FvH4_6g33050
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0018461
Physical Location & Seq
Reverse (-)
26105397 .. 26108587
3191 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33050.t1

Sequence Viewer

Length: 1200 bp
ATGGTCCTCTCTTATGTATTGCCTACTGAGATCAAAGAAGAAGAGCTTGAATGGAAGAAGGGGTTACCACCTGGAGTCAGGTTTGTGCCTTCACAAGAAGAATTTATTTATTATCTACTAAAGAAGGTTTACACCGGGAAGATTGATTTCGGTGGAGTTATTAGAGACATCGATCTCTATAAATATGAGCCAGATGACCTAAAAGCTTTAGCATTTGAGGGTGAGAGCCGCTTGTACTTCTTCACGCCACTGCAAAAGAAGCATACAAAGGGAACAAGGAAAAAGAGGGACACTGTACATGGTCTTTGGAAGGGAACACAGACGCCTAAAACGATTAAGGACAGTGACAACAAGCCGGTAATAACCAAAACGCCTTTTTGTTACTATCACCCTCGCGGCAAAAATGTAAAGAAAACTCAATGGCTCATGGACGAGTACAGGCTCATCAATCATGACAATCATCACATCATGTTGGAAAATTGGGCACTTTGTGTAGTCCACTATAAGAAAAGAGGGGGAAATGGCAACAACAACGAGAAAGAGGACAACAAGAGTAGGAGTACTAACAAAAGTAGCAGCACTGGTTCGAGATCTGAGGCCATGGGATCTACTTTTCAAACATCGTTGATAGGTTCGGCTTCTGAGTGTGCTTCGACAATGAGCTCACAGAACGGGAATTCTTGCCAAACTCCGACACCTTCCAAAAACAACACTATTCCCTTTGGCTACAGTAACTCAAGTATGGGTTCATCCAGTTCACAGCCACGACCCAACTGGAGTTACAATGTTAACCCAAAGAAGCAGCAGCAGTCTTCCACTTCTGATCAGCCTTTGCTCACCCGAGGTACTTATAATATAGCCTCTCATGATGATCATGATTCCTCTGGTCATGCCCTATTTCCTAAACGTACACCCAGCGGTATTGGCAGCCCCAACTGTGATCAAACCCCAAACTGTTCCAATACGAATGACTTATCCCTCAATAACAATGTATCTGGTGATCAAATGTTATCTGATTTTGATTTCATGAACGACTCAACCTTCTCAGACTTATACACCATGTTGCATGATGAGAGTCTACAGTCGTCACTTCCCCAGCAGAGAGATGATGACACTCAAAACATAAACCCTAGCATCAACCCTCCGGTCCATTTCCTCCTGGTTAACGTTCCTGATGAAATGTATCAATCAAGCAAGTAG

Protein Analysis

400

Amino Acids

45.01

Weight (kDa)

