Rh2AG492500
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0017340
Physical Location & Seq
Forward (+)
71418053 .. 71419562
1510 bp
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UTR
Exon/CDS
Intron
Rh2AG492500.1

Sequence Viewer

Length: 399 bp
ATGTATGTGCAAAATTTCTTGTTTCTAAGGTGGTCTTTGATTGCGGGAAGATTACCGGGTCGAACAGACAATGAGATAAAGAACTACTGGAATACCCATTTGAGCAAGAAAATTAACCAGAAAGAGAAGCAAAGTAGCAATGGAGCAAATTCGACAATACAAATTCCCACAGTTGACGAGAAACCAAGTGTAGCAGATGATGATCGGAAGGTCCATGTAGAAATGAAGCAAGAGTGCTTATCATCAGGAGTGGGTACAAGTGCGGCTCTAATAAAGAAAGAGGTGATGATCGATCCTGAGGATTACTCCAACACTAACATTAACAATATTGATGTTGATGACTTCTTTAATCTCCTCGATAAAGAACCTTTGAGTTGGGAGGTTCCGCAAATTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

132

Amino Acids

15.07

Weight (kDa)

4.99

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 10 - 34 2.2e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g33950 FvH4_6g38680
rosa_chinensis RchiOBHm_Chr2g0152151
rosa_laevigata RLG00000020613
rosa_multiflora Rmu_sc0003043.1_g000017
rosa_roxburghii Rroxscaffold_2G00095880
rosa_rugosa Rorug02G0431300
rosa_samantha Rh2AG492500 Rh2BG504900 Rh2CG478900 Rh2DG516300
rosa_wichuraiana Rw0G012960 Rw2G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 44, 263, 386
AclWI GGATC 1 cut(s) 287
AcsI RAATTY 4 cut(s) 13, 148, 162, 390
AfaI GTAC 1 cut(s) 256
AlwI GGATC 1 cut(s) 287
ApoI RAATTY 4 cut(s) 13, 148, 162, 390
AspS9I GGNCC 1 cut(s) 211
AsuC2I CCSGG 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 295
AvaII GGWCC 1 cut(s) 211
AxyI CCTNAGG 1 cut(s) 297
BcnI CCSGG 1 cut(s) 57
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
Bme1390I CCNGG 1 cut(s) 57
Bme18I GGWCC 1 cut(s) 211
BmgT120I GGNCC 1 cut(s) 211
BmiI GGNNCC 1 cut(s) 384
BmrFI CCNGG 1 cut(s) 57
BplI GAGNNNNNCTC 2 cut(s) 290, 322
BpuMI CCSGG 1 cut(s) 57
Bsa29I ATCGAT 1 cut(s) 291
BsaBI GATNNNNATC 1 cut(s) 201
Bse1I ACTGG 1 cut(s) 92
Bse21I CCTNAGG 1 cut(s) 297
Bse3DI GCAATG 1 cut(s) 145
Bse8I GATNNNNATC 1 cut(s) 201
BseCI ATCGAT 1 cut(s) 291
BseJI GATNNNNATC 1 cut(s) 201
BseMI GCAATG 1 cut(s) 145
BseMII CTCAG 1 cut(s) 288
BseNI ACTGG 1 cut(s) 92
BseRI GAGGAG 1 cut(s) 344
BshVI ATCGAT 1 cut(s) 291
BsiSI CCGG 1 cut(s) 56
Bsp143I GATC 3 cut(s) 202, 288, 292
BspACI CCGC 3 cut(s) 44, 263, 386
BspCNI CTCAG 1 cut(s) 289
BspDI ATCGAT 1 cut(s) 291
BspLI GGNNCC 1 cut(s) 384
BspPI GGATC 1 cut(s) 287
BsrDI GCAATG 1 cut(s) 145
BsrI ACTGG 1 cut(s) 92
BssMI GATC 3 cut(s) 202, 288, 292
Bst4CI ACNGT 1 cut(s) 172
BstDEI CTNAG 2 cut(s) 26, 297
BstKTI GATC 3 cut(s) 205, 291, 295
