Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0015135

Physical Location & Seq

Genomic Coordinates Forward (+)

59974912 .. 59981407

Gene Structure 6496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG402200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1569 bp

ATGTTTAGACCAAAACCCACATCAAGATTCATCCTTTTAGCCCTCACCCTTCTCCTACTAGTCAATTTCCTAGCTTCAATCACAGCCTCTGAACCCACCACTTCTGAAAGTGAAGATAATGAATTGGAGGAGTTACTAGCATTAGATGATGAAGTGGAACAAGAAGAAGAAGAGCAAGGAGGGACTCCTAATGTGAGGTCTTCAGAGGCAGAGCTGTTAACCAAAGCCCAGAGGATTGTTCTTGAGCTTAACCATGACAATACCAAAAGGGTGATTGACAAGAATGAGTTTGTTCTGGTTCTTGGGTATGCTCCTTGGTGTGCCAGAAGTGCTGAGCTTATGCCTCAATTTGCTGAGGCTGCAACTTCACTCAGTGAATTGGGGAGTCCTCTTGTGATGGCTAAGCTTGATGCAGAGCGGTATCCCAAAACGGCGTCGCTGCTTGAGATCAAAGGGTTCCCTACTCTGCTTCTGTTTGTCAATGGCACCTCTCAAGTGTACACCGGTGGATTTTCTGCGGAAGAAATAGTGATATGGGCAAGGAAGAAGACTGGTGAGCCTGTTATTAGGATAAGCTCGGTGCCAGCGGCGGAACAATTTCTCAAGAAGCATCATATATTTGTTGTTGGTTTGTTTGAAAAATTTGAGGGGCCTTACTATAAAGAATTTGTAAAAGCAGCAACAGCTGACAATGCAATCCAGTTTGTAGAAGTAAGCGACATCAATGTTGCCAATGTTCTCTTTCCAAATATAAAACCAGCTAATCTTTTCCTTGGAATTGTGAAATCTGAGGCTGAAAGATACACTGCGTATGAAGGGACATTTGAGATGGAGCAAATATTGAAGTTCTTGGACTATAACAAGTTTCCATTAGTTAACAAACTGACTGAATCAAATTCTGCCACAGTTTACTCCAGCCCTCTTAAACTTCAGGTCATTGTCTTTGCAGAAGAAGATGAATTCAAGAAGCTTCTGGAGCCTCTTCAGGATATTGCTCGACAATTCAAGTCAGAGATAATGTTTATATATATAGACATCACAGATGAAAACCTTGCCAAGCCTTATTTAACGTTATTTGGGCTTGAAGAAGCAGAGAGCACTGTGGTGGCTGCTTTTGATGTCCGAGTCAACTCTAAATATCTATTAGAGTCAAATCCAACACCAAGCAATATAGAGGAGTTCTGCTCAGGGCTTCTGCATGGCACTTTGTCTCCATACTTCAAATCACAAGCAATACCTAATAACGCCAATGAAACCGTCCATGTTGCTGTTGGAAAGACATTTGATGACTTGGTTTTGAATAACCACAAGAATGTTCTACTAGAGGTGTTCACACCATGGTGCGTCACATGTGAAACCACTAGCAAGCGCGTCGAGAAGTTGGCTAAGCATTTCAAAAATTTGGATAGTTTATTCTTCGCAAAGATAGATGCTTCTGCAAATGAACATCCAAAACTGAAAGTAGATGACTATCCAACACTCTTATTTTATGCAGCCAATAATAAAGAGAACCCGGTAATCAGTCACAACATATTCCATTTTTGCTGTTACTTACTCTTCAAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006950 GO:0008150 GO:0009987 GO:0012505 GO:0016853 GO:0016860 GO:0016864 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

522

Amino Acids

58.8

Weight (kDa)