7.18

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 23 - 148 9.9e-30 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018461)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g33050
rosa_laevigata RLG00000019978
rosa_multiflora Rmu_sc0004112.1_g000016
rosa_roxburghii Rroxscaffold_2G00102400
rosa_rugosa Rorug02G0374700
rosa_samantha Rh2AG427000 Rh2BG436300 Rh2CG413500 Rh2DG446200
rosa_wichuraiana Rw2G034980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 852
AccI GTMKAC 1 cut(s) 1078
AccII CGCG 1 cut(s) 396
AciI CCGC 3 cut(s) 229, 396, 918
AclI AACGTT 1 cut(s) 1167
AclWI GGATC 1 cut(s) 613
AcsI RAATTY 2 cut(s) 101, 676
AcyI GRCGYC 1 cut(s) 323
AdeI CACNNNGTG 1 cut(s) 491
AfaI GTAC 6 cut(s) 236, 297, 437, 562, 847, 910
AgsI TTSAA 2 cut(s) 50, 617
AjnI CCWGG 2 cut(s) 70, 1158
AluBI AGCT 3 cut(s) 46, 206, 663
AluI AGCT 3 cut(s) 46, 206, 663
Alw21I GWGCWC 1 cut(s) 665
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 1 cut(s) 613
Ama87I CYCGRG 1 cut(s) 840
AoxI GGCC 1 cut(s) 597
ApeKI GCWGC 4 cut(s) 576, 802, 805, 927
ApoI RAATTY 2 cut(s) 101, 676
AspS9I GGNCC 2 cut(s) 4, 1147
AsuC2I CCSGG 1 cut(s) 136
AsuHPI GGTGA 4 cut(s) 233, 380, 829, 1010
AvaI CYCGRG 1 cut(s) 840
AvaII GGWCC 2 cut(s) 4, 1147
BaeGI GKGCMC 1 cut(s) 487
BanII GRGCYC 1 cut(s) 665
BbsI GAAGAC 1 cut(s) 804
Bbv12I GWGCWC 1 cut(s) 665
BbvI GCAGC 4 cut(s) 588, 814, 817, 939
BciT130I CCWGG 2 cut(s) 72, 1160
BclI TGATCA 4 cut(s) 823, 871, 940, 1000
BcnI CCSGG 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 159
BfaI CTAG 1 cut(s) 1131
BfmI CTRYAG 2 cut(s) 727, 1079
BglII AGATCT 1 cut(s) 590
BisI GCNGC 6 cut(s) 229, 397, 577, 803, 806, 928
BlsI GCNGC 6 cut(s) 230, 398, 578, 804, 807, 929
BmcAI AGTACT 1 cut(s) 562
Bme1390I CCNGG 3 cut(s) 72, 136, 1160
Bme18I GGWCC 2 cut(s) 4, 1147
BmeT110I CYCGRG 1 cut(s) 840
BmgT120I GGNCC 2 cut(s) 4, 1147
BmrFI CCNGG 3 cut(s) 72, 136, 1160
BmsI GCATC 1 cut(s) 1143
BpiI GAAGAC 1 cut(s) 804
BpmI CTGGAG 2 cut(s) 93, 796
BpuEI CTTGAG 1 cut(s) 721
BpuMI CCSGG 1 cut(s) 136
Bsa29I ATCGAT 1 cut(s) 171
BsaHI GRCGYC 1 cut(s) 323
BsaJI CCNNGG 2 cut(s) 600, 841
BsaWI WCCGGW 1 cut(s) 1144
Bse118I RCCGGY 1 cut(s) 355
Bse1I ACTGG 3 cut(s) 586, 753, 779
BseBI CCWGG 2 cut(s) 72, 1160
BseCI ATCGAT 1 cut(s) 171
BseDI CCNNGG 2 cut(s) 600, 841
BseGI GGATG 1 cut(s) 749
BseMII CTCAG 4 cut(s) 18, 585, 633, 1059
BseNI ACTGG 3 cut(s) 586, 753, 779
BseSI GKGCMC 1 cut(s) 487