BstMBI GATC 3 cut(s) 202, 288, 292
BstSCI CCNGG 1 cut(s) 55
Bsu15I ATCGAT 1 cut(s) 291
Bsu36I CCTNAGG 1 cut(s) 297
BsuTUI ATCGAT 1 cut(s) 291
Cfr13I GGNCC 1 cut(s) 211
ClaI ATCGAT 1 cut(s) 291
Csp6I GTAC 1 cut(s) 255
CviAII CATG 1 cut(s) 215
CviJI RGCY 1 cut(s) 266
CviKI_1 RGCY 1 cut(s) 266
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 2 cut(s) 26, 297
DpnI GATC 3 cut(s) 204, 290, 294
DpnII GATC 3 cut(s) 202, 288, 292
Eco47I GGWCC 1 cut(s) 211
Eco81I CCTNAGG 1 cut(s) 297
FaeI CATG 1 cut(s) 218
FaiI YATR 2 cut(s) 6, 216
FalI AAGNNNNNCTT 2 cut(s) 19, 51
FatI CATG 1 cut(s) 214
FauI CCCGC 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 264
Fsp4HI GCNGC 1 cut(s) 264
GluI GCNGC 1 cut(s) 264
HapII CCGG 1 cut(s) 56
Hin1II CATG 1 cut(s) 218
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HpaII CCGG 1 cut(s) 56
HphI GGTGA 1 cut(s) 295
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 1 cut(s) 207
Hpy188III TCNNGA 2 cut(s) 246, 296
Hpy8I GTNNAC 1 cut(s) 175
HpyAV CCTTC 1 cut(s) 202
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4V TGCA 1 cut(s) 10
HpyF3I CTNAG 2 cut(s) 26, 297
Hsp92II CATG 1 cut(s) 218
Kzo9I GATC 3 cut(s) 202, 288, 292
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 5 cut(s) 69, 73, 131, 231, 309
MalI GATC 3 cut(s) 204, 290, 294
MboI GATC 3 cut(s) 202, 288, 292
MboII GAAGA 1 cut(s) 60
MluCI AATT 5 cut(s) 13, 111, 148, 162, 390
MmeI TCCRAC 1 cut(s) 333
MnlI CCTC 4 cut(s) 274, 292, 365, 373
MseI TTAA 3 cut(s) 114, 321, 348
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 57
NciI CCSGG 1 cut(s) 57
NdeII GATC 3 cut(s) 202, 288, 292
NlaIII CATG 1 cut(s) 218
NlaIV GGNNCC 1 cut(s) 384
PkrI GCNGC 1 cut(s) 265
PspN4I GGNNCC 1 cut(s) 384
PspPI GGNCC 1 cut(s) 211
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
SaqAI TTAA 3 cut(s) 114, 321, 348
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 3 cut(s) 202, 288, 292
Sau96I GGNCC 1 cut(s) 211
ScrFI CCNGG 1 cut(s) 57
SetI ASST 5 cut(s) 32, 213, 285, 370, 384
SinI GGWCC 1 cut(s) 211
Sse9I AATT 5 cut(s) 13, 111, 148, 162, 390
SsiI CCGC 3 cut(s) 44, 263, 386
SspI AATATT 1 cut(s) 328
StyD4I CCNGG 1 cut(s) 55
TaaI ACNGT 1 cut(s) 172
TaqI TCGA 4 cut(s) 61, 152, 291, 357
TasI AATT 5 cut(s) 13, 111, 148, 162, 390
TauI GCSGC 1 cut(s) 266
Tru1I TTAA 3 cut(s) 114, 321, 348
Tru9I TTAA 3 cut(s) 114, 321, 348
TspDTI ATGAA 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 211
XapI RAATTY 4 cut(s) 13, 148, 162, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.