4.99

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	81 - 179	1e-14	Thioredoxin
Thioredoxin_6	PF13848	212 - 396	1.4e-16	Thioredoxin-like domain
Thioredoxin	PF00085	421 - 503	6.7e-12	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16110
fragaria_vesca	FvH4_6g31670
malus_domestica	MD09G1209900.v1.1 MD17G1191800.v1.1
prunus_persica	Prupe.3G067900_v2.0.a1
pyrus_communis	pycom17g19880
rosa_chinensis	RchiOBHm_Chr2g0138751
rosa_laevigata	RLG00000019758
rosa_multiflora	Rmu_sc0006243.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105970
rosa_rugosa	Rorug02G0352600
rosa_samantha	Rh2AG402200 Rh2BG405400 Rh2CG388400 Rh2DG422400
rosa_wichuraiana	Rw2G032700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	485, 580
AccBSI	CCGCTC	1 cut(s)	418
AccII	CGCG	1 cut(s)	1371
AciI	CCGC	4 cut(s)	418, 518, 587, 590
AclI	AACGTT	1 cut(s)	1070
AcsI	RAATTY	5 cut(s)	641, 665, 895, 959, 1399
AcuI	CTGAAG	3 cut(s)	186, 914, 968
AcyI	GRCGYC	1 cut(s)	434
AdeI	CACNNNGTG	1 cut(s)	374
AfaI	GTAC	1 cut(s)	500
AflIII	ACRYGT	1 cut(s)	1349
AgeI	ACCGGT	1 cut(s)	503
AhlI	ACTAGT	1 cut(s)	58
AleI	CACNNNNGTG	2 cut(s)	1103, 1339
AluBI	AGCT	9 cut(s)	74, 214, 247, 337, 406, 576, 686, 761, 970
AluI	AGCT	9 cut(s)	74, 214, 247, 337, 406, 576, 686, 761, 970
Alw21I	GWGCWC	1 cut(s)	1100
Alw26I	GTCTC	1 cut(s)	1215
AlwNI	CAGNNNCTG	1 cut(s)	89
AoxI	GGCC	1 cut(s)	650
ApeKI	GCWGC	5 cut(s)	359, 439, 677, 1109, 1493
ApoI	RAATTY	5 cut(s)	641, 665, 895, 959, 1399
AsiGI	ACCGGT	1 cut(s)	503
Asp700I	GAANNNNTTC	1 cut(s)	597
AspLEI	GCGC	1 cut(s)	1371
AspS9I	GGNCC	1 cut(s)	650
AsuC2I	CCSGG	1 cut(s)	1514
AsuHPI	GGTGA	3 cut(s)	37, 283, 566
BanI	GGYRCC	2 cut(s)	485, 580
BbsI	GAAGAC	2 cut(s)	192, 554
Bbv12I	GWGCWC	1 cut(s)	1100
BbvCI	CCTCAGC	1 cut(s)	354
BbvI	GCAGC	5 cut(s)	346, 426, 689, 1096, 1505
BccI	CCATC	2 cut(s)	391, 823
BceAI	ACGGC	1 cut(s)	447
BcgI	CGANNNNNNTGC	2 cut(s)	1354, 1388
BciVI	GTATCC	1 cut(s)	432
BcnI	CCSGG	1 cut(s)	1514
BcoDI	GTCTC	1 cut(s)	1215
BcuI	ACTAGT	1 cut(s)	58
BfaI	CTAG	5 cut(s)	59, 71, 137, 1322, 1362
BfuI	GTATCC	1 cut(s)	432
BisI	GCNGC	6 cut(s)	360, 440, 588, 678, 1110, 1494
BlpI	GCTNAGC	3 cut(s)	333, 402, 1386
BlsI	GCNGC	6 cut(s)	361, 441, 589, 679, 1111, 1495
Bme1390I	CCNGG	1 cut(s)	1514
BmgT120I	GGNCC	1 cut(s)	650
BmiI	GGNNCC	5 cut(s)	458, 487, 582, 651, 978
BmrFI	CCNGG	1 cut(s)	1514
BmsI	GCATC	3 cut(s)	400, 619, 1420
BpiI	GAAGAC	2 cut(s)	192, 554
BplI	GAGNNNNNCTC	2 cut(s)	1169, 1201
BpmI	CTGGAG	2 cut(s)	898, 995
Bpu10I	CCTNAGC	2 cut(s)	354, 1186
Bpu1102I	GCTNAGC	3 cut(s)	333, 402, 1386
