Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0017059

Physical Location & Seq

Genomic Coordinates Reverse (-)

17924534 .. 17927159

Gene Structure 2626 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1196600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGATTCCTGAATATGACTATCTTTTCAAACTTTTGCTCATTGGAGATTCCGGCGTTGGCAAGTCATGCCTTCTACTGAGATTTGCGGATGATTCTTACATTGACAGCTACATAAGTACCATTGGTGTTGACTTTAAAATTCGAACGGTGGAGCAGGACGGGAAGGTTGTCAAACTTCAAATCTGGGACACTGCTGGTCAAGAACGTTTCAGAACAATTACAAGTAGCTACTACCGTGGTGCCCATGGCATTATTCTTGTCTATGATGTCACGGACCAAGAAAGCTTCAACAACGTCAAGACCTGGCTGCAAGAAATTAATAAATTTGCAGTTGGAAATGTGAACAAGCTCTTGGTTGGAAACAAAAGTGACTTGGCTGACAAGAAAGTGGTCTCTTCTGAAGCTAGCAAGGCATTTGCCGATGAGCTAGGTATTCCATTCTTGGAAACGAGCGCCAAAAATTCGACCAACGTAGAGCAGGCATTCATGACTATGGTTGCAGAGATAAAGAACAGGATAGCTACGCAACCAATGAGTGCCAACAAACCATCCACCGTGCACATGCGTGGACAGCCGGTCACCCAAAAGACCACCTGCTGCTCATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006888 GO:0007275 GO:0008150 GO:0009506 GO:0009555 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0022414 GO:0030054 GO:0030154 GO:0031090 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046907 GO:0048193 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0055044 GO:0060560 GO:0071840 GO:0071944 GO:0098588 GO:0098791 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

Ras

Protein Analysis

203

Amino Acids

22.47

Weight (kDa)

6.73

Isoelectric Point (pI)

