Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0017059

Physical Location & Seq

Genomic Coordinates Reverse (-)

24934499 .. 24937622

Gene Structure 3124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00102680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGTCATTGTTATGGTGTCATGGTCGTTCGTTGTGTCTTGGTGTGGTCTTTTGTCGATGCTTTACGGTTGTCAATGTGATGGTGAATCACCCTTACACGTGTGATTATCTTTTCAAACTTTTGCTTATTGGAGATTCTGGCGTTGGCAAGTCTTGCCTTCTTCTGAGATTTGCGGATGATTCTTACATTGACAGCTACATAAGTACCATTGGTGTTGACTTTAAAATTCGAACTGTGGAGCAGGACGGGAAGGTTGTTAAACTTCAAATTTGGGACACGGCTGGTCAAGAACGTTTCAGAACAATTACAAGCAGCTACTACCGTGGTGCACATGGCATCATCCTTGTCTATGATGTCACGGATCAAGAGAGCTTCAACAACGTGAAGACCTGGCTGCAAGAAATTGATAAATTTGCTGTTGGAAATGTGAACAAGCTGTTGGTTGGAAATAAGTCTGACTTAGCTGACAAGAAAGTGGTATCTTCTGAAGCCAGCAAGGCATTTGCAGATGAGCTAGGAATTCCGTTCTTGGAAACAAGTGCCAAAAACTCCACTAATGTAGACCAAGCATTCATGACTATGGTTACAGAGATAAAGAATAGGATTGCTACTCAACCGATGAGTGCTAACAAGCCATCTACTGTGCATATGCGCGGACAGCCAGTTAACCAGAAGAACACCTGCTGCTCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006888 GO:0007275 GO:0008150 GO:0009506 GO:0009555 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0022414 GO:0030054 GO:0030154 GO:0031090 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046907 GO:0048193 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0055044 GO:0060560 GO:0071840 GO:0071944 GO:0098588 GO:0098791 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

Ras

Protein Analysis

231

Amino Acids

25.75

Weight (kDa)

8.07

Isoelectric Point (pI)

