Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0017059

Physical Location & Seq

Genomic Coordinates Reverse (-)

9614120 .. 9615773

Gene Structure 1654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g11370.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGAATCAAATATGCAGGGCTCTAATTAGTTATCTTCCCCCATTTGGCAGTGATTATCTTTTCAAACTTTTGCTCATTGGAGATTCCGGCGTTGGCAAGTCATGCCTTCTACTGAGATTTGCGGATGATTCTTACATTGACAGCTACATAAGTACCATTGGTGTTGACTTTAAAATTCGAACGGTGGAGCAGGACGGGAAGGTTGTCAAACTTCAAATCTGGGACACTGCTGGTCAAGAACGCTTCAGAACAATTACAAGTAGCTACTACCGTGGCGCCCATGGCATTATCCTTGTCTATGATGTCACGGACCAAGAAAGCTTCAACAACGTCAAGACCTGGCTGCAAGAAATTAATAAATTTGCAGTTGGAAATGTGAACAAGCTCTTGGTTGGAAACAAAAGTGACTTGGCTGACAAGAAAGTGGTCTCTTCTGAAGCTAGCAAGGCATTTGCCGATGAGCTAGGTATTCCATTCTTGGAAACGAGCGCCAAAAATTCGACCAATGTAGAGCAGGCATTCATGACTATGGTTGCAGAGATAAAGAACAGGATAGCTACGCAACCAATGAGTGCCAACAAACCATCCACCGTGCACATGCGCGGACAGCCGGTCTCCCAAAAGACCACCTGCTGCTCATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006888 GO:0007275 GO:0008150 GO:0009506 GO:0009555 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0022414 GO:0030054 GO:0030154 GO:0031090 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046907 GO:0048193 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0055044 GO:0060560 GO:0071840 GO:0071944 GO:0098588 GO:0098791 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

Ras

Protein Analysis

215

Amino Acids

23.71

Weight (kDa)

8.28

Isoelectric Point (pI)

