 1210
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse118I RCCGGY 1 cut(s) 536
Bse1I ACTGG 2 cut(s) 493, 685
Bse8I GATNNNNATC 1 cut(s) 1455
BseBI CCWGG 2 cut(s) 1324, 1535
BseDI CCNNGG 3 cut(s) 299, 757, 1322
BseGI GGATG 4 cut(s) 30, 139, 979, 1432
BseJI GATNNNNATC 1 cut(s) 1455
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMII CTCAG 4 cut(s) 309, 330, 370, 576
BseNI ACTGG 2 cut(s) 493, 685
BseRI GAGGAG 1 cut(s) 131
BseXI GCAGC 2 cut(s) 559, 674
BshFI GGCC 2 cut(s) 344, 637
BshTI ACCGGT 1 cut(s) 536
BsiHKAI GWGCWC 3 cut(s) 234, 324, 1085
BsiHKCI CYCGRG 1 cut(s) 1171
BsiSI CCGG 1 cut(s) 537
BslFI GGGAC 2 cut(s) 357, 817
BslI CCNNNNNNNGG 1 cut(s) 382
BsmAI GTCTC 3 cut(s) 480, 1200, 1334
BsmBI CGTCTC 1 cut(s) 480
BsmFI GGGAC 2 cut(s) 357, 817
BsnI GGCC 2 cut(s) 344, 637
Bso31I GGTCTC 1 cut(s) 1334
BsoBI CYCGRG 1 cut(s) 1171
Bsp1286I GDGCHC 3 cut(s) 234, 324, 1085
Bsp1407I TGTACA 1 cut(s) 483
Bsp143I GATC 3 cut(s) 432, 1495, 1500
Bsp1720I GCTNAGC 3 cut(s) 318, 387, 1371
BspACI CCGC 2 cut(s) 345, 503
BspANI GGCC 2 cut(s) 344, 637
BspCNI CTCAG 4 cut(s) 310, 331, 369, 575
BspLI GGNNCC 4 cut(s) 443, 636, 963, 1497
BspPI GGATC 2 cut(s) 1490, 1503
BspQI GCTCTTC 1 cut(s) 150
BspTNI GGTCTC 1 cut(s) 1334
BsrFI RCCGGY 1 cut(s) 536
BsrGI TGTACA 1 cut(s) 483
BsrI ACTGG 2 cut(s) 493, 685
BssAI RCCGGY 1 cut(s) 536
BssECI CCNNGG 3 cut(s) 299, 757, 1322
BssMI GATC 3 cut(s) 432, 1495, 1500
BssNI GRCGYC 1 cut(s) 419
BssT1I CCWWGG 2 cut(s) 299, 757
Bst2UI CCWGG 2 cut(s) 1324, 1535
Bst4CI ACNGT 5 cut(s) 107, 892, 987, 1087, 1243
Bst6I CTCTTC 2 cut(s) 150, 972
BstACI GRCGYC 1 cut(s) 419
BstAPI GCANNNNNTGC 1 cut(s) 668
BstAUI TGTACA 1 cut(s) 483
BstC8I GCNNGC 2 cut(s) 570, 1352
BstDEI CTNAG 6 cut(s) 318, 339, 356, 387, 562, 1371
BstF5I GGATG 4 cut(s) 30, 139, 979, 1432
BstKTI GATC 3 cut(s) 435, 1498, 1503
BstMAI GTCTC 3 cut(s) 480, 1200, 1334
BstMBI GATC 3 cut(s) 432, 1495, 1500
BstMWI GCNNNNNNNGC 4 cut(s) 314, 344, 668, 677
BstNI CCWGG 2 cut(s) 1324, 1535
BstNSI RCATGY 2 cut(s) 1338, 1559
BstSCI CCNGG 2 cut(s) 1322, 1533
BstSFI CTRYAG 1 cut(s) 1592
BstV1I GCAGC 2 cut(s) 559, 674
BstV2I GAAGAC 3 cut(s) 108, 177, 539
BstX2I RGATCY 1 cut(s) 1495
BstYI RGATCY 1 cut(s) 1495
BsuI GTATCC 1 cut(s) 417
BsuRI GGCC 2 cut(s) 344, 637
BtrI CACGTC 1 cut(s) 474
BtsCI GGATG 4 cut(s) 30, 139, 979, 1432
BtsI GCAGTG 1 cut(s) 789
BtsIMutI CAGTG 6 cut(s) 112, 364, 486, 570, 789, 1083
Cac8I GCNNGC 2 cut(s) 570, 1352
CaiI CAGNNNCTG 1 cut(s) 668
Cfr10I RCCGGY 1 cut(s) 536
Cfr13I GGNCC 2 cut(s) 635, 1531
CseI GACGC 1 cut(s) 408
Csp6I GTAC 1 cut(s) 484
CspAI ACCGGT 1 cut(s) 536
CviAII CATG 6 cut(s) 239, 325, 1184, 1247, 1335, 1556
CviQI GTAC 1 cut(s) 484