BseXI GCAGC 4 cut(s) 588, 814, 817, 939
BseYI CCCAGC 2 cut(s) 914, 1095
Bsh1236I CGCG 1 cut(s) 396
BshFI GGCC 1 cut(s) 599
BshVI ATCGAT 1 cut(s) 171
BsiHKAI GWGCWC 1 cut(s) 665
BsiHKCI CYCGRG 1 cut(s) 840
BsiSI CCGG 3 cut(s) 135, 356, 1145
BslFI GGGAC 1 cut(s) 302
BsmAI GTCTC 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 302
BsnI GGCC 1 cut(s) 599
BsoBI CYCGRG 1 cut(s) 840
Bsp1286I GDGCHC 2 cut(s) 487, 665
Bsp1407I TGTACA 1 cut(s) 295
Bsp143I GATC 8 cut(s) 30, 172, 590, 605, 823, 871, 940, 1000
Bsp19I CCATGG 1 cut(s) 600
BspACI CCGC 3 cut(s) 229, 396, 918
BspANI GGCC 1 cut(s) 599
BspCNI CTCAG 4 cut(s) 19, 586, 634, 1058
BspDI ATCGAT 1 cut(s) 171
BspFNI CGCG 1 cut(s) 396
BspHI TCATGA 4 cut(s) 451, 865, 874, 1026
BspPI GGATC 1 cut(s) 613
BspQI GCTCTTC 1 cut(s) 36
BsrFI RCCGGY 1 cut(s) 355
BsrGI TGTACA 1 cut(s) 295
BsrI ACTGG 3 cut(s) 586, 753, 779
BssAI RCCGGY 1 cut(s) 355
BssECI CCNNGG 2 cut(s) 600, 841
BssMI GATC 8 cut(s) 30, 172, 590, 605, 823, 871, 940, 1000
BssNI GRCGYC 1 cut(s) 323
BssT1I CCWWGG 1 cut(s) 600
Bst2UI CCWGG 2 cut(s) 72, 1160
Bst4CI ACNGT 6 cut(s) 295, 344, 731, 938, 956, 1083
Bst6I CTCTTC 1 cut(s) 36
BstACI GRCGYC 1 cut(s) 323
BstAUI TGTACA 1 cut(s) 295
BstDEI CTNAG 4 cut(s) 27, 594, 642, 1045
BstDSI CCRYGG 1 cut(s) 600
BstEII GGTNACC 1 cut(s) 63
BstF5I GGATG 1 cut(s) 749
BstFNI CGCG 1 cut(s) 396
BstKTI GATC 8 cut(s) 33, 175, 593, 608, 826, 874, 943, 1003
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 8 cut(s) 30, 172, 590, 605, 823, 871, 940, 1000
BstMWI GCNNNNNNNGC 2 cut(s) 259, 924
BstNI CCWGG 2 cut(s) 72, 1160
BstPI GGTNACC 1 cut(s) 63
BstSCI CCNGG 3 cut(s) 70, 134, 1158
BstSFI CTRYAG 2 cut(s) 727, 1079
BstSLI GKGCMC 1 cut(s) 487
BstUI CGCG 1 cut(s) 396
BstV1I GCAGC 4 cut(s) 588, 814, 817, 939
BstV2I GAAGAC 1 cut(s) 804
BstX2I RGATCY 2 cut(s) 590, 605
BstYI RGATCY 2 cut(s) 590, 605
Bsu15I ATCGAT 1 cut(s) 171
BsuRI GGCC 1 cut(s) 599
BsuTUI ATCGAT 1 cut(s) 171
BtgI CCRYGG 1 cut(s) 600
BtsCI GGATG 1 cut(s) 749
BtsI GCAGTG 1 cut(s) 248
BtsIMutI CAGTG 4 cut(s) 248, 291, 349, 579
CciI TCATGA 4 cut(s) 451, 865, 874, 1026
Cfr10I RCCGGY 1 cut(s) 355
Cfr13I GGNCC 2 cut(s) 4, 1147
ClaI ATCGAT 1 cut(s) 171
CseI GACGC 1 cut(s) 331
Csp6I GTAC 6 cut(s) 235, 296, 436, 561, 846, 909
CviQI GTAC 6 cut(s) 235, 296, 436, 561, 846, 909
DdeI CTNAG 4 cut(s) 27, 594, 642, 1045
DpnI GATC 8 cut(s) 32, 174, 592, 607, 825, 873, 942, 1002
DpnII GATC 8 cut(s) 30, 172, 590, 605, 823, 871, 940, 1000