30.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017059)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32920
malus_domestica	MD09G1196600.v1.1
prunus_persica	Prupe.3G053000_v2.0.a1
pyrus_communis	pycom09g11370
rosa_chinensis	RchiOBHm_Chr2g0142371
rosa_laevigata	RLG00000019955
rosa_multiflora	Rmu_sc0001211.1_g000034
rosa_roxburghii	Rroxscaffold_2G00102680 Rroxscaffold_2G00103240
rosa_rugosa	Rorug02G0372400
rosa_samantha	Rh2AG424100 Rh2CG410700
rosa_wichuraiana	Rw0G014990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	638
Acc36I	ACCTGC	1 cut(s)	638
AccB1I	GGYRCC	1 cut(s)	275
AccII	CGCG	1 cut(s)	603
AciI	CCGC	2 cut(s)	122, 603
AcsI	RAATTY	3 cut(s)	174, 359, 496
AcuI	CTGAAG	2 cut(s)	229, 456
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	1 cut(s)	154
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	3 cut(s)	64, 215, 325
AhdI	GACNNNNNGTC	1 cut(s)	611
AjnI	CCWGG	1 cut(s)	338
AjuI	GAANNNNNNNTTGG	2 cut(s)	371, 403
AluBI	AGCT	7 cut(s)	144, 264, 321, 385, 440, 463, 557
AluI	AGCT	7 cut(s)	144, 264, 321, 385, 440, 463, 557
Alw21I	GWGCWC	1 cut(s)	597
Alw26I	GTCTC	2 cut(s)	433, 619
Alw44I	GTGCAC	1 cut(s)	593
ApaLI	GTGCAC	1 cut(s)	593
ApeKI	GCWGC	2 cut(s)	343, 633
ApoI	RAATTY	3 cut(s)	174, 359, 496
AseI	ATTAAT	1 cut(s)	354
AspLEI	GCGC	3 cut(s)	278, 491, 603
AspS9I	GGNCC	1 cut(s)	310
AsuII	TTCGAA	1 cut(s)	178
AsuNHI	GCTAGC	1 cut(s)	440
AvaII	GGWCC	1 cut(s)	310
BaeGI	GKGCMC	1 cut(s)	597
BaeI	ACNNNNGTAYC	2 cut(s)	136, 169
BanI	GGYRCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	22
Bbv12I	GWGCWC	1 cut(s)	597
BbvI	GCAGC	2 cut(s)	330, 620
BccI	CCATC	1 cut(s)	592
BciT130I	CCWGG	1 cut(s)	340
BcoDI	GTCTC	2 cut(s)	433, 619
BfaI	CTAG	2 cut(s)	441, 464
BfoI	RGCGCY	2 cut(s)	279, 492
BfuAI	ACCTGC	1 cut(s)	638
BisI	GCNGC	2 cut(s)	344, 634
BlsI	GCNGC	2 cut(s)	345, 635
Bme1390I	CCNGG	1 cut(s)	340
Bme18I	GGWCC	1 cut(s)	310
BmeRI	GACNNNNNGTC	1 cut(s)	611
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	340
BmtI	GCTAGC	1 cut(s)	444
Bpu14I	TTCGAA	1 cut(s)	178
BsaHI	GRCGYC	1 cut(s)	276
BsaI	GGTCTC	2 cut(s)	433, 619
BsaJI	CCNNGG	2 cut(s)	271, 280
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse118I	RCCGGY	1 cut(s)	610
BseBI	CCWGG	1 cut(s)	340
BseDI	CCNNGG	2 cut(s)	271, 280
BseGI	GGATG	3 cut(s)	130, 584, 638
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	104
BseSI	GKGCMC	1 cut(s)	597
BseXI	GCAGC	2 cut(s)	330, 620
Bsh1236I	CGCG	1 cut(s)	603
BshNI	GGYRCC	1 cut(s)	275
BsiHKAI	GWGCWC	1 cut(s)	597
BsiSI	CCGG	2 cut(s)	87, 611
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	2 cut(s)	433, 619
BsmFI	GGGAC	1 cut(s)	236
BsmI	GAATGC	1 cut(s)	518
Bso31I	GGTCTC	2 cut(s)	433, 619
Bsp119I	TTCGAA	1 cut(s)	178
Bsp1286I	GDGCHC	2 cut(s)	22, 597
Bsp19I	CCATGG	1 cut(s)	280
BspACI	CCGC	2 cut(s)	122, 603
BspCNI	CTCAG	1 cut(s)	105
BspFNI	CGCG	1 cut(s)	603
