Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0017340

Physical Location & Seq

Genomic Coordinates Reverse (-)

26875940 .. 26877714

Gene Structure 1775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g33950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCAGTCAAGAATGCAGTACAATGTGGTAATGTGGAAGATGCAATCGATAAGGTGAATGACTTAAACTTGGAGAATGCTCTAGATAGAAATCTTCTTAACTACACGTTATCAATGTTGTGGTCTTTGATTGCGGGGAGATTGCCGGGTCGAACAGACAATGTAATCAAGAACTACTGGTACACTTGTTTAAGCAAGAAAATCCAGCAGAAAGAGAAGCAAAGTAACAATGAAGCTAATGGGACGATACAATTTCCGGTAGTAGATGAGAAACTAAGTGTAGCAGATGATGATCAGAAGGTCCATGTGGAAATGAAGCAAGAGTGCTTGGCAGCAGCAGCAGGTACAAGTGCGGCTCTAATCAAGAAAGAGGAGGTGATCGATTATGAGGACTACTCCAACACCTACATTAACAATATTGATGCTGACGAGTTCCTTAATCTGCTCAATGAAGAAGAACCTTTGAGTTGGGAGGTTCCGCAAATTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009889 GO:0009987 GO:0010023 GO:0010468 GO:0010556 GO:0016053 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046189 GO:0046394 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

164

Amino Acids

18.4

Weight (kDa)

4.4

Isoelectric Point (pI)