29.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	38 - 160	5.7e-16	ADP-ribosylation factor family
Ras	PF00071	39 - 199	2.5e-66	Ras family
Roc	PF08477	39 - 153	1.6e-35	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017059)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32920
malus_domestica	MD09G1196600.v1.1
prunus_persica	Prupe.3G053000_v2.0.a1
pyrus_communis	pycom09g11370
rosa_chinensis	RchiOBHm_Chr2g0142371
rosa_laevigata	RLG00000019955
rosa_multiflora	Rmu_sc0001211.1_g000034
rosa_roxburghii	Rroxscaffold_2G00102680 Rroxscaffold_2G00103240
rosa_rugosa	Rorug02G0372400
rosa_samantha	Rh2AG424100 Rh2CG410700
rosa_wichuraiana	Rw0G014990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	689
Acc36I	ACCTGC	1 cut(s)	689
AccI	GTMKAC	1 cut(s)	561
AccII	CGCG	1 cut(s)	654
AciI	CCGC	2 cut(s)	173, 654
AclI	AACGTT	1 cut(s)	292
AclWI	GGATC	1 cut(s)	369
AcsI	RAATTY	4 cut(s)	225, 267, 410, 519
AcuI	CTGAAG	1 cut(s)	507
AcvI	CACGTG	1 cut(s)	99
AfaI	GTAC	1 cut(s)	205
AflIII	ACRYGT	2 cut(s)	96, 98
AgsI	TTSAA	3 cut(s)	115, 266, 376
AjnI	CCWGG	1 cut(s)	389
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AluBI	AGCT	6 cut(s)	195, 315, 372, 436, 464, 514
AluI	AGCT	6 cut(s)	195, 315, 372, 436, 464, 514
Alw21I	GWGCWC	1 cut(s)	331
Alw44I	GTGCAC	1 cut(s)	327
AlwI	GGATC	1 cut(s)	369
ApaLI	GTGCAC	1 cut(s)	327
ApeKI	GCWGC	3 cut(s)	312, 394, 684
ApoI	RAATTY	1 cut(s)	353
AspLEI	GCGC	1 cut(s)	654
AsuHPI	GGTGA	2 cut(s)	80, 94
AsuII	TTCGAA	1 cut(s)	229
BaeGI	GKGCMC	1 cut(s)	331
BaeI	ACNNNNGTAYC	2 cut(s)	187, 220
BbrPI	CACGTG	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	331
BbvI	GCAGC	3 cut(s)	324, 381, 671
BccI	CCATC	2 cut(s)	73, 643
BceAI	ACGGC	1 cut(s)	294
BciT130I	CCWGG	1 cut(s)	391
BfaI	CTAG	1 cut(s)	515
BfuAI	ACCTGC	1 cut(s)	689
BglI	GCCNNNNNGGC	1 cut(s)	497
BisI	GCNGC	3 cut(s)	313, 395, 685
BlsI	GCNGC	3 cut(s)	314, 396, 686
Bme1390I	CCNGG	1 cut(s)	391
BmrFI	CCNGG	1 cut(s)	391
BmsI	GCATC	2 cut(s)	47, 345
BpiI	GAAGAC	1 cut(s)	392
Bpu14I	TTCGAA	1 cut(s)	229
BsaAI	YACGTR	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	322
Bse1I	ACTGG	1 cut(s)	662
BseBI	CCWGG	1 cut(s)	391
BseDI	CCNNGG	1 cut(s)	322
BseGI	GGATG	2 cut(s)	181, 339
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	662
BseSI	GKGCMC	1 cut(s)	331
BseXI	GCAGC	3 cut(s)	324, 381, 671
Bsh1236I	CGCG	1 cut(s)	654
BsiHKAI	GWGCWC	1 cut(s)	331
BslFI	GGGAC	1 cut(s)	287
BsmFI	GGGAC	1 cut(s)	287
BsmI	GAATGC	1 cut(s)	569
Bsp119I	TTCGAA	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp143I	GATC	1 cut(s)	361
BspACI	CCGC	2 cut(s)	173, 654
BspCNI	CTCAG	1 cut(s)	156
BspFNI	CGCG	1 cut(s)	654
BspHI	TCATGA	1 cut(s)	573
BspMI	ACCTGC	1 cut(s)	689
BspPI	GGATC	1 cut(s)	369
BspT104I	TTCGAA	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	662
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	1 cut(s)	361
Bst2UI	CCWGG	1 cut(s)	391
Bst4CI	ACNGT	4 cut(s)	67, 235, 323, 643
BstAPI	GCANNNNNTGC	1 cut(s)	153
BstBAI	YACGTR	1 cut(s)	99
BstBI	TTCGAA	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	493
BstDEI	CTNAG	2 cut(s)	164, 460
BstDSI	CCRYGG	1 cut(s)	322
BstF5I	GGATG	2 cut(s)	181, 339
BstFNI	CGCG	1 cut(s)	654
BstHHI	GCGC	1 cut(s)	654
BstKTI	GATC	1 cut(s)	364
BstMBI	GATC	1 cut(s)	361
BstMWI	GCNNNNNNNGC	3 cut(s)	153, 497, 658
BstNI	CCWGG	1 cut(s)	391
BstSCI	CCNGG	1 cut(s)	389
BstSLI	GKGCMC	1 cut(s)	331
BstUI	CGCG	1 cut(s)	654
BstV1I	GCAGC	3 cut(s)	324, 381, 671
BstV2I	GAAGAC	1 cut(s)	392
BtgI	CCRYGG	1 cut(s)	322
BtsCI	GGATG	2 cut(s)	181, 339
BveI	ACCTGC	1 cut(s)	689
Cac8I	GCNNGC	1 cut(s)	493
CciI	TCATGA	1 cut(s)	573
CfoI	GCGC	1 cut(s)	654
Csp6I	GTAC	1 cut(s)	204
CviAII	CATG	3 cut(s)	20, 332, 574
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	2 cut(s)	164, 460