BspHI	TCATGA	1 cut(s)	522
BspLI	GGNNCC	1 cut(s)	277
BspMI	ACCTGC	1 cut(s)	638
BspOI	GCTAGC	1 cut(s)	444
BspT104I	TTCGAA	1 cut(s)	178
BspT107I	GGYRCC	1 cut(s)	275
BspTNI	GGTCTC	2 cut(s)	433, 619
BsrFI	RCCGGY	1 cut(s)	610
BssAI	RCCGGY	1 cut(s)	610
BssECI	CCNNGG	2 cut(s)	271, 280
BssNI	GRCGYC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	280
Bst2UI	CCWGG	1 cut(s)	340
Bst4CI	ACNGT	3 cut(s)	184, 272, 592
Bst6I	CTCTTC	1 cut(s)	436
BstACI	GRCGYC	1 cut(s)	276
BstAPI	GCANNNNNTGC	1 cut(s)	102
BstBI	TTCGAA	1 cut(s)	178
BstC8I	GCNNGC	2 cut(s)	442, 516
BstDEI	CTNAG	1 cut(s)	113
BstDSI	CCRYGG	2 cut(s)	271, 280
BstF5I	GGATG	3 cut(s)	130, 584, 638
BstFNI	CGCG	1 cut(s)	603
BstH2I	RGCGCY	2 cut(s)	279, 492
BstHHI	GCGC	3 cut(s)	278, 491, 603
BstMAI	GTCTC	2 cut(s)	433, 619
BstMWI	GCNNNNNNNGC	4 cut(s)	102, 282, 446, 607
BstNI	CCWGG	1 cut(s)	340
BstNSI	RCATGY	1 cut(s)	601
BstSCI	CCNGG	1 cut(s)	338
BstSLI	GKGCMC	1 cut(s)	597
BstUI	CGCG	1 cut(s)	603
BstV1I	GCAGC	2 cut(s)	330, 620
BtgI	CCRYGG	2 cut(s)	271, 280
BtsCI	GGATG	3 cut(s)	130, 584, 638
BtsI	GCAGTG	2 cut(s)	55, 225
BtsIMutI	CAGTG	2 cut(s)	55, 225
BveI	ACCTGC	1 cut(s)	638
Cac8I	GCNNGC	2 cut(s)	442, 516
CciI	TCATGA	1 cut(s)	522
CfoI	GCGC	3 cut(s)	278, 491, 603
Cfr10I	RCCGGY	1 cut(s)	610
Cfr13I	GGNCC	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	4 cut(s)	102, 281, 523, 598
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	1 cut(s)	113
DinI	GGCGCC	1 cut(s)	277
DraI	TTTAAA	1 cut(s)	172
DriI	GACNNNNNGTC	1 cut(s)	611
Eam1104I	CTCTTC	1 cut(s)	436
Eam1105I	GACNNNNNGTC	1 cut(s)	611
EarI	CTCTTC	1 cut(s)	436
Eco130I	CCWWGG	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	22
Eco31I	GGTCTC	2 cut(s)	433, 619
Eco47I	GGWCC	1 cut(s)	310
Eco57I	CTGAAG	2 cut(s)	229, 456
EcoRII	CCWGG	1 cut(s)	338
EcoT14I	CCWWGG	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	22
EgeI	GGCGCC	1 cut(s)	277
EheI	GGCGCC	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	4 cut(s)	105, 284, 526, 601
FaiI	YATR	8 cut(s)	13, 103, 149, 282, 300, 524, 530, 599
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	4 cut(s)	101, 280, 522, 597
Fnu4HI	GCNGC	2 cut(s)	344, 634
FokI	GGATG	3 cut(s)	137, 571, 625
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	2 cut(s)	344, 634
FspBI	CTAG	2 cut(s)	441, 464
GlaI	GCGC	3 cut(s)	277, 490, 602
GluI	GCNGC	2 cut(s)	344, 634
HaeII	RGCGCY	2 cut(s)	279, 492
HapII	CCGG	2 cut(s)	87, 611
HhaI	GCGC	3 cut(s)	278, 491, 603
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	4 cut(s)	105, 284, 526, 601
Hin6I	GCGC	3 cut(s)	276, 489, 601
HinP1I	GCGC	3 cut(s)	276, 489, 601
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	319
HinfI	GANTC	3 cut(s)	4, 83, 128
HpaII	CCGG	2 cut(s)	87, 611
Hpy166II	GTNNAC	3 cut(s)	166, 379, 595
Hpy188I	TCNGA	2 cut(s)	248, 436
Hpy188III	TCNNGA	4 cut(s)	236, 334, 523, 642