BpuEI	CTTGAG	4 cut(s)	263, 464, 477, 587
BpuMI	CCSGG	1 cut(s)	1514
BsaBI	GATNNNNATC	1 cut(s)	1470
BsaHI	GRCGYC	1 cut(s)	434
BsaJI	CCNNGG	3 cut(s)	314, 772, 1337
BsaWI	WCCGGW	1 cut(s)	503
BsaXI	ACNNNNNCTCC	2 cut(s)	1195, 1225
Bse118I	RCCGGY	1 cut(s)	503
Bse1I	ACTGG	2 cut(s)	556, 700
Bse8I	GATNNNNATC	1 cut(s)	1470
BseDI	CCNNGG	3 cut(s)	314, 772, 1337
BseGI	GGATG	2 cut(s)	30, 1447
BseJI	GATNNNNATC	1 cut(s)	1470
BseMII	CTCAG	5 cut(s)	324, 345, 385, 780, 1200
BseNI	ACTGG	2 cut(s)	556, 700
BseRI	GAGGAG	2 cut(s)	143, 1190
BseXI	GCAGC	5 cut(s)	346, 426, 689, 1096, 1505
Bsh1236I	CGCG	1 cut(s)	1371
BshFI	GGCC	1 cut(s)	652
BshNI	GGYRCC	2 cut(s)	485, 580
BshTI	ACCGGT	1 cut(s)	503
BsiHKAI	GWGCWC	1 cut(s)	1100
BsiSI	CCGG	2 cut(s)	504, 1514
BslFI	GGGAC	2 cut(s)	196, 832
BsmAI	GTCTC	1 cut(s)	1215
BsmFI	GGGAC	2 cut(s)	196, 832
BsnI	GGCC	1 cut(s)	652
Bsp1286I	GDGCHC	1 cut(s)	1100
Bsp1407I	TGTACA	1 cut(s)	498
Bsp143I	GATC	1 cut(s)	447
Bsp1720I	GCTNAGC	3 cut(s)	333, 402, 1386
Bsp19I	CCATGG	1 cut(s)	1337
BspACI	CCGC	4 cut(s)	418, 518, 587, 590
BspANI	GGCC	1 cut(s)	652
BspCNI	CTCAG	5 cut(s)	325, 346, 384, 781, 1199
BspFNI	CGCG	1 cut(s)	1371
BspLI	GGNNCC	5 cut(s)	458, 487, 582, 651, 978
BspQI	GCTCTTC	1 cut(s)	165
BspT107I	GGYRCC	2 cut(s)	485, 580
BsrBI	CCGCTC	1 cut(s)	418
BsrFI	RCCGGY	1 cut(s)	503
BsrGI	TGTACA	1 cut(s)	498
BsrI	ACTGG	2 cut(s)	556, 700
BssAI	RCCGGY	1 cut(s)	503
BssECI	CCNNGG	3 cut(s)	314, 772, 1337
BssMI	GATC	1 cut(s)	447
BssNI	GRCGYC	1 cut(s)	434
BssT1I	CCWWGG	3 cut(s)	314, 772, 1337
Bst4CI	ACNGT	3 cut(s)	907, 1102, 1258
Bst6I	CTCTTC	3 cut(s)	165, 987, 1562
BstACI	GRCGYC	1 cut(s)	434
BstAUI	TGTACA	1 cut(s)	498
BstC8I	GCNNGC	2 cut(s)	585, 1367
BstDEI	CTNAG	7 cut(s)	333, 354, 371, 402, 789, 1186, 1386
BstDSI	CCRYGG	1 cut(s)	1337
BstF5I	GGATG	2 cut(s)	30, 1447
BstFNI	CGCG	1 cut(s)	1371
BstHHI	GCGC	1 cut(s)	1371
BstKTI	GATC	1 cut(s)	450
BstMAI	GTCTC	1 cut(s)	1215
BstMBI	GATC	1 cut(s)	447
BstMWI	GCNNNNNNNGC	5 cut(s)	329, 359, 683, 692, 976
BstNSI	RCATGY	1 cut(s)	1353
BstSCI	CCNGG	1 cut(s)	1512
BstUI	CGCG	1 cut(s)	1371
BstV1I	GCAGC	5 cut(s)	346, 426, 689, 1096, 1505
BstV2I	GAAGAC	2 cut(s)	192, 554
BsuI	GTATCC	1 cut(s)	432
BsuRI	GGCC	1 cut(s)	652
BtgI	CCRYGG	1 cut(s)	1337
BtsCI	GGATG	2 cut(s)	30, 1447
BtsI	GCAGTG	1 cut(s)	804
BtsIMutI	CAGTG	3 cut(s)	379, 804, 1098
Cac8I	GCNNGC	2 cut(s)	585, 1367
CaiI	CAGNNNCTG	1 cut(s)	89
CfoI	GCGC	1 cut(s)	1371
Cfr10I	RCCGGY	1 cut(s)	503
Cfr13I	GGNCC	1 cut(s)	650
CseI	GACGC	3 cut(s)	423, 1333, 1360
Csp6I	GTAC	1 cut(s)	499
CspAI	ACCGGT	1 cut(s)	503
CviAII	CATG	5 cut(s)	254, 1199, 1262, 1338, 1350