28.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 131	2e-16	ADP-ribosylation factor family
Ras	PF00071	10 - 170	1.1e-66	Ras family
Roc	PF08477	10 - 124	8e-36	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	45 - 168	9.2e-06	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0017059)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32920
malus_domestica	MD09G1196600.v1.1
prunus_persica	Prupe.3G053000_v2.0.a1
pyrus_communis	pycom09g11370
rosa_chinensis	RchiOBHm_Chr2g0142371
rosa_laevigata	RLG00000019955
rosa_multiflora	Rmu_sc0001211.1_g000034
rosa_roxburghii	Rroxscaffold_2G00102680 Rroxscaffold_2G00103240
rosa_rugosa	Rorug02G0372400
rosa_samantha	Rh2AG424100 Rh2CG410700
rosa_wichuraiana	Rw0G014990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	602
Acc36I	ACCTGC	1 cut(s)	602
AccB1I	GGYRCC	1 cut(s)	239
AciI	CCGC	1 cut(s)	86
AclI	AACGTT	1 cut(s)	205
AcsI	RAATTY	3 cut(s)	138, 323, 460
AcuI	CTGAAG	1 cut(s)	420
AfaI	GTAC	1 cut(s)	118
AgsI	TTSAA	3 cut(s)	28, 179, 289
AhdI	GACNNNNNGTC	1 cut(s)	575
AjnI	CCWGG	1 cut(s)	302
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AleI	CACNNNNGTG	1 cut(s)	564
AluBI	AGCT	7 cut(s)	108, 228, 285, 349, 404, 427, 521
AluI	AGCT	7 cut(s)	108, 228, 285, 349, 404, 427, 521
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	1 cut(s)	397
Alw44I	GTGCAC	1 cut(s)	557
ApaLI	GTGCAC	1 cut(s)	557
ApeKI	GCWGC	2 cut(s)	307, 597
ApoI	RAATTY	3 cut(s)	138, 323, 460
AseI	ATTAAT	1 cut(s)	318
AspLEI	GCGC	1 cut(s)	455
AspS9I	GGNCC	1 cut(s)	274
AsuHPI	GGTGA	1 cut(s)	571
AsuII	TTCGAA	1 cut(s)	142
AsuNHI	GCTAGC	1 cut(s)	404
AvaII	GGWCC	1 cut(s)	274
BaeGI	GKGCMC	2 cut(s)	244, 561
BaeI	ACNNNNGTAYC	2 cut(s)	100, 133
BanI	GGYRCC	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	2 cut(s)	294, 584
BccI	CCATC	1 cut(s)	556
BciT130I	CCWGG	1 cut(s)	304
BcoDI	GTCTC	1 cut(s)	397
BfaI	CTAG	2 cut(s)	405, 428
BfoI	RGCGCY	1 cut(s)	456
BfuAI	ACCTGC	1 cut(s)	602
BisI	GCNGC	2 cut(s)	308, 598
BlsI	GCNGC	2 cut(s)	309, 599
Bme1390I	CCNGG	1 cut(s)	304
Bme18I	GGWCC	1 cut(s)	274
BmeRI	GACNNNNNGTC	1 cut(s)	575
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	304
BmtI	GCTAGC	1 cut(s)	408
Bpu14I	TTCGAA	1 cut(s)	142
BsaI	GGTCTC	1 cut(s)	397
BsaJI	CCNNGG	2 cut(s)	235, 244
Bse118I	RCCGGY	1 cut(s)	574
BseBI	CCWGG	1 cut(s)	304
BseDI	CCNNGG	2 cut(s)	235, 244
BseGI	GGATG	3 cut(s)	94, 548, 602
BseMII	CTCAG	1 cut(s)	68
BseSI	GKGCMC	2 cut(s)	244, 561
BseXI	GCAGC	2 cut(s)	294, 584
BshNI	GGYRCC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	561
BsiSI	CCGG	2 cut(s)	51, 575
BslFI	GGGAC	1 cut(s)	200
BsmAI	GTCTC	1 cut(s)	397
BsmFI	GGGAC	1 cut(s)	200
BsmI	GAATGC	1 cut(s)	482
Bso31I	GGTCTC	1 cut(s)	397
Bsp119I	TTCGAA	1 cut(s)	142
Bsp1286I	GDGCHC	2 cut(s)	244, 561
Bsp19I	CCATGG	1 cut(s)	244
BspACI	CCGC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	69
BspHI	TCATGA	1 cut(s)	486
BspLI	GGNNCC	1 cut(s)	241
BspMI	ACCTGC	1 cut(s)	602
BspOI	GCTAGC	1 cut(s)	408
BspT104I	TTCGAA	1 cut(s)	142
BspT107I	GGYRCC	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	397
BsrFI	RCCGGY	1 cut(s)	574
BssAI	RCCGGY	1 cut(s)	574
BssECI	CCNNGG	2 cut(s)	235, 244
BssT1I	CCWWGG	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	304
Bst4CI	ACNGT	3 cut(s)	148, 236, 556
Bst6I	CTCTTC	1 cut(s)	400
BstAPI	GCANNNNNTGC	1 cut(s)	66
BstBI	TTCGAA	1 cut(s)	142
BstC8I	GCNNGC	2 cut(s)	406, 480
BstDEI	CTNAG	1 cut(s)	77
BstDSI	CCRYGG	2 cut(s)	235, 244
BstEII	GGTNACC	1 cut(s)	577
BstF5I	GGATG	3 cut(s)	94, 548, 602
BstH2I	RGCGCY	1 cut(s)	456
BstHHI	GCGC	1 cut(s)	455
BstMAI	GTCTC	1 cut(s)	397
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 410, 571
BstNI	CCWGG	1 cut(s)	304
BstNSI	RCATGY	1 cut(s)	565
BstPI	GGTNACC	1 cut(s)	577
BstSCI	CCNGG	1 cut(s)	302
BstSLI	GKGCMC	2 cut(s)	244, 561
BstV1I	GCAGC	2 cut(s)	294, 584
BtgI	CCRYGG	2 cut(s)	235, 244
BtsCI	GGATG	3 cut(s)	94, 548, 602
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	189
BveI	ACCTGC	1 cut(s)	602
Cac8I	GCNNGC	2 cut(s)	406, 480
CciI	TCATGA	1 cut(s)	486
CfoI	GCGC	1 cut(s)	455
