Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0017059

Physical Location & Seq

Genomic Coordinates Forward (+)

25966005 .. 25968681

Gene Structure 2677 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g32920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGATTCCAGAATATGATTATCTTTTCAAACTTTTGCTCATTGGAGATTCTGGCGTTGGCAAGTCTTGCCTTCTTCTGAGATTTGCGGACGATTCTTACATTGACAGCTACATAAGTACCATTGGTGTTGACTTTAAAATTCGAACAGTGGAGCAGGACGGGAAGGTTGTGAAACTTCAAATTTGGGACACGGCTGGTCAAGAACGTTTCAGAACAATTACAAGCAGTTACTATCGCGGTGCACATGGCATTATCCTTGTCTATGATGTCACGGATCAAGAAAGCTTCAACAATGTGAAGACCTGGCTGCAAGAAATTGATAAGTTTGCTGTTGGAAATGTGAACAAGCTGTTGGTTGGAAACAAGTCCGACTTAGCTGACAAGAAAGTGGTGTCTTCTGAAGCCAGCAAGGCATTTGCAGATGAGCTAGGAATTCCGTTCTTGGAAACAAGTGCCAAAAACTCCACCAATGTAGATCAAGCGTTCATGACTATGGTTACAGAGATAAAGAATAGGATTGCTACTCAACCGATGAGTGCTAACAAGCCATCCACTGTGCATATGCGCGGACAGCCAGTTAATCAAAAGACCACCTGCTGCTCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006888 GO:0007275 GO:0008150 GO:0009506 GO:0009555 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0022414 GO:0030054 GO:0030154 GO:0031090 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046907 GO:0048193 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0055044 GO:0060560 GO:0071840 GO:0071944 GO:0098588 GO:0098791 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

Ras

Protein Analysis

203

Amino Acids

22.5

Weight (kDa)

6.14

Isoelectric Point (pI)