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	7 cut(s)	333, 354, 371, 402, 789, 1186, 1386
DpnI	GATC	1 cut(s)	449
DpnII	GATC	1 cut(s)	447
DraIII	CACNNNGTG	1 cut(s)	374
Eam1104I	CTCTTC	3 cut(s)	165, 987, 1562
EarI	CTCTTC	3 cut(s)	165, 987, 1562
EciI	GGCGGA	1 cut(s)	605
Eco130I	CCWWGG	3 cut(s)	314, 772, 1337
Eco57I	CTGAAG	3 cut(s)	186, 914, 968
EcoO109I	RGGNCCY	1 cut(s)	650
EcoRI	GAATTC	1 cut(s)	959
EcoT14I	CCWWGG	3 cut(s)	314, 772, 1337
ErhI	CCWWGG	3 cut(s)	314, 772, 1337
FaeI	CATG	5 cut(s)	257, 1202, 1265, 1341, 1353
FaqI	GGGAC	2 cut(s)	196, 832
FatI	CATG	5 cut(s)	253, 1198, 1261, 1337, 1349
Fnu4HI	GCNGC	6 cut(s)	360, 440, 588, 678, 1110, 1494
FokI	GGATG	2 cut(s)	17, 1434
Fsp4HI	GCNGC	6 cut(s)	360, 440, 588, 678, 1110, 1494
FspBI	CTAG	5 cut(s)	59, 71, 137, 1322, 1362
GlaI	GCGC	1 cut(s)	1370
GluI	GCNGC	6 cut(s)	360, 440, 588, 678, 1110, 1494
GsuI	CTGGAG	2 cut(s)	898, 995
HaeIII	GGCC	1 cut(s)	652
HapII	CCGG	2 cut(s)	504, 1514
HgaI	GACGC	3 cut(s)	423, 1333, 1360
HhaI	GCGC	1 cut(s)	1371
Hin1I	GRCGYC	1 cut(s)	434
Hin1II	CATG	5 cut(s)	257, 1202, 1265, 1341, 1353
Hin6I	GCGC	1 cut(s)	1369
HinP1I	GCGC	1 cut(s)	1369
HincII	GTYRAC	3 cut(s)	219, 877, 1129
HindII	GTYRAC	3 cut(s)	219, 877, 1129
HindIII	AAGCTT	2 cut(s)	404, 968
HinfI	GANTC	6 cut(s)	27, 184, 385, 890, 1125, 1148
HpaI	GTTAAC	2 cut(s)	219, 877
HpaII	CCGG	2 cut(s)	504, 1514
HphI	GGTGA	3 cut(s)	37, 283, 566
Hpy166II	GTNNAC	7 cut(s)	219, 499, 501, 877, 910, 1129, 1332
Hpy188I	TCNGA	6 cut(s)	91, 106, 205, 790, 1012, 1124
Hpy188III	TCNNGA	7 cut(s)	24, 242, 604, 964, 974, 986, 1375
Hpy8I	GTNNAC	7 cut(s)	219, 499, 501, 877, 910, 1129, 1332
Hpy99I	CGWCG	2 cut(s)	439, 1376
HpyAV	CCTTC	2 cut(s)	59, 809
HpyCH4III	ACNGT	3 cut(s)	907, 1102, 1258
HpyCH4IV	ACGT	1 cut(s)	1070
HpyCH4V	TGCA	7 cut(s)	362, 413, 695, 947, 1198, 1439, 1493
HpyF10VI	GCNNNNNNNGC	5 cut(s)	329, 359, 683, 692, 976
HpyF3I	CTNAG	7 cut(s)	333, 354, 371, 402, 789, 1186, 1386
HpySE526I	ACGT	1 cut(s)	1070
Hsp92I	GRCGYC	1 cut(s)	434
Hsp92II	CATG	5 cut(s)	257, 1202, 1265, 1341, 1353
HspAI	GCGC	1 cut(s)	1369
KspAI	GTTAAC	2 cut(s)	219, 877
Kzo9I	GATC	1 cut(s)	447
LguI	GCTCTTC	1 cut(s)	165
LmnI	GCTCC	3 cut(s)	316, 832, 976
Lsp1109I	GCAGC	5 cut(s)	346, 426, 689, 1096, 1505
LweI	GCATC	3 cut(s)	400, 619, 1420
MaeI	CTAG	5 cut(s)	59, 71, 137, 1322, 1362
MaeII	ACGT	1 cut(s)	1070
MaeIII	GTNAC	4 cut(s)	132, 1345, 1523, 1547
MalI	GATC	1 cut(s)	449
MbiI	CCGCTC	1 cut(s)	418
MboI	GATC	1 cut(s)	447
MhlI	GDGCHC	1 cut(s)	1100
MlyI	GAGTC	4 cut(s)	178, 394, 1134, 1157
