Rorug02G0374700

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0018461
Physical Location & Seq
Reverse (-)
47746001 .. 47747338
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0374700.1

Sequence Viewer

Length: 1338 bp
ATGTCACTCATTTCCTCACCACCATCATTACTCTTGCTGCTCTTTCTCATGTTTTTTTGGGCATTGGCCACGCCTTTCACGGTAATTATGTCCGATTCAGGCGGGCCTAACGCCCTTATAGACGGACCGCAGACCGGGTTCTCCATCAACAAAGACGGGGCTCGAACCGATGCCCGTGAGCAAGAGGCGGTCTACGACATCATGCGTGCCACGGGCAATGAATGGGCCACTGACATCCCGGACGTGTGTCGTGGCCGTTGGCACGGGATTGAGTGCATGCCCGACAAGAACAATGTTTTCCACGTCGTCTCCCTCTCCTTTGGAGCCTTGTCAGACGACACCGCCTTCCCGACTTGCGACCCGACCCGGTCACATATTTCGCCGTCCATCACTAGGCTCCATTACCTCCGGACCCTCTTTTTCTACCGTTGTTTCAGTTACAACCCCCAGCCAATCCCGTCATTTCTCGGCCAATTGGGTCCCACTCTGCAAACACTAGTGCTTAGAGACAACGGGCACGTGGGTCCCATACCTATTGAGCTGGGCAATCTCACCCGTTTAAAGGTTCTCGACCTCCACAAAAACAATCTCAACGGTTCAATTCCGGTCTCATTAAACTGTATCACCGGTCTAAGGTCGTTAGACTTGAGCAATAATGCTCTAACCGGTTCAATACCGAATTTCAGCTTCCCTATATTGAGCATCCTTGACATGAGCCAAAATCTTCTAGCCGGCTCAATCCCCTCCCGAATCGGAGCCTGCCTTTCTCTTCTCAAGATGGATTTGAGCCACAACCGGCTCACTGGATCGATACCCGACTCCATCGGCGGCCTAAAAGACCTCATGCTCATGGATTTGAGCTACAATCGCCTCAAGGGTCCTCTCCCAATGTGGTTTGGAACCTTGGTGTCTCTTCAAACTCTGAACCTCAAAGGCAACCCTATGGGACCGACACAAATTCCAAGTGAAGGATTTGAAGGTATGAAGGGTTTAATGATTCTGATCTTATCAAACATGAATCTACATGGTCCTATACCTTCATCGATAGGTCACTTGCCAAGCCTTCGAGTGCTTCATCTTGATGGCAACCACTTGAATGGTTCAATCCCAAATAGCTTTCGAGAGCTTAAGAGCGTTGGTGAGTTGAGATTAAACGACAATGGACTAGTTGGGTCAATTCCATTTGGGAGAGAAATGGTTTGGAGGATGAGAAGGAAGCTTAGGCTTTACAATAATTCAGGGCTTTGTTATACTGCTAATAGCGGTTTTGAAGACAACCTGGATTCGTCTTCCAGTTTTGGGATTGGTCCATGCGACCCACCGAGACCGAGGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

445

Amino Acids

48.72

Weight (kDa)

