Rw2G034980

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0018461
Physical Location & Seq
Reverse (-)
57627048 .. 57628898
1851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G034980.1

Sequence Viewer

Length: 828 bp
ATGGATAACAAGAAGTCCTCTTCAAGTGCTTTGATAGCATTACCTTCGCCAATTAAAGAAGATGAAATTGAATGGAAGATGAGCTTACCATCTGGAGTGAAGTTTCGGCCCTCACATAAAGATTTATATCATTATCTCCATATGAAGGTTCATACTGGGCGCATTGATTTTGGTGGAGTTATTAGAAGCATCAATCTTTATATATATAAGCCCGAGGACCTAAGAGGTTTAGCATTTGATAATGATGATGGCCGCTTGTACTTCTTCACACCATTGCAAAAGAAGTTCACAAAGGGAAAAAAGACAAACAGAGTAACCGGACATGGTTTTTGGAAGACTCCTAGTAACCCAAATAAGAGACAGAAGTGTTCTACTTCTTATGATGAGCCTTTGTGTATCACCTGCCCTGGTAATGACATTGCCTCTTATGCCCAATTTCCTAAACGTAGATCACCTAGTGCTAATGACACCCCCAACATTGATCAAAACCAAGCTAGTGACCCTTCTTTTGATCAAATGGTTTCTAACGTACTCAACCAGGATCCTGATGAATACACGTGTCTAGAGCCATTACTCAACCTAGATATAGGCGATTACGAGTGGAAAGACGATATTTTTAATGATCTTTTTCCATCTGAACTTAATCCTCAAAATAGTAACCCTAATAGCATGAACCCTACAACAACTACTACTAGTCATCCTACTGTCTCTGCTTCAGATCCACCTCCTCCCACCTTCAACTCTTCTGCCGATGAAAATGCCAGGATAGCATCTATGGCAAAAGTGGGTCAATCCAATGCCACAACAAGCTTATCGATCGATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

275

Amino Acids

30.77

Weight (kDa)

5.69

Isoelectric Point (pI)