DraIII CACNNNGTG 1 cut(s) 491
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Ecl136II GAGCTC 1 cut(s) 663
Eco130I CCWWGG 1 cut(s) 600
Eco24I GRGCYC 1 cut(s) 665
Eco47I GGWCC 2 cut(s) 4, 1147
Eco53kI GAGCTC 1 cut(s) 663
Eco88I CYCGRG 1 cut(s) 840
Eco91I GGTNACC 1 cut(s) 63
EcoICRI GAGCTC 1 cut(s) 663
EcoO65I GGTNACC 1 cut(s) 63
EcoRI GAATTC 1 cut(s) 676
EcoRII CCWGG 2 cut(s) 70, 1158
EcoT14I CCWWGG 1 cut(s) 600
EcoT38I GRGCYC 1 cut(s) 665
ErhI CCWWGG 1 cut(s) 600
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FaqI GGGAC 1 cut(s) 302
FbaI TGATCA 4 cut(s) 823, 871, 940, 1000
FblI GTMKAC 1 cut(s) 1078
Fnu4HI GCNGC 6 cut(s) 229, 397, 577, 803, 806, 928
FokI GGATG 1 cut(s) 736
FriOI GRGCYC 1 cut(s) 665
Fsp4HI GCNGC 6 cut(s) 229, 397, 577, 803, 806, 928
FspBI CTAG 1 cut(s) 1131
GluI GCNGC 6 cut(s) 229, 397, 577, 803, 806, 928
GsaI CCCAGC 2 cut(s) 918, 1099
GsuI CTGGAG 2 cut(s) 93, 796
HaeIII GGCC 1 cut(s) 599
HapII CCGG 3 cut(s) 135, 356, 1145
HgaI GACGC 1 cut(s) 331
Hin1I GRCGYC 1 cut(s) 323
HincII GTYRAC 2 cut(s) 790, 1165
HindII GTYRAC 2 cut(s) 790, 1165
HindIII AAGCTT 1 cut(s) 204
HinfI GANTC 4 cut(s) 75, 878, 1034, 1075
HpaI GTTAAC 2 cut(s) 790, 1165
HpaII CCGG 3 cut(s) 135, 356, 1145
HphI GGTGA 4 cut(s) 233, 380, 829, 1010
Hpy166II GTNNAC 7 cut(s) 130, 499, 758, 790, 911, 1079, 1165
Hpy188I TCNGA 6 cut(s) 595, 643, 693, 823, 1015, 1048
Hpy188III TCNNGA 6 cut(s) 452, 588, 866, 875, 1027, 1172
Hpy8I GTNNAC 7 cut(s) 130, 499, 758, 790, 911, 1079, 1165
HpyAV CCTTC 6 cut(s) 52, 99, 118, 304, 708, 1051
HpyCH4III ACNGT 6 cut(s) 295, 344, 731, 938, 956, 1083
HpyCH4IV ACGT 2 cut(s) 907, 1167
HpyCH4V TGCA 2 cut(s) 253, 1066
HpyF10VI GCNNNNNNNGC 2 cut(s) 259, 924
HpyF3I CTNAG 4 cut(s) 27, 594, 642, 1045
HpySE526I ACGT 2 cut(s) 907, 1167
Hsp92I GRCGYC 1 cut(s) 323
Ksp22I TGATCA 4 cut(s) 823, 871, 940, 1000
KspAI GTTAAC 2 cut(s) 790, 1165
Kzo9I GATC 8 cut(s) 30, 172, 590, 605, 823, 871, 940, 1000
LguI GCTCTTC 1 cut(s) 36
Lsp1109I GCAGC 4 cut(s) 588, 814, 817, 939
LweI GCATC 1 cut(s) 1143
MaeI CTAG 1 cut(s) 1131
MaeII ACGT 2 cut(s) 907, 1167
MaeIII GTNAC 6 cut(s) 63, 344, 380, 731, 779, 1086
MalI GATC 8 cut(s) 32, 174, 592, 607, 825, 873, 942, 1002
MboI GATC 8 cut(s) 30, 172, 590, 605, 823, 871, 940, 1000
MboII GAAGA 7 cut(s) 50, 53, 67, 110, 151, 232, 804
MflI RGATCY 2 cut(s) 590, 605
MhlI GDGCHC 2 cut(s) 487, 665
MluCI AATT 3 cut(s) 101, 478, 676