7.65

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 161 - 221 2.3e-07 Leucine rich repeat
LRR_14 PF23598 211 - 385 6.7e-10 Leucine-rich repeat region
LRR_8 PF13855 257 - 314 3.5e-10 Leucine rich repeat
LRR_8 PF13855 318 - 365 4.5e-07 Leucine rich repeat
LRR_8 PF13855 330 - 389 9.4e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018461)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g33050
rosa_laevigata RLG00000019978
rosa_multiflora Rmu_sc0004112.1_g000016
rosa_roxburghii Rroxscaffold_2G00102400
rosa_rugosa Rorug02G0374700
rosa_samantha Rh2AG427000 Rh2BG436300 Rh2CG413500 Rh2DG446200
rosa_wichuraiana Rw2G034980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 192
AccIII TCCGGA 1 cut(s) 408
AciI CCGC 6 cut(s) 102, 128, 188, 342, 828, 1263
AclWI GGATC 1 cut(s) 814
AcoI YGGCCR 3 cut(s) 66, 253, 469
AcsI RAATTY 2 cut(s) 679, 957
AcvI CACGTG 1 cut(s) 520
AfiI CCNNNNNNNGG 6 cut(s) 134, 393, 562, 633, 968, 1299
AflII CTTAAG 1 cut(s) 1127
AflIII ACRYGT 1 cut(s) 243
AgeI ACCGGT 2 cut(s) 626, 665
AgsI TTSAA 7 cut(s) 600, 672, 917, 977, 1096, 1104, 1271
AhlI ACTAGT 2 cut(s) 496, 1165
AjiI CACGTC 2 cut(s) 244, 304
AjnI CCWGG 1 cut(s) 1278
AluBI AGCT 6 cut(s) 541, 687, 861, 1116, 1126, 1219
AluI AGCT 6 cut(s) 541, 687, 861, 1116, 1126, 1219
Alw26I GTCTC 5 cut(s) 313, 501, 613, 915, 1318
AlwI GGATC 1 cut(s) 814
Aor13HI TCCGGA 1 cut(s) 408
AoxI GGCC 7 cut(s) 66, 104, 225, 253, 469, 829, 1331
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 2 cut(s) 679, 957
AsiGI ACCGGT 2 cut(s) 626, 665
AsuC2I CCSGG 3 cut(s) 136, 239, 367
AsuHPI GGTGA 4 cut(s) 9, 544, 616, 1151
AvaII GGWCC 8 cut(s) 125, 411, 479, 524, 878, 947, 1028, 1307
BaeGI GKGCMC 1 cut(s) 519
BalI TGGCCA 1 cut(s) 68
BanII GRGCYC 1 cut(s) 163
BbrPI CACGTG 1 cut(s) 520
BbsI GAAGAC 2 cut(s) 1278, 1281
BbvI GCAGC 1 cut(s) 24
BccI CCATC 6 cut(s) 31, 152, 395, 772, 830, 1076
BceAI ACGGC 2 cut(s) 240, 367
BciT130I CCWGG 1 cut(s) 1280
BcnI CCSGG 3 cut(s) 136, 239, 367
BcoDI GTCTC 5 cut(s) 313, 501, 613, 915, 1318
BcuI ACTAGT 2 cut(s) 496, 1165
BfaI CTAG 4 cut(s) 393, 497, 728, 1166
BfrI CTTAAG 1 cut(s) 1127
BisI GCNGC 2 cut(s) 38, 829
BlsI GCNGC 2 cut(s) 39, 830
Bme1390I CCNGG 4 cut(s) 136, 239, 367, 1280
Bme18I GGWCC 8 cut(s) 125, 411, 479, 524, 878, 947, 1028, 1307
BmgBI CACGTC 2 cut(s) 244, 304
BmrFI CCNGG 4 cut(s) 136, 239, 367, 1280
BmsI GCATC 2 cut(s) 160, 711
BoxI GACNNNNGTC 1 cut(s) 246
BpiI GAAGAC 2 cut(s) 1278, 1281
Bpu10I CCTNAGC 1 cut(s) 1220
BpuEI CTTGAG 3 cut(s) 667, 758, 857
BpuMI CCSGG 3 cut(s) 136, 239, 367
Bsa29I ATCGAT 2 cut(s) 809, 1043
BsaAI YACGTR 1 cut(s) 520
BsaBI GATNNNNATC 1 cut(s) 1001
BsaI GGTCTC 2 cut(s) 613, 1318
BsaJI CCNNGG 3 cut(s) 210, 903, 1328