51.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 30 - 119 1e-14 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018461)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g33050
rosa_laevigata RLG00000019978
rosa_multiflora Rmu_sc0004112.1_g000016
rosa_roxburghii Rroxscaffold_2G00102400
rosa_rugosa Rorug02G0374700
rosa_samantha Rh2AG427000 Rh2BG436300 Rh2CG413500 Rh2DG446200
rosa_wichuraiana Rw2G034980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 410
Acc36I ACCTGC 1 cut(s) 410
AciI CCGC 1 cut(s) 253
AclWI GGATC 3 cut(s) 536, 549, 713
AcoI YGGCCR 1 cut(s) 250
AcuI CTGAAG 1 cut(s) 699
AcvI CACGTG 1 cut(s) 558
AdeI CACNNNGTG 1 cut(s) 458
AfaI GTAC 2 cut(s) 260, 531
AfiI CCNNNNNNNGG 1 cut(s) 145
AflIII ACRYGT 2 cut(s) 555, 557
AgsI TTSAA 3 cut(s) 24, 71, 739
AhlI ACTAGT 1 cut(s) 692
AjnI CCWGG 3 cut(s) 406, 537, 761
AluBI AGCT 3 cut(s) 84, 494, 810
AluI AGCT 3 cut(s) 84, 494, 810
Alw26I GTCTC 2 cut(s) 352, 712
AlwI GGATC 3 cut(s) 536, 549, 713
Ama87I CYCGRG 1 cut(s) 212
AoxI GGCC 2 cut(s) 107, 250
ArsI GACNNNNNNTTYG 4 cut(s) 312, 344, 491, 523
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 2 cut(s) 108, 217
AsuHPI GGTGA 2 cut(s) 391, 444
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 1 cut(s) 217
BamHI GGATCC 1 cut(s) 541
BbrPI CACGTG 1 cut(s) 558
BbsI GAAGAC 1 cut(s) 341
BccI CCATC 3 cut(s) 97, 242, 640
BcgI CGANNNNNNTGC 4 cut(s) 27, 61, 740, 774
BciT130I CCWGG 3 cut(s) 408, 539, 763
BclI TGATCA 2 cut(s) 481, 511
BcoDI GTCTC 2 cut(s) 352, 712
BcuI ACTAGT 1 cut(s) 692
BfaI CTAG 6 cut(s) 342, 456, 495, 563, 581, 693
BfuAI ACCTGC 1 cut(s) 410
BisI GCNGC 1 cut(s) 253
BlsI GCNGC 1 cut(s) 254
Bme1390I CCNGG 3 cut(s) 408, 539, 763
Bme18I GGWCC 1 cut(s) 217
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 2 cut(s) 108, 217
BmiI GGNNCC 1 cut(s) 543
BmrFI CCNGG 3 cut(s) 408, 539, 763
BmrI ACTGGG 1 cut(s) 165
BmsI GCATC 2 cut(s) 198, 779
BmuI ACTGGG 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 341
BpmI CTGGAG 1 cut(s) 114
Bsa29I ATCGAT 2 cut(s) 815, 819
BsaAI YACGTR 1 cut(s) 558
BsaBI GATNNNNATC 1 cut(s) 126
BsaJI CCNNGG 2 cut(s) 213, 406
BsaWI WCCGGW 1 cut(s) 317
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse1I ACTGG 1 cut(s) 160
Bse3DI GCAATG 2 cut(s) 272, 417
Bse8I GATNNNNATC 1 cut(s) 126
BseBI CCWGG 3 cut(s) 408, 539, 763
BseCI ATCGAT 2 cut(s) 815, 819
BseDI CCNNGG 2 cut(s) 213, 406
BseGI GGATG 1 cut(s) 697
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMI GCAATG 2 cut(s) 272, 417
BseNI ACTGG 1 cut(s) 160
BseRI GAGGAG 1 cut(s) 717
Bsh1285I CGRYCG 1 cut(s) 819
BshFI GGCC 2 cut(s) 109, 252
BshVI ATCGAT 2 cut(s) 815, 819
BsiEI CGRYCG 1 cut(s) 819
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 1 cut(s) 318