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
DraI	TTTAAA	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	507
Eco72I	CACGTG	1 cut(s)	99
EcoRI	GAATTC	1 cut(s)	519
EcoRII	CCWGG	1 cut(s)	389
FaeI	CATG	3 cut(s)	23, 335, 577
FaiI	YATR	9 cut(s)	13, 21, 200, 333, 351, 575, 581, 648, 650
FalI	AAGNNNNNCTT	2 cut(s)	443, 475
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	3 cut(s)	19, 331, 573
FauNDI	CATATG	1 cut(s)	648
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	3 cut(s)	313, 395, 685
FokI	GGATG	2 cut(s)	188, 326
Fsp4HI	GCNGC	3 cut(s)	313, 395, 685
FspBI	CTAG	1 cut(s)	515
GlaI	GCGC	1 cut(s)	653
GluI	GCNGC	3 cut(s)	313, 395, 685
HhaI	GCGC	1 cut(s)	654
Hin1II	CATG	3 cut(s)	23, 335, 577
Hin6I	GCGC	1 cut(s)	652
HinP1I	GCGC	1 cut(s)	652
HincII	GTYRAC	2 cut(s)	217, 667
HindII	GTYRAC	2 cut(s)	217, 667
HinfI	GANTC	3 cut(s)	85, 134, 179
HpaI	GTTAAC	1 cut(s)	667
HphI	GGTGA	2 cut(s)	80, 94
Hpy166II	GTNNAC	5 cut(s)	217, 329, 430, 562, 667
Hpy188I	TCNGA	4 cut(s)	165, 299, 457, 487
Hpy188III	TCNNGA	4 cut(s)	287, 365, 574, 693
Hpy8I	GTNNAC	5 cut(s)	217, 329, 430, 562, 667
HpyAV	CCTTC	2 cut(s)	167, 244
HpyCH4III	ACNGT	4 cut(s)	67, 235, 323, 643
HpyCH4IV	ACGT	3 cut(s)	98, 292, 381
HpyCH4V	TGCA	4 cut(s)	329, 397, 506, 646
HpyF10VI	GCNNNNNNNGC	3 cut(s)	153, 497, 658
HpyF3I	CTNAG	2 cut(s)	164, 460
HpySE526I	ACGT	3 cut(s)	98, 292, 381
Hsp92II	CATG	3 cut(s)	23, 335, 577
HspAI	GCGC	1 cut(s)	652
KspAI	GTTAAC	1 cut(s)	667
Kzo9I	GATC	1 cut(s)	361
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	8 cut(s)	123, 227, 267, 376, 403, 505, 675, 683
Lsp1109I	GCAGC	3 cut(s)	324, 381, 671
LweI	GCATC	2 cut(s)	47, 345
MaeI	CTAG	1 cut(s)	515
MaeII	ACGT	3 cut(s)	98, 292, 381
MaeIII	GTNAC	2 cut(s)	355, 583
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MboII	GAAGA	4 cut(s)	152, 397, 474, 685
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	6 cut(s)	225, 267, 303, 402, 410, 519
MmeI	TCCRAC	2 cut(s)	400, 424
MseI	TTAA	3 cut(s)	222, 258, 666
MslI	CAYNNNNRTG	2 cut(s)	10, 578
MspR9I	CCNGG	1 cut(s)	391
Mva1269I	GAATGC	1 cut(s)	569
MvaI	CCWGG	1 cut(s)	391
MvnI	CGCG	1 cut(s)	654
MwoI	GCNNNNNNNGC	3 cut(s)	153, 497, 658
NdeI	CATATG	1 cut(s)	648
NdeII	GATC	1 cut(s)	361
NlaIII	CATG	3 cut(s)	23, 335, 577
NmuCI	GTSAC	1 cut(s)	355
NspV	TTCGAA	1 cut(s)	229
PagI	TCATGA	1 cut(s)	573
PaqCI	CACCTGC	1 cut(s)	689
PctI	GAATGC	1 cut(s)	569
PfeI	GAWTC	3 cut(s)	85, 134, 179
PkrI	GCNGC	3 cut(s)	314, 396, 686
PmaCI	CACGTG	1 cut(s)	99
PmlI	CACGTG	1 cut(s)	99
Ppu21I	YACGTR	1 cut(s)	99
Psp1406I	AACGTT	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	389
PspCI	CACGTG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
RseI	CAYNNNNRTG	2 cut(s)	10, 578
SaqAI	TTAA	3 cut(s)	222, 258, 666
SatI	GCNGC	3 cut(s)	313, 395, 685
Sau3AI	GATC	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	391
SduI	GDGCHC	1 cut(s)	331
SfaNI	GCATC	2 cut(s)	47, 345
SfuI	TTCGAA	1 cut(s)	229
SmiMI	CAYNNNNRTG	2 cut(s)	10, 578
Sse9I	AATT	6 cut(s)	225, 267, 303, 402, 410, 519
SsiI	CCGC	2 cut(s)	173, 654
SspMI	CTAG	1 cut(s)	515
StyD4I	CCNGG	1 cut(s)	389
TaaI	ACNGT	4 cut(s)	67, 235, 323, 643
TaiI	ACGT	3 cut(s)	101, 295, 384
TaqI	TCGA	2 cut(s)	55, 229
TasI	AATT	6 cut(s)	225, 267, 303, 402, 410, 519
TfiI	GAWTC	3 cut(s)	85, 134, 179
Tru1I	TTAA	3 cut(s)	222, 258, 666
Tru9I	TTAA	3 cut(s)	222, 258, 666
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	3 cut(s)	312, 394, 684
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	1 cut(s)	562
TspGWI	ACGGA	2 cut(s)	374, 513
VneI	GTGCAC	1 cut(s)	327
XapI	RAATTY	4 cut(s)	225, 267, 410, 519
XmiI	GTMKAC	1 cut(s)	561
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.