BsaWI WCCGGW 4 cut(s) 408, 604, 626, 665
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bsc4I CCNNNNNNNGG 6 cut(s) 134, 393, 562, 633, 968, 1299
Bse118I RCCGGY 4 cut(s) 626, 665, 731, 795
Bse1I ACTGG 2 cut(s) 808, 1293
Bse3DI GCAATG 1 cut(s) 223
Bse8I GATNNNNATC 1 cut(s) 1001
BseAI TCCGGA 1 cut(s) 408
BseBI CCWGG 1 cut(s) 1280
BseCI ATCGAT 2 cut(s) 809, 1043
BseDI CCNNGG 3 cut(s) 210, 903, 1328
BseGI GGATG 3 cut(s) 234, 702, 1212
BseJI GATNNNNATC 1 cut(s) 1001
BseLI CCNNNNNNNGG 6 cut(s) 134, 393, 562, 633, 968, 1299
BseMI GCAATG 1 cut(s) 223
BseNI ACTGG 2 cut(s) 808, 1293
BseSI GKGCMC 1 cut(s) 519
BseXI GCAGC 1 cut(s) 24
BseYI CCCAGC 2 cut(s) 447, 541
BshFI GGCC 7 cut(s) 68, 106, 227, 255, 471, 831, 1333
BshTI ACCGGT 2 cut(s) 626, 665
BshVI ATCGAT 2 cut(s) 809, 1043
BsiSI CCGG 9 cut(s) 135, 239, 367, 409, 605, 627, 666, 732, 796
BslFI GGGAC 3 cut(s) 465, 510, 960
BslI CCNNNNNNNGG 6 cut(s) 134, 393, 562, 633, 968, 1299
BsmAI GTCTC 5 cut(s) 313, 501, 613, 915, 1318
BsmBI CGTCTC 1 cut(s) 313
BsmFI GGGAC 3 cut(s) 465, 510, 960
BsnI GGCC 7 cut(s) 68, 106, 227, 255, 471, 831, 1333
Bso31I GGTCTC 2 cut(s) 613, 1318
Bsp1286I GDGCHC 2 cut(s) 163, 519
Bsp13I TCCGGA 1 cut(s) 408
Bsp143I GATC 2 cut(s) 806, 1002
BspACI CCGC 6 cut(s) 102, 128, 188, 342, 828, 1263
BspANI GGCC 7 cut(s) 68, 106, 227, 255, 471, 831, 1333
BspDI ATCGAT 2 cut(s) 809, 1043
BspEI TCCGGA 1 cut(s) 408
BspPI GGATC 1 cut(s) 814
BspTI CTTAAG 1 cut(s) 1127
BspTNI GGTCTC 2 cut(s) 613, 1318
BsrDI GCAATG 1 cut(s) 223
BsrFI RCCGGY 4 cut(s) 626, 665, 731, 795
BsrI ACTGG 2 cut(s) 808, 1293
BssAI RCCGGY 4 cut(s) 626, 665, 731, 795
BssECI CCNNGG 3 cut(s) 210, 903, 1328
BssMI GATC 2 cut(s) 806, 1002
BssT1I CCWWGG 1 cut(s) 903
Bst2UI CCWGG 1 cut(s) 1280
Bst4CI ACNGT 4 cut(s) 82, 428, 596, 620
Bst6I CTCTTC 2 cut(s) 774, 918
BstAFI CTTAAG 1 cut(s) 1127
BstBAI YACGTR 1 cut(s) 520
BstC8I GCNNGC 5 cut(s) 104, 207, 278, 733, 760
BstDEI CTNAG 3 cut(s) 503, 632, 1220
BstDSI CCRYGG 1 cut(s) 210
BstF5I GGATG 3 cut(s) 234, 702, 1212
BstKTI GATC 2 cut(s) 809, 1005
BstMAI GTCTC 5 cut(s) 313, 501, 613, 915, 1318
BstMBI GATC 2 cut(s) 806, 1002
BstMWI GCNNNNNNNGC 1 cut(s) 867
BstNI CCWGG 1 cut(s) 1280
BstNSI RCATGY 1 cut(s) 280
BstPAI GACNNNNGTC 1 cut(s) 246
BstSCI CCNGG 4 cut(s) 134, 237, 365, 1278
BstSLI GKGCMC 1 cut(s) 519
BstV1I GCAGC 1 cut(s) 24
BstV2I GAAGAC 2 cut(s) 1278, 1281
BstXI CCANNNNNNTGG 1 cut(s) 1097
Bsu15I ATCGAT 2 cut(s) 809, 1043
BsuRI GGCC 7 cut(s) 68, 106, 227, 255, 471, 831, 1333
BsuTUI ATCGAT 2 cut(s) 809, 1043
BtgI CCRYGG 1 cut(s) 210
BtrI CACGTC 2 cut(s) 244, 304
BtsCI GGATG 3 cut(s) 234, 702, 1212
BtsIMutI CAGTG 2 cut(s) 228, 801
Cac8I GCNNGC 5 cut(s) 104, 207, 278, 733, 760