BslI CCNNNNNNNGG 1 cut(s) 145
BsmAI GTCTC 2 cut(s) 352, 712
BsnI GGCC 2 cut(s) 109, 252
BsoBI CYCGRG 1 cut(s) 212
Bsp143I GATC 8 cut(s) 449, 481, 511, 541, 622, 718, 816, 820
BspACI CCGC 1 cut(s) 253
BspANI GGCC 2 cut(s) 109, 252
BspDI ATCGAT 2 cut(s) 815, 819
BspLI GGNNCC 1 cut(s) 543
BspMI ACCTGC 1 cut(s) 410
BspPI GGATC 3 cut(s) 536, 549, 713
BsrDI GCAATG 2 cut(s) 272, 417
BsrI ACTGG 1 cut(s) 160
BssECI CCNNGG 2 cut(s) 213, 406
BssMI GATC 8 cut(s) 449, 481, 511, 541, 622, 718, 816, 820
Bst2UI CCWGG 3 cut(s) 408, 539, 763
Bst4CI ACNGT 1 cut(s) 706
Bst6I CTCTTC 2 cut(s) 25, 748
BstBAI YACGTR 1 cut(s) 558
BstDEI CTNAG 1 cut(s) 221
BstF5I GGATG 1 cut(s) 697
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 8 cut(s) 452, 484, 514, 544, 625, 721, 819, 823
BstMAI GTCTC 2 cut(s) 352, 712
BstMBI GATC 8 cut(s) 449, 481, 511, 541, 622, 718, 816, 820
BstMCI CGRYCG 1 cut(s) 819
BstMWI GCNNNNNNNGC 4 cut(s) 35, 428, 767, 776
BstNI CCWGG 3 cut(s) 408, 539, 763
BstSCI CCNGG 3 cut(s) 406, 537, 761
BstV2I GAAGAC 1 cut(s) 341
BstX2I RGATCY 2 cut(s) 541, 718
BstYI RGATCY 2 cut(s) 541, 718
Bsu15I ATCGAT 2 cut(s) 815, 819
BsuRI GGCC 2 cut(s) 109, 252
BsuTUI ATCGAT 2 cut(s) 815, 819
BtsCI GGATG 1 cut(s) 697
BveI ACCTGC 1 cut(s) 410
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 2 cut(s) 108, 217
ClaI ATCGAT 2 cut(s) 815, 819
Csp6I GTAC 2 cut(s) 259, 530
CviAII CATG 2 cut(s) 323, 670
CviJI RGCY 8 cut(s) 84, 109, 211, 252, 388, 494, 568, 810
CviKI_1 RGCY 8 cut(s) 84, 109, 211, 252, 388, 494, 568, 810
CviQI GTAC 2 cut(s) 259, 530
DdeI CTNAG 1 cut(s) 221
DpnI GATC 8 cut(s) 451, 483, 513, 543, 624, 720, 818, 822
DpnII GATC 8 cut(s) 449, 481, 511, 541, 622, 718, 816, 820
DraIII CACNNNGTG 1 cut(s) 458
EaeI YGGCCR 1 cut(s) 250
Eam1104I CTCTTC 2 cut(s) 25, 748
EarI CTCTTC 2 cut(s) 25, 748
Eco47I GGWCC 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 699
Eco72I CACGTG 1 cut(s) 558
Eco88I CYCGRG 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 217
EcoRII CCWGG 3 cut(s) 406, 537, 761
FaeI CATG 2 cut(s) 326, 673
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FatI CATG 2 cut(s) 322, 669
FauNDI CATATG 1 cut(s) 141
FbaI TGATCA 2 cut(s) 481, 511
Fnu4HI GCNGC 1 cut(s) 253
FokI GGATG 1 cut(s) 684
Fsp4HI GCNGC 1 cut(s) 253
FspBI CTAG 6 cut(s) 342, 456, 495, 563, 581, 693
GlaI GCGC 1 cut(s) 161
GluI GCNGC 1 cut(s) 253
GsuI CTGGAG 1 cut(s) 114
HaeIII GGCC 2 cut(s) 109, 252
HapII CCGG 1 cut(s) 318
HhaI GCGC 1 cut(s) 162
Hin1II CATG 2 cut(s) 326, 673
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HindIII AAGCTT 1 cut(s) 808
HinfI GANTC 1 cut(s) 337
HpaII CCGG 1 cut(s) 318
HphI GGTGA 2 cut(s) 391, 444
Hpy166II GTNNAC 1 cut(s) 288
Hpy188I TCNGA 2 cut(s) 637, 718