Cfr10I	RCCGGY	1 cut(s)	574
Cfr13I	GGNCC	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	117
CviAII	CATG	4 cut(s)	66, 245, 487, 562
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	1 cut(s)	77
DraI	TTTAAA	1 cut(s)	136
DriI	GACNNNNNGTC	1 cut(s)	575
Eam1104I	CTCTTC	1 cut(s)	400
Eam1105I	GACNNNNNGTC	1 cut(s)	575
EarI	CTCTTC	1 cut(s)	400
Eco130I	CCWWGG	1 cut(s)	244
Eco31I	GGTCTC	1 cut(s)	397
Eco47I	GGWCC	1 cut(s)	274
Eco57I	CTGAAG	1 cut(s)	420
Eco91I	GGTNACC	1 cut(s)	577
EcoO65I	GGTNACC	1 cut(s)	577
EcoRII	CCWGG	1 cut(s)	302
EcoT14I	CCWWGG	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	4 cut(s)	69, 248, 490, 565
FaiI	YATR	8 cut(s)	15, 67, 113, 246, 264, 488, 494, 563
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	4 cut(s)	65, 244, 486, 561
Fnu4HI	GCNGC	2 cut(s)	308, 598
FokI	GGATG	3 cut(s)	101, 535, 589
Fsp4HI	GCNGC	2 cut(s)	308, 598
FspBI	CTAG	2 cut(s)	405, 428
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	2 cut(s)	308, 598
HaeII	RGCGCY	1 cut(s)	456
HapII	CCGG	2 cut(s)	51, 575
HhaI	GCGC	1 cut(s)	455
Hin1II	CATG	4 cut(s)	69, 248, 490, 565
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	283
HinfI	GANTC	3 cut(s)	4, 47, 92
HpaII	CCGG	2 cut(s)	51, 575
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	4 cut(s)	130, 343, 559, 569
Hpy188I	TCNGA	2 cut(s)	212, 400
Hpy188III	TCNNGA	5 cut(s)	8, 200, 298, 487, 606
Hpy8I	GTNNAC	4 cut(s)	130, 343, 559, 569
HpyAV	CCTTC	2 cut(s)	80, 157
HpyCH4III	ACNGT	3 cut(s)	148, 236, 556
HpyCH4IV	ACGT	3 cut(s)	205, 294, 471
HpyCH4V	TGCA	4 cut(s)	310, 329, 500, 559
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 410, 571
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	3 cut(s)	205, 294, 471
Hsp92II	CATG	4 cut(s)	69, 248, 490, 565
HspAI	GCGC	1 cut(s)	453
LmnI	GCTCC	1 cut(s)	151
Lsp1109I	GCAGC	2 cut(s)	294, 584
MaeI	CTAG	2 cut(s)	405, 428
MaeII	ACGT	3 cut(s)	205, 294, 471
MaeIII	GTNAC	3 cut(s)	268, 368, 577
MboII	GAAGA	1 cut(s)	387
MhlI	GDGCHC	2 cut(s)	244, 561
MluCI	AATT	5 cut(s)	138, 216, 315, 323, 460
MmeI	TCCRAC	2 cut(s)	313, 337
MseI	TTAA	2 cut(s)	135, 318
MslI	CAYNNNNRTG	2 cut(s)	491, 564
MspI	CCGG	2 cut(s)	51, 575
MspR9I	CCNGG	1 cut(s)	304
Mva1269I	GAATGC	1 cut(s)	482
MvaI	CCWGG	1 cut(s)	304
MwoI	GCNNNNNNNGC	3 cut(s)	66, 410, 571
NcoI	CCATGG	1 cut(s)	244
NheI	GCTAGC	1 cut(s)	404
NlaIII	CATG	4 cut(s)	69, 248, 490, 565
NlaIV	GGNNCC	1 cut(s)	241
NmuCI	GTSAC	3 cut(s)	268, 368, 577
NspI	RCATGY	1 cut(s)	565
NspV	TTCGAA	1 cut(s)	142
OliI	CACNNNNGTG	1 cut(s)	564
PagI	TCATGA	1 cut(s)	486
PaqCI	CACCTGC	1 cut(s)	602
PctI	GAATGC	1 cut(s)	482
PfeI	GAWTC	3 cut(s)	4, 47, 92
PkrI	GCNGC	2 cut(s)	309, 599
PshBI	ATTAAT	1 cut(s)	318
Psp1406I	AACGTT	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	302
PspEI	GGTNACC	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	302
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	1 cut(s)	274
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
RseI	CAYNNNNRTG	2 cut(s)	491, 564
SaqAI	TTAA	2 cut(s)	135, 318
SatI	GCNGC	2 cut(s)	308, 598
Sau96I	GGNCC	1 cut(s)	274
ScrFI	CCNGG	1 cut(s)	304
SduI	GDGCHC	2 cut(s)	244, 561
SfuI	TTCGAA	1 cut(s)	142
SinI	GGWCC	1 cut(s)	274
SmiMI	CAYNNNNRTG	2 cut(s)	491, 564
Sse9I	AATT	5 cut(s)	138, 216, 315, 323, 460
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	2 cut(s)	405, 428
StyD4I	CCNGG	1 cut(s)	302
StyI	CCWWGG	1 cut(s)	244
TaaI	ACNGT	3 cut(s)	148, 236, 556
TaiI	ACGT	3 cut(s)	208, 297, 474
TaqI	TCGA	2 cut(s)	142, 464
TasI	AATT	5 cut(s)	138, 216, 315, 323, 460
TfiI	GAWTC	3 cut(s)	4, 47, 92
Tru1I	TTAA	2 cut(s)	135, 318
Tru9I	TTAA	2 cut(s)	135, 318
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	3 cut(s)	268, 368, 577
TseI	GCWGC	2 cut(s)	307, 597
Tsp45I	GTSAC	3 cut(s)	268, 368, 577
TspDTI	ATGAA	1 cut(s)	475
TspGWI	ACGGA	1 cut(s)	287
TspRI	CASTG	1 cut(s)	196
VneI	GTGCAC	1 cut(s)	557
VpaK11BI	GGWCC	1 cut(s)	274
VspI	ATTAAT	1 cut(s)	318
XapI	RAATTY	3 cut(s)	138, 323, 460
XceI	RCATGY	1 cut(s)	565
XspI	CTAG	2 cut(s)	405, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.