Cfr10I RCCGGY 4 cut(s) 626, 665, 731, 795
ClaI ATCGAT 2 cut(s) 809, 1043
CpoI CGGWCCG 1 cut(s) 125
CspAI ACCGGT 2 cut(s) 626, 665
CspI CGGWCCG 1 cut(s) 125
DdeI CTNAG 3 cut(s) 503, 632, 1220
DpnI GATC 2 cut(s) 808, 1004
DpnII GATC 2 cut(s) 806, 1002
DraI TTTAAA 1 cut(s) 561
EaeI YGGCCR 3 cut(s) 66, 253, 469
Eam1104I CTCTTC 2 cut(s) 774, 918
EarI CTCTTC 2 cut(s) 774, 918
Eco130I CCWWGG 1 cut(s) 903
Eco24I GRGCYC 1 cut(s) 163
Eco31I GGTCTC 2 cut(s) 613, 1318
Eco47I GGWCC 8 cut(s) 125, 411, 479, 524, 878, 947, 1028, 1307
Eco72I CACGTG 1 cut(s) 520
EcoO109I RGGNCCY 3 cut(s) 479, 524, 878
EcoRII CCWGG 1 cut(s) 1278
EcoT14I CCWWGG 1 cut(s) 903
EcoT38I GRGCYC 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 903
Esp3I CGTCTC 1 cut(s) 313
FaqI GGGAC 3 cut(s) 465, 510, 960
FauI CCCGC 1 cut(s) 95
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 2 cut(s) 38, 829
FokI GGATG 3 cut(s) 221, 689, 1219
FriOI GRGCYC 1 cut(s) 163
Fsp4HI GCNGC 2 cut(s) 38, 829
FspBI CTAG 4 cut(s) 393, 497, 728, 1166
GluI GCNGC 2 cut(s) 38, 829
GsaI CCCAGC 2 cut(s) 451, 545
HaeIII GGCC 7 cut(s) 68, 106, 227, 255, 471, 831, 1333
HapII CCGG 9 cut(s) 135, 239, 367, 409, 605, 627, 666, 732, 796
HindIII AAGCTT 1 cut(s) 1217
HinfI GANTC 6 cut(s) 95, 750, 818, 997, 1018, 1283
HpaII CCGG 9 cut(s) 135, 239, 367, 409, 605, 627, 666, 732, 796
HphI GGTGA 4 cut(s) 9, 544, 616, 1151
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 5 cut(s) 94, 334, 755, 924, 1002
Hpy188III TCNNGA 7 cut(s) 349, 409, 569, 747, 775, 1079, 1121
Hpy8I GTNNAC 1 cut(s) 193
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 7 cut(s) 355, 962, 971, 979, 1047, 1073, 1206
HpyCH4III ACNGT 4 cut(s) 82, 428, 596, 620
HpyCH4IV ACGT 3 cut(s) 243, 303, 519
HpyCH4V TGCA 2 cut(s) 276, 490
HpyF10VI GCNNNNNNNGC 1 cut(s) 867
HpyF3I CTNAG 3 cut(s) 503, 632, 1220
HpySE526I ACGT 3 cut(s) 243, 303, 519
KflI GGGWCCC 2 cut(s) 479, 524
Kpn2I TCCGGA 1 cut(s) 408
KroI GCCGGC 1 cut(s) 731
KroNI GCCGGC 1 cut(s) 733
Kzo9I GATC 2 cut(s) 806, 1002
LmnI GCTCC 3 cut(s) 323, 402, 755
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 2 cut(s) 160, 711
MaeI CTAG 4 cut(s) 393, 497, 728, 1166
MaeII ACGT 3 cut(s) 243, 303, 519
MaeIII GTNAC 4 cut(s) 3, 369, 437, 1049
MalI GATC 2 cut(s) 808, 1004
MboI GATC 2 cut(s) 806, 1002
MboII GAAGA 5 cut(s) 716, 761, 905, 1281, 1283
MfeI CAATTG 1 cut(s) 473
MhlI GDGCHC 2 cut(s) 163, 519
MlsI TGGCCA 1 cut(s) 68
MluCI AATT 7 cut(s) 84, 473, 600, 679, 957, 1176, 1234
MluNI TGGCCA 1 cut(s) 68
MlyI GAGTC 1 cut(s) 812
Mox20I TGGCCA 1 cut(s) 68
MroI TCCGGA 1 cut(s) 408
MroNI GCCGGC 1 cut(s) 731
MscI TGGCCA 1 cut(s) 68
MseI TTAA 5 cut(s) 560, 614, 992, 1128, 1151
MslI CAYNNNNRTG 3 cut(s) 848, 1080, 1095
Msp20I TGGCCA 1 cut(s) 68