Hpy188III TCNNGA 3 cut(s) 93, 545, 563
Hpy8I GTNNAC 1 cut(s) 288
HpyAV CCTTC 4 cut(s) 54, 139, 513, 745
HpyCH4III ACNGT 1 cut(s) 706
HpyCH4IV ACGT 3 cut(s) 445, 528, 557
HpyCH4V TGCA 1 cut(s) 277
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 428, 767, 776
HpyF3I CTNAG 1 cut(s) 221
HpySE526I ACGT 3 cut(s) 445, 528, 557
Hsp92II CATG 2 cut(s) 326, 673
HspAI GCGC 1 cut(s) 160
Ksp22I TGATCA 2 cut(s) 481, 511
Kzo9I GATC 8 cut(s) 449, 481, 511, 541, 622, 718, 816, 820
LweI GCATC 2 cut(s) 198, 779
MaeI CTAG 6 cut(s) 342, 456, 495, 563, 581, 693
MaeII ACGT 3 cut(s) 445, 528, 557
MaeIII GTNAC 4 cut(s) 313, 344, 497, 656
MalI GATC 8 cut(s) 451, 483, 513, 543, 624, 720, 818, 822
MboI GATC 8 cut(s) 449, 481, 511, 541, 622, 718, 816, 820
MboII GAAGA 6 cut(s) 12, 71, 88, 256, 346, 735
MflI RGATCY 2 cut(s) 541, 718
MluCI AATT 3 cut(s) 51, 66, 434
MlyI GAGTC 1 cut(s) 331
MnlI CCTC 8 cut(s) 28, 121, 208, 218, 433, 657, 735, 738
MseI TTAA 3 cut(s) 54, 618, 642
MspI CCGG 1 cut(s) 318
MspR9I CCNGG 3 cut(s) 408, 539, 763
MvaI CCWGG 3 cut(s) 408, 539, 763
MwoI GCNNNNNNNGC 4 cut(s) 35, 428, 767, 776
NdeI CATATG 1 cut(s) 141
NdeII GATC 8 cut(s) 449, 481, 511, 541, 622, 718, 816, 820
NlaIII CATG 2 cut(s) 326, 673
NlaIV GGNNCC 1 cut(s) 543
NmuCI GTSAC 1 cut(s) 497
PaqCI CACCTGC 1 cut(s) 410
PkrI GCNGC 1 cut(s) 254
Ple19I CGATCG 1 cut(s) 819
PleI GAGTC 1 cut(s) 331
PmaCI CACGTG 1 cut(s) 558
PmlI CACGTG 1 cut(s) 558
PpsI GAGTC 1 cut(s) 331
Ppu21I YACGTR 1 cut(s) 558
PpuMI RGGWCCY 1 cut(s) 217
Psp5II RGGWCCY 1 cut(s) 217
Psp6I CCWGG 3 cut(s) 406, 537, 761
PspCI CACGTG 1 cut(s) 558
PspGI CCWGG 3 cut(s) 406, 537, 761
PspN4I GGNNCC 1 cut(s) 543
PspPI GGNCC 2 cut(s) 108, 217
PspPPI RGGWCCY 1 cut(s) 217
PsuI RGATCY 2 cut(s) 541, 718
PvuI CGATCG 1 cut(s) 819
RsaI GTAC 2 cut(s) 260, 531
RsaNI GTAC 2 cut(s) 259, 530
SaqAI TTAA 3 cut(s) 54, 618, 642
SatI GCNGC 1 cut(s) 253
Sau3AI GATC 8 cut(s) 449, 481, 511, 541, 622, 718, 816, 820
Sau96I GGNCC 2 cut(s) 108, 217
SchI GAGTC 1 cut(s) 331
ScrFI CCNGG 3 cut(s) 408, 539, 763
SfaNI GCATC 2 cut(s) 198, 779
SinI GGWCC 1 cut(s) 217
SpeI ACTAGT 1 cut(s) 692
Sse9I AATT 3 cut(s) 51, 66, 434
SsiI CCGC 1 cut(s) 253
SspMI CTAG 6 cut(s) 342, 456, 495, 563, 581, 693
StyD4I CCNGG 3 cut(s) 406, 537, 761
TaaI ACNGT 1 cut(s) 706
TaiI ACGT 3 cut(s) 448, 531, 560
TaqI TCGA 2 cut(s) 815, 819
TasI AATT 3 cut(s) 51, 66, 434
TatI WGTACW 1 cut(s) 258
TauI GCSGC 1 cut(s) 255
Tru1I TTAA 3 cut(s) 54, 618, 642
Tru9I TTAA 3 cut(s) 54, 618, 642
TseFI GTSAC 1 cut(s) 497
Tsp45I GTSAC 1 cut(s) 497
TspDTI ATGAA 6 cut(s) 78, 140, 158, 564, 686, 768
VpaK11BI GGWCC 1 cut(s) 217
XbaI TCTAGA 1 cut(s) 562
XspI CTAG 6 cut(s) 342, 456, 495, 563, 581, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.