DdeI CTNAG 6 cut(s) 318, 339, 356, 387, 562, 1371
DpnI GATC 3 cut(s) 434, 1497, 1502
DpnII GATC 3 cut(s) 432, 1495, 1500
DraIII CACNNNGTG 1 cut(s) 359
Eam1104I CTCTTC 2 cut(s) 150, 972
EarI CTCTTC 2 cut(s) 150, 972
Ecl136II GAGCTC 2 cut(s) 232, 322
Eco130I CCWWGG 2 cut(s) 299, 757
Eco24I GRGCYC 2 cut(s) 234, 324
Eco31I GGTCTC 1 cut(s) 1334
Eco47I GGWCC 1 cut(s) 1531
Eco53kI GAGCTC 2 cut(s) 232, 322
Eco57I CTGAAG 3 cut(s) 171, 899, 953
Eco88I CYCGRG 1 cut(s) 1171
EcoICRI GAGCTC 2 cut(s) 232, 322
EcoO109I RGGNCCY 2 cut(s) 635, 1531
EcoRI GAATTC 1 cut(s) 944
EcoRII CCWGG 2 cut(s) 1322, 1533
EcoT14I CCWWGG 2 cut(s) 299, 757
EcoT38I GRGCYC 2 cut(s) 234, 324
ErhI CCWWGG 2 cut(s) 299, 757
Esp3I CGTCTC 1 cut(s) 480
FaeI CATG 6 cut(s) 242, 328, 1187, 1250, 1338, 1559
FalI AAGNNNNNCTT 4 cut(s) 735, 767, 1034, 1066
FaqI GGGAC 2 cut(s) 357, 817
FatI CATG 6 cut(s) 238, 324, 1183, 1246, 1334, 1555
FauNDI CATATG 1 cut(s) 796
Fnu4HI GCNGC 3 cut(s) 345, 573, 663
FokI GGATG 4 cut(s) 17, 146, 986, 1419
FriOI GRGCYC 2 cut(s) 234, 324
Fsp4HI GCNGC 3 cut(s) 345, 573, 663
FspBI CTAG 5 cut(s) 59, 125, 1067, 1307, 1347
GluI GCNGC 3 cut(s) 345, 573, 663
GsuI CTGGAG 2 cut(s) 883, 980
HaeIII GGCC 2 cut(s) 344, 637
HapII CCGG 1 cut(s) 537
HgaI GACGC 1 cut(s) 408
Hin1I GRCGYC 1 cut(s) 419
Hin1II CATG 6 cut(s) 242, 328, 1187, 1250, 1338, 1559
HincII GTYRAC 3 cut(s) 204, 862, 1114
HindII GTYRAC 3 cut(s) 204, 862, 1114
HindIII AAGCTT 2 cut(s) 389, 1384
HinfI GANTC 5 cut(s) 27, 370, 875, 1110, 1133
HpaI GTTAAC 2 cut(s) 204, 862
HpaII CCGG 1 cut(s) 537
HphI GGTGA 3 cut(s) 37, 268, 551
Hpy166II GTNNAC 7 cut(s) 204, 484, 486, 862, 895, 1114, 1317
Hpy188I TCNGA 6 cut(s) 190, 381, 411, 997, 1109, 1500
Hpy188III TCNNGA 6 cut(s) 24, 227, 589, 949, 959, 971
Hpy8I GTNNAC 7 cut(s) 204, 484, 486, 862, 895, 1114, 1317
Hpy99I CGWCG 1 cut(s) 424
HpyAV CCTTC 3 cut(s) 59, 386, 1522
HpyCH4III ACNGT 5 cut(s) 107, 892, 987, 1087, 1243
HpyCH4IV ACGT 1 cut(s) 473
HpyCH4V TGCA 6 cut(s) 575, 680, 794, 932, 1183, 1329
HpyF10VI GCNNNNNNNGC 4 cut(s) 314, 344, 668, 677
HpyF3I CTNAG 6 cut(s) 318, 339, 356, 387, 562, 1371
HpySE526I ACGT 1 cut(s) 473
Hsp92I GRCGYC 1 cut(s) 419
Hsp92II CATG 6 cut(s) 242, 328, 1187, 1250, 1338, 1559
KspAI GTTAAC 2 cut(s) 204, 862
Kzo9I GATC 3 cut(s) 432, 1495, 1500
LguI GCTCTTC 1 cut(s) 150
LmnI GCTCC 4 cut(s) 118, 301, 817, 961
Lsp1109I GCAGC 2 cut(s) 559, 674
LweI GCATC 2 cut(s) 1338, 1405
MaeI CTAG 5 cut(s) 59, 125, 1067, 1307, 1347
MaeII ACGT 1 cut(s) 473
MalI GATC 3 cut(s) 434, 1497, 1502
MboI GATC 3 cut(s) 432, 1495, 1500
MflI RGATCY 1 cut(s) 1495
MhlI GDGCHC 3 cut(s) 234, 324, 1085
MluCI AATT 9 cut(s) 110, 332, 362, 650, 762, 880, 944, 1393, 1410
MlyI GAGTC 2 cut(s) 379, 1119