26.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 131	4.1e-16	ADP-ribosylation factor family
Ras	PF00071	10 - 170	1.6e-66	Ras family
Roc	PF08477	10 - 124	1.2e-35	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	45 - 168	9.5e-06	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0017059)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32920
malus_domestica	MD09G1196600.v1.1
prunus_persica	Prupe.3G053000_v2.0.a1
pyrus_communis	pycom09g11370
rosa_chinensis	RchiOBHm_Chr2g0142371
rosa_laevigata	RLG00000019955
rosa_multiflora	Rmu_sc0001211.1_g000034
rosa_roxburghii	Rroxscaffold_2G00102680 Rroxscaffold_2G00103240
rosa_rugosa	Rorug02G0372400
rosa_samantha	Rh2AG424100 Rh2CG410700
rosa_wichuraiana	Rw0G014990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	602
Acc36I	ACCTGC	1 cut(s)	602
AccII	CGCG	2 cut(s)	237, 567
AciI	CCGC	3 cut(s)	86, 237, 567
AclI	AACGTT	1 cut(s)	205
AclWI	GGATC	1 cut(s)	282
AcsI	RAATTY	3 cut(s)	138, 180, 432
AcuI	CTGAAG	1 cut(s)	420
AfaI	GTAC	1 cut(s)	118
AgsI	TTSAA	3 cut(s)	28, 179, 289
AjnI	CCWGG	1 cut(s)	302
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AluBI	AGCT	5 cut(s)	108, 285, 349, 377, 427
AluI	AGCT	5 cut(s)	108, 285, 349, 377, 427
Alw21I	GWGCWC	1 cut(s)	244
Alw44I	GTGCAC	1 cut(s)	240
AlwI	GGATC	1 cut(s)	282
ApaLI	GTGCAC	1 cut(s)	240
ApeKI	GCWGC	2 cut(s)	307, 597
ApoI	RAATTY	3 cut(s)	138, 180, 432
AspLEI	GCGC	1 cut(s)	567
AsuII	TTCGAA	1 cut(s)	142
BaeGI	GKGCMC	1 cut(s)	244
BaeI	ACNNNNGTAYC	2 cut(s)	100, 133
BbsI	GAAGAC	2 cut(s)	305, 387
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	2 cut(s)	294, 584
BccI	CCATC	1 cut(s)	556
BceAI	ACGGC	1 cut(s)	207
BciT130I	CCWGG	1 cut(s)	304
BfaI	CTAG	1 cut(s)	428
BfuAI	ACCTGC	1 cut(s)	602
BglI	GCCNNNNNGGC	1 cut(s)	410
BisI	GCNGC	2 cut(s)	308, 598
BlsI	GCNGC	2 cut(s)	309, 599
Bme1390I	CCNGG	1 cut(s)	304
BmrFI	CCNGG	1 cut(s)	304
BpiI	GAAGAC	2 cut(s)	305, 387
Bpu14I	TTCGAA	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	575
BseBI	CCWGG	1 cut(s)	304
BseGI	GGATG	1 cut(s)	548
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	575
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	2 cut(s)	294, 584
Bsh1236I	CGCG	2 cut(s)	237, 567
BsiHKAI	GWGCWC	1 cut(s)	244
BslFI	GGGAC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	200
Bsp119I	TTCGAA	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	2 cut(s)	274, 475
BspACI	CCGC	3 cut(s)	86, 237, 567
BspCNI	CTCAG	1 cut(s)	69
BspFNI	CGCG	2 cut(s)	237, 567
BspHI	TCATGA	1 cut(s)	486
BspMI	ACCTGC	1 cut(s)	602
BspPI	GGATC	1 cut(s)	282
BspT104I	TTCGAA	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	575
BssMI	GATC	2 cut(s)	274, 475
Bst2UI	CCWGG	1 cut(s)	304
Bst4CI	ACNGT	2 cut(s)	148, 556
BstAPI	GCANNNNNTGC	1 cut(s)	66
BstBI	TTCGAA	1 cut(s)	142
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	2 cut(s)	77, 373
BstF5I	GGATG	1 cut(s)	548
BstFNI	CGCG	2 cut(s)	237, 567
BstHHI	GCGC	1 cut(s)	567
BstKTI	GATC	2 cut(s)	277, 478
BstMBI	GATC	2 cut(s)	274, 475
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 410, 571
BstNI	CCWGG	1 cut(s)	304
BstSCI	CCNGG	1 cut(s)	302
BstSLI	GKGCMC	1 cut(s)	244
BstUI	CGCG	2 cut(s)	237, 567
BstV1I	GCAGC	2 cut(s)	294, 584
BstV2I	GAAGAC	2 cut(s)	305, 387
BtsCI	GGATG	1 cut(s)	548
BtsIMutI	CAGTG	2 cut(s)	153, 552
BveI	ACCTGC	1 cut(s)	602
Cac8I	GCNNGC	1 cut(s)	406
CciI	TCATGA	1 cut(s)	486
CfoI	GCGC	1 cut(s)	567
Csp6I	GTAC	1 cut(s)	117