MmeI	TCCRAC	3 cut(s)	1181, 1252, 1499
MroXI	GAANNNNTTC	1 cut(s)	597
MseI	TTAA	5 cut(s)	218, 249, 876, 924, 1067
MslI	CAYNNNNRTG	3 cut(s)	1103, 1311, 1339
MspA1I	CMGCKG	2 cut(s)	587, 686
MspI	CCGG	2 cut(s)	504, 1514
MspR9I	CCNGG	1 cut(s)	1514
MvnI	CGCG	1 cut(s)	1371
MwoI	GCNNNNNNNGC	5 cut(s)	329, 359, 683, 692, 976
NciI	CCSGG	1 cut(s)	1514
NcoI	CCATGG	1 cut(s)	1337
NdeII	GATC	1 cut(s)	447
NlaIII	CATG	5 cut(s)	257, 1202, 1265, 1341, 1353
NlaIV	GGNNCC	5 cut(s)	458, 487, 582, 651, 978
NmuCI	GTSAC	2 cut(s)	1345, 1523
NspI	RCATGY	1 cut(s)	1353
OliI	CACNNNNGTG	2 cut(s)	1103, 1339
PciI	ACATGT	1 cut(s)	1349
PciSI	GCTCTTC	1 cut(s)	165
PdmI	GAANNNNTTC	1 cut(s)	597
PfeI	GAWTC	2 cut(s)	27, 890
PinAI	ACCGGT	1 cut(s)	503
PkrI	GCNGC	6 cut(s)	361, 441, 589, 679, 1111, 1495
PleI	GAGTC	4 cut(s)	178, 393, 1133, 1156
PpsI	GAGTC	4 cut(s)	178, 393, 1133, 1156
PscI	ACATGT	1 cut(s)	1349
Psp1406I	AACGTT	1 cut(s)	1070
PspN4I	GGNNCC	5 cut(s)	458, 487, 582, 651, 978
PspPI	GGNCC	1 cut(s)	650
PstNI	CAGNNNCTG	1 cut(s)	89
PvuII	CAGCTG	1 cut(s)	686
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
RseI	CAYNNNNRTG	3 cut(s)	1103, 1311, 1339
SapI	GCTCTTC	1 cut(s)	165
SaqAI	TTAA	5 cut(s)	218, 249, 876, 924, 1067
SatI	GCNGC	6 cut(s)	360, 440, 588, 678, 1110, 1494
Sau3AI	GATC	1 cut(s)	447
Sau96I	GGNCC	1 cut(s)	650
SchI	GAGTC	4 cut(s)	178, 394, 1134, 1157
ScrFI	CCNGG	1 cut(s)	1514
SduI	GDGCHC	1 cut(s)	1100
SfaNI	GCATC	3 cut(s)	400, 619, 1420
SgrAI	CRCCGGYG	1 cut(s)	503
SmiMI	CAYNNNNRTG	3 cut(s)	1103, 1311, 1339
SmlI	CTYRAG	4 cut(s)	242, 443, 492, 602
SmoI	CTYRAG	4 cut(s)	242, 443, 492, 602
SpeI	ACTAGT	1 cut(s)	58
SsiI	CCGC	4 cut(s)	418, 518, 587, 590
SspI	AATATT	1 cut(s)	840
SspMI	CTAG	5 cut(s)	59, 71, 137, 1322, 1362
StyD4I	CCNGG	1 cut(s)	1512
StyI	CCWWGG	3 cut(s)	314, 772, 1337
TaaI	ACNGT	3 cut(s)	907, 1102, 1258
TaiI	ACGT	1 cut(s)	1073
TaqI	TCGA	2 cut(s)	997, 1374
TatI	WGTACW	1 cut(s)	498
TauI	GCSGC	1 cut(s)	590
TfiI	GAWTC	2 cut(s)	27, 890
Tru1I	TTAA	5 cut(s)	218, 249, 876, 924, 1067
Tru9I	TTAA	5 cut(s)	218, 249, 876, 924, 1067
TscAI	CASTG	3 cut(s)	379, 811, 1105
TseFI	GTSAC	2 cut(s)	1345, 1523
TseI	GCWGC	5 cut(s)	359, 439, 677, 1109, 1493
Tsp45I	GTSAC	2 cut(s)	1345, 1523
TspDTI	ATGAA	8 cut(s)	19, 135, 165, 828, 972, 1059, 1266, 1458
TspRI	CASTG	3 cut(s)	379, 811, 1105
XapI	RAATTY	5 cut(s)	641, 665, 895, 959, 1399
XceI	RCATGY	1 cut(s)	1353
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1268
XmnI	GAANNNNTTC	1 cut(s)	597
XspI	CTAG	5 cut(s)	59, 71, 137, 1322, 1362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.