Hpy8I	GTNNAC	3 cut(s)	166, 379, 595
HpyAV	CCTTC	2 cut(s)	116, 193
HpyCH4III	ACNGT	3 cut(s)	184, 272, 592
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	5 cut(s)	15, 346, 365, 536, 595
HpyF10VI	GCNNNNNNNGC	4 cut(s)	102, 282, 446, 607
HpyF3I	CTNAG	1 cut(s)	113
HpySE526I	ACGT	1 cut(s)	330
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	4 cut(s)	105, 284, 526, 601
HspAI	GCGC	3 cut(s)	276, 489, 601
KasI	GGCGCC	1 cut(s)	275
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	9 cut(s)	100, 176, 205, 216, 325, 352, 500, 535, 624
Lsp1109I	GCAGC	2 cut(s)	330, 620
MaeI	CTAG	2 cut(s)	441, 464
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	2 cut(s)	304, 404
MboII	GAAGA	2 cut(s)	26, 423
MhlI	GDGCHC	2 cut(s)	22, 597
MluCI	AATT	6 cut(s)	24, 174, 252, 351, 359, 496
Mly113I	GGCGCC	1 cut(s)	276
MmeI	TCCRAC	2 cut(s)	349, 373
MseI	TTAA	2 cut(s)	171, 354
MslI	CAYNNNNRTG	1 cut(s)	527
MspI	CCGG	2 cut(s)	87, 611
MspR9I	CCNGG	1 cut(s)	340
Mva1269I	GAATGC	1 cut(s)	518
MvaI	CCWGG	1 cut(s)	340
MvnI	CGCG	1 cut(s)	603
MwoI	GCNNNNNNNGC	4 cut(s)	102, 282, 446, 607
NarI	GGCGCC	1 cut(s)	276
NcoI	CCATGG	1 cut(s)	280
NheI	GCTAGC	1 cut(s)	440
NlaIII	CATG	4 cut(s)	105, 284, 526, 601
NlaIV	GGNNCC	1 cut(s)	277
NmuCI	GTSAC	2 cut(s)	304, 404
NspI	RCATGY	1 cut(s)	601
NspV	TTCGAA	1 cut(s)	178
PagI	TCATGA	1 cut(s)	522
PaqCI	CACCTGC	1 cut(s)	638
PctI	GAATGC	1 cut(s)	518
PfeI	GAWTC	3 cut(s)	4, 83, 128
PkrI	GCNGC	2 cut(s)	345, 635
PluTI	GGCGCC	1 cut(s)	279
PshBI	ATTAAT	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	338
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	1 cut(s)	310
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
RseI	CAYNNNNRTG	1 cut(s)	527
SaqAI	TTAA	2 cut(s)	171, 354
SatI	GCNGC	2 cut(s)	344, 634
Sau96I	GGNCC	1 cut(s)	310
ScrFI	CCNGG	1 cut(s)	340
SduI	GDGCHC	2 cut(s)	22, 597
SfoI	GGCGCC	1 cut(s)	277
SfuI	TTCGAA	1 cut(s)	178
SinI	GGWCC	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	527
Sse9I	AATT	6 cut(s)	24, 174, 252, 351, 359, 496
SsiI	CCGC	2 cut(s)	122, 603
SspDI	GGCGCC	1 cut(s)	275
SspMI	CTAG	2 cut(s)	441, 464
StyD4I	CCNGG	1 cut(s)	338
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	3 cut(s)	184, 272, 592
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	2 cut(s)	178, 500
TasI	AATT	6 cut(s)	24, 174, 252, 351, 359, 496
TfiI	GAWTC	3 cut(s)	4, 83, 128
Tru1I	TTAA	2 cut(s)	171, 354
Tru9I	TTAA	2 cut(s)	171, 354
TscAI	CASTG	2 cut(s)	55, 232
TseFI	GTSAC	2 cut(s)	304, 404
TseI	GCWGC	2 cut(s)	343, 633
Tsp45I	GTSAC	2 cut(s)	304, 404
TspDTI	ATGAA	2 cut(s)	17, 511
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	2 cut(s)	55, 232
VneI	GTGCAC	1 cut(s)	593
VpaK11BI	GGWCC	1 cut(s)	310
VspI	ATTAAT	1 cut(s)	354
XapI	RAATTY	3 cut(s)	174, 359, 496
XceI	RCATGY	1 cut(s)	601
XspI	CTAG	2 cut(s)	441, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.