MlyI GAGTC 3 cut(s) 84, 1028, 1084
MmeI TCCRAC 2 cut(s) 453, 716
MseI TTAA 3 cut(s) 336, 789, 1164
MspA1I CMGCKG 1 cut(s) 918
MspI CCGG 3 cut(s) 135, 356, 1145
MspR9I CCNGG 3 cut(s) 72, 136, 1160
MvaI CCWGG 2 cut(s) 72, 1160
MvnI CGCG 1 cut(s) 396
MwoI GCNNNNNNNGC 2 cut(s) 259, 924
NciI CCSGG 1 cut(s) 136
NcoI CCATGG 1 cut(s) 600
NdeII GATC 8 cut(s) 30, 172, 590, 605, 823, 871, 940, 1000
NmuCI GTSAC 2 cut(s) 344, 1086
PagI TCATGA 4 cut(s) 451, 865, 874, 1026
PciSI GCTCTTC 1 cut(s) 36
PcsI WCGNNNNNNNCGW 1 cut(s) 329
PfeI GAWTC 1 cut(s) 878
PkrI GCNGC 6 cut(s) 230, 398, 578, 804, 807, 929
PleI GAGTC 3 cut(s) 83, 1028, 1083
PpsI GAGTC 3 cut(s) 83, 1028, 1083
PsiI TTATAA 1 cut(s) 852
Psp124BI GAGCTC 1 cut(s) 665
Psp1406I AACGTT 1 cut(s) 1167
Psp6I CCWGG 2 cut(s) 70, 1158
PspEI GGTNACC 1 cut(s) 63
PspFI CCCAGC 2 cut(s) 914, 1095
PspGI CCWGG 2 cut(s) 70, 1158
PspPI GGNCC 2 cut(s) 4, 1147
PsuI RGATCY 2 cut(s) 590, 605
RsaI GTAC 6 cut(s) 236, 297, 437, 562, 847, 910
RsaNI GTAC 6 cut(s) 235, 296, 436, 561, 846, 909
SacI GAGCTC 1 cut(s) 665
SapI GCTCTTC 1 cut(s) 36
SaqAI TTAA 3 cut(s) 336, 789, 1164
SatI GCNGC 6 cut(s) 229, 397, 577, 803, 806, 928
Sau3AI GATC 8 cut(s) 30, 172, 590, 605, 823, 871, 940, 1000
Sau96I GGNCC 2 cut(s) 4, 1147
ScaI AGTACT 1 cut(s) 562
SchI GAGTC 3 cut(s) 84, 1028, 1084
ScrFI CCNGG 3 cut(s) 72, 136, 1160
SduI GDGCHC 2 cut(s) 487, 665
SfaNI GCATC 1 cut(s) 1143
SfcI CTRYAG 2 cut(s) 727, 1079
SinI GGWCC 2 cut(s) 4, 1147
SmlI CTYRAG 1 cut(s) 736
SmoI CTYRAG 1 cut(s) 736
Sse9I AATT 3 cut(s) 101, 478, 676
SsiI CCGC 3 cut(s) 229, 396, 918
SspMI CTAG 1 cut(s) 1131
SstI GAGCTC 1 cut(s) 665
StyD4I CCNGG 3 cut(s) 70, 134, 1158
StyI CCWWGG 1 cut(s) 600
TaaI ACNGT 6 cut(s) 295, 344, 731, 938, 956, 1083
TaiI ACGT 2 cut(s) 910, 1170
TaqI TCGA 3 cut(s) 171, 587, 653
TasI AATT 3 cut(s) 101, 478, 676
TatI WGTACW 4 cut(s) 234, 295, 435, 560
TauI GCSGC 2 cut(s) 231, 399
TfiI GAWTC 1 cut(s) 878
Tru1I TTAA 3 cut(s) 336, 789, 1164
Tru9I TTAA 3 cut(s) 336, 789, 1164
TscAI CASTG 4 cut(s) 255, 298, 349, 586
TseFI GTSAC 2 cut(s) 344, 1086
TseI GCWGC 4 cut(s) 576, 802, 805, 927
Tsp45I GTSAC 2 cut(s) 344, 1086
TspDTI ATGAA 4 cut(s) 738, 1015, 1043, 1191
TspRI CASTG 4 cut(s) 255, 298, 349, 586
VpaK11BI GGWCC 2 cut(s) 4, 1147
XapI RAATTY 2 cut(s) 101, 676
XcmI CCANNNNNNNNNTGG 1 cut(s) 771
XmiI GTMKAC 1 cut(s) 1078
XspI CTAG 1 cut(s) 1131
ZrmI AGTACT 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.