31.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	41 - 64	4.9e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017340)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g33950 FvH4_6g38680
rosa_chinensis	RchiOBHm_Chr2g0152151
rosa_laevigata	RLG00000020613
rosa_multiflora	Rmu_sc0003043.1_g000017
rosa_roxburghii	Rroxscaffold_2G00095880
rosa_rugosa	Rorug02G0431300
rosa_samantha	Rh2AG492500 Rh2BG504900 Rh2CG478900 Rh2DG516300
rosa_wichuraiana	Rw0G012960 Rw2G040460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	332
AciI	CCGC	3 cut(s)	134, 353, 479
AcsI	RAATTY	1 cut(s)	483
AfaI	GTAC	3 cut(s)	21, 182, 346
AflIII	ACRYGT	1 cut(s)	105
AluBI	AGCT	1 cut(s)	236
AluI	AGCT	1 cut(s)	236
ApeKI	GCWGC	3 cut(s)	332, 335, 338
ApoI	RAATTY	1 cut(s)	483
AspS9I	GGNCC	1 cut(s)	301
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	2 cut(s)	67, 388
AvaII	GGWCC	1 cut(s)	301
BaeI	ACNNNNGTAYC	2 cut(s)	172, 205
BbvI	GCAGC	3 cut(s)	344, 347, 350
BclI	TGATCA	1 cut(s)	292
BcnI	CCSGG	1 cut(s)	147
BfaI	CTAG	1 cut(s)	83
BfuAI	ACCTGC	1 cut(s)	332
BisI	GCNGC	4 cut(s)	333, 336, 339, 354
BlsI	GCNGC	4 cut(s)	334, 337, 340, 355
Bme1390I	CCNGG	1 cut(s)	147
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	2 cut(s)	31, 412
BplI	GAGNNNNNCTC	2 cut(s)	380, 412
BpuMI	CCSGG	1 cut(s)	147
Bsa29I	ATCGAT	2 cut(s)	48, 381
BsaBI	GATNNNNATC	2 cut(s)	90, 291
BsaWI	WCCGGW	1 cut(s)	256
Bse1I	ACTGG	1 cut(s)	182
Bse8I	GATNNNNATC	2 cut(s)	90, 291
BseCI	ATCGAT	2 cut(s)	48, 381
BseJI	GATNNNNATC	2 cut(s)	90, 291
BseNI	ACTGG	1 cut(s)	182
BseRI	GAGGAG	1 cut(s)	386
BseXI	GCAGC	3 cut(s)	344, 347, 350
BshVI	ATCGAT	2 cut(s)	48, 381
BsiSI	CCGG	2 cut(s)	146, 257
BslFI	GGGAC	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	256
BsmI	GAATGC	2 cut(s)	19, 82
Bsp143I	GATC	2 cut(s)	292, 378
BspACI	CCGC	3 cut(s)	134, 353, 479
BspDI	ATCGAT	2 cut(s)	48, 381
BspLI	GGNNCC	1 cut(s)	477
BspMI	ACCTGC	1 cut(s)	332
BsrI	ACTGG	1 cut(s)	182
BssMI	GATC	2 cut(s)	292, 378
BstDEI	CTNAG	1 cut(s)	275
BstKTI	GATC	2 cut(s)	295, 381
BstMBI	GATC	2 cut(s)	292, 378
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	145
BstV1I	GCAGC	3 cut(s)	344, 347, 350
Bsu15I	ATCGAT	2 cut(s)	48, 381
BsuTUI	ATCGAT	2 cut(s)	48, 381
BveI	ACCTGC	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	301
ClaI	ATCGAT	2 cut(s)	48, 381
Csp6I	GTAC	3 cut(s)	20, 181, 345
CviAII	CATG	1 cut(s)	305
CviJI	RGCY	2 cut(s)	236, 356
CviKI_1	RGCY	2 cut(s)	236, 356
CviQI	GTAC	3 cut(s)	20, 181, 345
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	2 cut(s)	294, 380
DpnII	GATC	2 cut(s)	292, 378
Eco47I	GGWCC	1 cut(s)	301
FaeI	CATG	1 cut(s)	308
FaiI	YATR	2 cut(s)	306, 387
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	1 cut(s)	304
FauI	CCCGC	1 cut(s)	127
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	4 cut(s)	333, 336, 339, 354
Fsp4HI	GCNGC	4 cut(s)	333, 336, 339, 354
FspBI	CTAG	1 cut(s)	83
GluI	GCNGC	4 cut(s)	333, 336, 339, 354
HapII	CCGG	2 cut(s)	146, 257
Hin1II	CATG	1 cut(s)	308
HpaII	CCGG	2 cut(s)	146, 257
HphI	GGTGA	2 cut(s)	67, 388
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	1 cut(s)	297
Hpy188III	TCNNGA	5 cut(s)	10, 83, 169, 364, 489
Hpy8I	GTNNAC	1 cut(s)	183
HpyAV	CCTTC	1 cut(s)	292
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	2 cut(s)	17, 44
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	1 cut(s)	275
HpySE526I	ACGT	1 cut(s)	107
Hsp92II	CATG	1 cut(s)	308
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	2 cut(s)	292, 378
LpnPI	CCDG	5 cut(s)	159, 163, 218, 270, 327
Lsp1109I	GCAGC	3 cut(s)	344, 347, 350
LweI	GCATC	2 cut(s)	31, 412
MaeI	CTAG	1 cut(s)	83
MaeII	ACGT	1 cut(s)	107
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	2 cut(s)	294, 380
MboI	GATC	2 cut(s)	292, 378
MboII	GAAGA	4 cut(s)	50, 86, 464, 467
MluCI	AATT	2 cut(s)	251, 483
MmeI	TCCRAC	1 cut(s)	423
MnlI	CCTC	4 cut(s)	364, 367, 382, 466
MseI	TTAA	5 cut(s)	65, 99, 191, 411, 438
MspI	CCGG	2 cut(s)	146, 257
MspR9I	CCNGG	1 cut(s)	147
Mva1269I	GAATGC	2 cut(s)	19, 82
MwoI	GCNNNNNNNGC	1 cut(s)	338
NciI	CCSGG	1 cut(s)	147
NdeII	GATC	2 cut(s)	292, 378
NlaIII	CATG	1 cut(s)	308
NlaIV	GGNNCC	1 cut(s)	477
PctI	GAATGC	2 cut(s)	19, 82
PkrI	GCNGC	4 cut(s)	334, 337, 340, 355
PspN4I	GGNNCC	1 cut(s)	477
PspPI	GGNCC	1 cut(s)	301
PsrI	GAACNNNNNNTAC	2 cut(s)	164, 196
RsaI	GTAC	3 cut(s)	21, 182, 346
RsaNI	GTAC	3 cut(s)	20, 181, 345
SaqAI	TTAA	5 cut(s)	65, 99, 191, 411, 438
SatI	GCNGC	4 cut(s)	333, 336, 339, 354
Sau3AI	GATC	2 cut(s)	292, 378
Sau96I	GGNCC	1 cut(s)	301
ScrFI	CCNGG	1 cut(s)	147
SetI	ASST	9 cut(s)	57, 110, 238, 303, 346, 378, 407, 463, 477
SfaNI	GCATC	2 cut(s)	31, 412
SinI	GGWCC	1 cut(s)	301
Sse9I	AATT	2 cut(s)	251, 483
SsiI	CCGC	3 cut(s)	134, 353, 479
SspI	AATATT	1 cut(s)	418
SspMI	CTAG	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	145
TaiI	ACGT	1 cut(s)	110
TaqI	TCGA	3 cut(s)	48, 151, 381
TasI	AATT	2 cut(s)	251, 483
TatI	WGTACW	1 cut(s)	19
TauI	GCSGC	1 cut(s)	356
Tru1I	TTAA	5 cut(s)	65, 99, 191, 411, 438
Tru9I	TTAA	5 cut(s)	65, 99, 191, 411, 438
TseI	GCWGC	3 cut(s)	332, 335, 338
TspDTI	ATGAA	3 cut(s)	246, 329, 465
VpaK11BI	GGWCC	1 cut(s)	301
XapI	RAATTY	1 cut(s)	483
XbaI	TCTAGA	1 cut(s)	82
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.