CviAII	CATG	2 cut(s)	245, 487
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	2 cut(s)	77, 373
DpnI	GATC	2 cut(s)	276, 477
DpnII	GATC	2 cut(s)	274, 475
DraI	TTTAAA	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	420
EcoRI	GAATTC	1 cut(s)	432
EcoRII	CCWGG	1 cut(s)	302
FaeI	CATG	2 cut(s)	248, 490
FaiI	YATR	8 cut(s)	15, 113, 246, 264, 488, 494, 561, 563
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	2 cut(s)	244, 486
FauNDI	CATATG	1 cut(s)	561
Fnu4HI	GCNGC	2 cut(s)	308, 598
FokI	GGATG	1 cut(s)	535
Fsp4HI	GCNGC	2 cut(s)	308, 598
FspBI	CTAG	1 cut(s)	428
GlaI	GCGC	1 cut(s)	566
GluI	GCNGC	2 cut(s)	308, 598
HhaI	GCGC	1 cut(s)	567
Hin1II	CATG	2 cut(s)	248, 490
Hin6I	GCGC	1 cut(s)	565
HinP1I	GCGC	1 cut(s)	565
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	283
HinfI	GANTC	3 cut(s)	4, 47, 92
Hpy166II	GTNNAC	3 cut(s)	130, 242, 343
Hpy188I	TCNGA	4 cut(s)	78, 212, 370, 400
Hpy188III	TCNNGA	5 cut(s)	8, 200, 278, 487, 606
Hpy8I	GTNNAC	3 cut(s)	130, 242, 343
HpyAV	CCTTC	2 cut(s)	80, 157
HpyCH4III	ACNGT	2 cut(s)	148, 556
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	4 cut(s)	242, 310, 419, 559
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 410, 571
HpyF3I	CTNAG	2 cut(s)	77, 373
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	2 cut(s)	248, 490
HspAI	GCGC	1 cut(s)	565
Kzo9I	GATC	2 cut(s)	274, 475
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	8 cut(s)	21, 36, 140, 180, 289, 316, 418, 588
Lsp1109I	GCAGC	2 cut(s)	294, 584
MaeI	CTAG	1 cut(s)	428
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	3 cut(s)	227, 268, 496
MalI	GATC	2 cut(s)	276, 477
MboI	GATC	2 cut(s)	274, 475
MboII	GAAGA	3 cut(s)	65, 310, 387
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	5 cut(s)	138, 180, 216, 315, 432
MmeI	TCCRAC	3 cut(s)	313, 337, 393
MseI	TTAA	2 cut(s)	135, 579
MslI	CAYNNNNRTG	1 cut(s)	491
MspR9I	CCNGG	1 cut(s)	304
MvaI	CCWGG	1 cut(s)	304
MvnI	CGCG	2 cut(s)	237, 567
MwoI	GCNNNNNNNGC	3 cut(s)	66, 410, 571
NdeI	CATATG	1 cut(s)	561
NdeII	GATC	2 cut(s)	274, 475
NlaIII	CATG	2 cut(s)	248, 490
NmuCI	GTSAC	1 cut(s)	268
NspV	TTCGAA	1 cut(s)	142
PagI	TCATGA	1 cut(s)	486
PaqCI	CACCTGC	1 cut(s)	602
PfeI	GAWTC	3 cut(s)	4, 47, 92
PkrI	GCNGC	2 cut(s)	309, 599
Psp1406I	AACGTT	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	302
PspGI	CCWGG	1 cut(s)	302
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
RseI	CAYNNNNRTG	1 cut(s)	491
SaqAI	TTAA	2 cut(s)	135, 579
SatI	GCNGC	2 cut(s)	308, 598
Sau3AI	GATC	2 cut(s)	274, 475
ScrFI	CCNGG	1 cut(s)	304
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	9 cut(s)	110, 168, 208, 287, 305, 351, 379, 429, 596
SfuI	TTCGAA	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	491
Sse9I	AATT	5 cut(s)	138, 180, 216, 315, 432
SsiI	CCGC	3 cut(s)	86, 237, 567
SspMI	CTAG	1 cut(s)	428
StyD4I	CCNGG	1 cut(s)	302
TaaI	ACNGT	2 cut(s)	148, 556
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	1 cut(s)	142
TasI	AATT	5 cut(s)	138, 180, 216, 315, 432
TfiI	GAWTC	3 cut(s)	4, 47, 92
Tru1I	TTAA	2 cut(s)	135, 579
Tru9I	TTAA	2 cut(s)	135, 579
TscAI	CASTG	2 cut(s)	153, 559
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	2 cut(s)	307, 597
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	475
TspGWI	ACGGA	2 cut(s)	287, 426
TspRI	CASTG	2 cut(s)	153, 559
VneI	GTGCAC	1 cut(s)	240
XapI	RAATTY	3 cut(s)	138, 180, 432
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.