MmeI TCCRAC 3 cut(s) 1166, 1237, 1484
MseI TTAA 5 cut(s) 203, 747, 861, 909, 1052
MslI CAYNNNNRTG 2 cut(s) 1088, 1324
MspA1I CMGCKG 1 cut(s) 572
MspI CCGG 1 cut(s) 537
MspR9I CCNGG 2 cut(s) 1324, 1535
MvaI CCWGG 2 cut(s) 1324, 1535
MwoI GCNNNNNNNGC 4 cut(s) 314, 344, 668, 677
NdeI CATATG 1 cut(s) 796
NdeII GATC 3 cut(s) 432, 1495, 1500
NlaIII CATG 6 cut(s) 242, 328, 1187, 1250, 1338, 1559
NlaIV GGNNCC 4 cut(s) 443, 636, 963, 1497
NspI RCATGY 2 cut(s) 1338, 1559
OliI CACNNNNGTG 2 cut(s) 1088, 1324
PciI ACATGT 2 cut(s) 1334, 1555
PciSI GCTCTTC 1 cut(s) 150
PfeI GAWTC 3 cut(s) 27, 875, 1133
PinAI ACCGGT 1 cut(s) 536
PkrI GCNGC 3 cut(s) 346, 574, 664
PleI GAGTC 2 cut(s) 378, 1118
PpsI GAGTC 2 cut(s) 378, 1118
PpuMI RGGWCCY 1 cut(s) 1531
PscI ACATGT 2 cut(s) 1334, 1555
Psp124BI GAGCTC 2 cut(s) 234, 324
Psp5II RGGWCCY 1 cut(s) 1531
Psp6I CCWGG 2 cut(s) 1322, 1533
PspGI CCWGG 2 cut(s) 1322, 1533
PspN4I GGNNCC 4 cut(s) 443, 636, 963, 1497
PspPI GGNCC 2 cut(s) 635, 1531
PspPPI RGGWCCY 1 cut(s) 1531
PstNI CAGNNNCTG 1 cut(s) 668
PsuI RGATCY 1 cut(s) 1495
PvuII CAGCTG 1 cut(s) 572
RsaI GTAC 1 cut(s) 485
RsaNI GTAC 1 cut(s) 484
RseI CAYNNNNRTG 2 cut(s) 1088, 1324
SacI GAGCTC 2 cut(s) 234, 324
SapI GCTCTTC 1 cut(s) 150
SaqAI TTAA 5 cut(s) 203, 747, 861, 909, 1052
SatI GCNGC 3 cut(s) 345, 573, 663
Sau3AI GATC 3 cut(s) 432, 1495, 1500
Sau96I GGNCC 2 cut(s) 635, 1531
SchI GAGTC 2 cut(s) 379, 1119
ScrFI CCNGG 2 cut(s) 1324, 1535
SduI GDGCHC 3 cut(s) 234, 324, 1085
SfaNI GCATC 2 cut(s) 1338, 1405
SfcI CTRYAG 1 cut(s) 1592
SinI GGWCC 1 cut(s) 1531
SmiMI CAYNNNNRTG 2 cut(s) 1088, 1324
SmlI CTYRAG 4 cut(s) 227, 428, 477, 587
SmoI CTYRAG 4 cut(s) 227, 428, 477, 587
Sse9I AATT 9 cut(s) 110, 332, 362, 650, 762, 880, 944, 1393, 1410
SsiI CCGC 2 cut(s) 345, 503
SspI AATATT 1 cut(s) 825
SspMI CTAG 5 cut(s) 59, 125, 1067, 1307, 1347
SstI GAGCTC 2 cut(s) 234, 324
StyD4I CCNGG 2 cut(s) 1322, 1533
StyI CCWWGG 2 cut(s) 299, 757
TaaI ACNGT 5 cut(s) 107, 892, 987, 1087, 1243
TaiI ACGT 1 cut(s) 476
TaqI TCGA 1 cut(s) 982
TasI AATT 9 cut(s) 110, 332, 362, 650, 762, 880, 944, 1393, 1410
TatI WGTACW 1 cut(s) 483
TauI GCSGC 1 cut(s) 347
TfiI GAWTC 3 cut(s) 27, 875, 1133
Tru1I TTAA 5 cut(s) 203, 747, 861, 909, 1052
Tru9I TTAA 5 cut(s) 203, 747, 861, 909, 1052
TscAI CASTG 6 cut(s) 112, 364, 493, 570, 796, 1090
TseI GCWGC 2 cut(s) 572, 662
TspDTI ATGAA 7 cut(s) 19, 58, 153, 957, 1044, 1251, 1443
TspRI CASTG 6 cut(s) 112, 364, 493, 570, 796, 1090
VpaK11BI GGWCC 1 cut(s) 1531
XapI RAATTY 3 cut(s) 650, 880, 944
XceI RCATGY 2 cut(s) 1338, 1559
XcmI CCANNNNNNNNNTGG 1 cut(s) 1253
XspI CTAG 5 cut(s) 59, 125, 1067, 1307, 1347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.