MspCI CTTAAG 1 cut(s) 1127
MspI CCGG 9 cut(s) 135, 239, 367, 409, 605, 627, 666, 732, 796
MspR9I CCNGG 4 cut(s) 136, 239, 367, 1280
MunI CAATTG 1 cut(s) 473
MvaI CCWGG 1 cut(s) 1280
MwoI GCNNNNNNNGC 1 cut(s) 867
NaeI GCCGGC 1 cut(s) 733
NciI CCSGG 3 cut(s) 136, 239, 367
NdeII GATC 2 cut(s) 806, 1002
NgoMIV GCCGGC 1 cut(s) 731
NmeAIII GCCGAG 1 cut(s) 447
NmuCI GTSAC 3 cut(s) 3, 369, 1049
NspI RCATGY 1 cut(s) 280
PaeI GCATGC 1 cut(s) 280
PdiI GCCGGC 1 cut(s) 733
PfeI GAWTC 5 cut(s) 95, 750, 997, 1018, 1283
PflFI GACNNNGTC 1 cut(s) 367
PfoI TCCNGGA 1 cut(s) 237
PinAI ACCGGT 2 cut(s) 626, 665
PkrI GCNGC 2 cut(s) 39, 830
PleI GAGTC 1 cut(s) 812
PmaCI CACGTG 1 cut(s) 520
PmlI CACGTG 1 cut(s) 520
PpsI GAGTC 1 cut(s) 812
Ppu21I YACGTR 1 cut(s) 520
PpuMI RGGWCCY 3 cut(s) 479, 524, 878
PshAI GACNNNNGTC 1 cut(s) 246
Psp5II RGGWCCY 3 cut(s) 479, 524, 878
Psp6I CCWGG 1 cut(s) 1278
PspCI CACGTG 1 cut(s) 520
PspFI CCCAGC 2 cut(s) 447, 541
PspGI CCWGG 1 cut(s) 1278
PspPPI RGGWCCY 3 cut(s) 479, 524, 878
PsyI GACNNNGTC 1 cut(s) 367
RseI CAYNNNNRTG 3 cut(s) 848, 1080, 1095
Rsr2I CGGWCCG 1 cut(s) 125
RsrII CGGWCCG 1 cut(s) 125
SaqAI TTAA 5 cut(s) 560, 614, 992, 1128, 1151
SatI GCNGC 2 cut(s) 38, 829
Sau3AI GATC 2 cut(s) 806, 1002
SchI GAGTC 1 cut(s) 812
ScrFI CCNGG 4 cut(s) 136, 239, 367, 1280
SduI GDGCHC 2 cut(s) 163, 519
SfaNI GCATC 2 cut(s) 160, 711
SinI GGWCC 8 cut(s) 125, 411, 479, 524, 878, 947, 1028, 1307
SmiMI CAYNNNNRTG 3 cut(s) 848, 1080, 1095
SmlI CTYRAG 4 cut(s) 646, 773, 872, 1127
SmoI CTYRAG 4 cut(s) 646, 773, 872, 1127
SpeI ACTAGT 2 cut(s) 496, 1165
SphI GCATGC 1 cut(s) 280
Sse9I AATT 7 cut(s) 84, 473, 600, 679, 957, 1176, 1234
SsiI CCGC 6 cut(s) 102, 128, 188, 342, 828, 1263
SspMI CTAG 4 cut(s) 393, 497, 728, 1166
StyD4I CCNGG 4 cut(s) 134, 237, 365, 1278
StyI CCWWGG 1 cut(s) 903
TaaI ACNGT 4 cut(s) 82, 428, 596, 620
TaiI ACGT 3 cut(s) 246, 306, 522
TaqI TCGA 6 cut(s) 163, 570, 809, 1043, 1066, 1120
TaqII GACCGA 1 cut(s) 964
TasI AATT 7 cut(s) 84, 473, 600, 679, 957, 1176, 1234
TauI GCSGC 1 cut(s) 831
TfiI GAWTC 5 cut(s) 95, 750, 997, 1018, 1283
Tru1I TTAA 5 cut(s) 560, 614, 992, 1128, 1151
Tru9I TTAA 5 cut(s) 560, 614, 992, 1128, 1151
TscAI CASTG 2 cut(s) 235, 808
TseFI GTSAC 3 cut(s) 3, 369, 1049
TseI GCWGC 1 cut(s) 37
Tsp45I GTSAC 3 cut(s) 3, 369, 1049
TspDTI ATGAA 5 cut(s) 234, 998, 1029, 1031, 1064
TspGWI ACGGA 1 cut(s) 138
TspRI CASTG 2 cut(s) 235, 808
Tth111I GACNNNGTC 1 cut(s) 367
Vha464I CTTAAG 1 cut(s) 1127
VpaK11BI GGWCC 8 cut(s) 125, 411, 479, 524, 878, 947, 1028, 1307
XapI RAATTY 2 cut(s) 679, 957
XceI RCATGY 1 cut(s) 280
XmiI GTMKAC 1 cut(s) 192
XspI CTAG 4 cut(s) 393, 497, 728, 1166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.