FvH4_6g38680
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017340
Physical Location & Seq
Forward (+)
30606212 .. 30608025
1814 bp
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UTR
Exon/CDS
Intron
FvH4_6g38680.t1

Sequence Viewer

Length: 639 bp
ATGGCCTCACAGAACCAAAAGCCCACCCCAACAGCATTGGTCAAGGGGAAGTGGACTCCCGACGAAGATGAGAAACTAATCGAGGCTGTTGCCCTTCATGGTGCAAAGAACTGGACCTCAATTGCCTCCAAAGCAGGGCTGAATCGGAGCGGCAAGAGTTGCAGGCTGAGATGGGTGAACTATCTGAGACCCAACATCAAGAGAGGCGACATGTCTGAACAGGAAGAGGACTTGATTATTAGGCTGCACAAGCTTCTTGGAAATAGGTGGTCTTTGATTGCGGGAAGATTGCCGGGTCGAACAGACAATGAAATCAAGAATTACTGGTACACTCGTTTAAGCAAGAAAATCCAGCAGAAAGAGAAGCAAAGTAACAATGGAGCTAATTCGACGATACAATTTCCGGCAGTAGATGAGAAAACAAGTGTGGCAGATGATGATCAGAAGGTCCATGTAGAAATGAAGCAAGAGTGCGTGTCATCAGCAGTGCGTACAAGTGCGGCTCTAATCAAGAAAGAGGAGGTGATCGATCCTGAGGACCACTCCAGCACTTGCATTAACAATATTGATGCTGACGAGTTCCTTAATCTTCTCAATGAAGAAGAACCTTTGAGTTGGGAGGTTCCGCAAATTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

213

Amino Acids

24.01

Weight (kDa)

6.14

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 15 - 62 8e-21 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 18 - 76 1.6e-14 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 68 - 112 5.9e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 72 - 120 1.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g33950 FvH4_6g38680
rosa_chinensis RchiOBHm_Chr2g0152151
rosa_laevigata RLG00000020613
rosa_multiflora Rmu_sc0003043.1_g000017
rosa_roxburghii Rroxscaffold_2G00095880
rosa_rugosa Rorug02G0431300
rosa_samantha Rh2AG492500 Rh2BG504900 Rh2CG478900 Rh2DG516300
rosa_wichuraiana Rw0G012960 Rw2G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 150
AciI CCGC 4 cut(s) 150, 281, 500, 626
AclWI GGATC 1 cut(s) 524
AcsI RAATTY 1 cut(s) 630
AfaI GTAC 2 cut(s) 329, 493
AfiI CCNNNNNNNGG 1 cut(s) 135
AflIII ACRYGT 1 cut(s) 210
AluBI AGCT 2 cut(s) 253, 383
AluI AGCT 2 cut(s) 253, 383
Alw26I GTCTC 1 cut(s) 181
AlwI GGATC 1 cut(s) 524
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 244
ApoI RAATTY 1 cut(s) 630
AspS9I GGNCC 3 cut(s) 114, 448, 538
AsuC2I CCSGG 1 cut(s) 294
AsuHPI GGTGA 2 cut(s) 187, 535
AvaII GGWCC 3 cut(s) 114, 448, 538
AxyI CCTNAGG 1 cut(s) 534
BaeI ACNNNNGTAYC 2 cut(s) 319, 352
BbvI GCAGC 1 cut(s) 231
BccI CCATC 1 cut(s) 165
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BclI TGATCA 1 cut(s) 439
BcnI CCSGG 1 cut(s) 294
BcoDI GTCTC 1 cut(s) 181
BisI GCNGC 3 cut(s) 151, 245, 501
BlsI GCNGC 3 cut(s) 152, 246, 502
Bme1390I CCNGG 1 cut(s) 294
Bme18I GGWCC 3 cut(s) 114, 448, 538
BmgT120I GGNCC 3 cut(s) 114, 448, 538
BmiI GGNNCC 1 cut(s) 624
BmrFI CCNGG 1 cut(s) 294
BmsI GCATC 1 cut(s) 559
BplI GAGNNNNNCTC 2 cut(s) 527, 559
BpmI CTGGAG 1 cut(s) 529
BpuMI CCSGG 1 cut(s) 294
Bsa29I ATCGAT 1 cut(s) 528
BsaBI GATNNNNATC 1 cut(s) 438
BsaI GGTCTC 1 cut(s) 181
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse1I ACTGG 2 cut(s) 116, 329
Bse21I CCTNAGG 1 cut(s) 534
Bse8I GATNNNNATC 1 cut(s) 438
BseCI ATCGAT 1 cut(s) 528
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 1 cut(s) 135
BseMII CTCAG 3 cut(s) 158, 176, 525
BseNI ACTGG 2 cut(s) 116, 329
BseRI GAGGAG 1 cut(s) 533
BseXI GCAGC 1 cut(s) 231
BsgI GTGCAG 1 cut(s) 230
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 528
BsiSI CCGG 2 cut(s) 293, 404
BslI CCNNNNNNNGG 1 cut(s) 135
BsmAI GTCTC 1 cut(s) 181
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 181
Bsp143I GATC 3 cut(s) 439, 525, 529
BspACI CCGC 4 cut(s) 150, 281, 500, 626
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 159, 177, 526
BspDI ATCGAT 1 cut(s) 528
BspLI GGNNCC 1 cut(s) 624
BspPI GGATC 1 cut(s) 524
BspTNI GGTCTC 1 cut(s) 181
BsrBI CCGCTC 1 cut(s) 150
BsrI ACTGG 2 cut(s) 116, 329
BssMI GATC 3 cut(s) 439, 525, 529
Bst6I CTCTTC 1 cut(s) 219
BstAPI GCANNNNNTGC 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 164
BstDEI CTNAG 3 cut(s) 167, 185, 534
BstKTI GATC 3 cut(s) 442, 528, 532
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 3 cut(s) 439, 525, 529
BstMWI GCNNNNNNNGC 3 cut(s) 131, 159, 250
BstNSI RCATGY 1 cut(s) 214
BstSCI CCNGG 1 cut(s) 292
BstV1I GCAGC 1 cut(s) 231
Bsu15I ATCGAT 1 cut(s) 528
Bsu36I CCTNAGG 1 cut(s) 534
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 528
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 1 cut(s) 492
Cac8I GCNNGC 1 cut(s) 164
Cfr13I GGNCC 3 cut(s) 114, 448, 538
ClaI ATCGAT 1 cut(s) 528
Csp6I GTAC 2 cut(s) 328, 492
CviAII CATG 3 cut(s) 98, 211, 452
CviJI RGCY 9 cut(s) 5, 22, 86, 139, 166, 244, 253, 383, 503
CviKI_1 RGCY 9 cut(s) 5, 22, 86, 139, 166, 244, 253, 383, 503
CviQI GTAC 2 cut(s) 328, 492
DdeI CTNAG 3 cut(s) 167, 185, 534
DpnI GATC 3 cut(s) 441, 527, 531
DpnII GATC 3 cut(s) 439, 525, 529
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco31I GGTCTC 1 cut(s) 181
Eco47I GGWCC 3 cut(s) 114, 448, 538
Eco81I CCTNAGG 1 cut(s) 534
FaeI CATG 3 cut(s) 101, 214, 455
FaiI YATR 3 cut(s) 99, 212, 453
FatI CATG 3 cut(s) 97, 210, 451
FauI CCCGC 1 cut(s) 274
FbaI TGATCA 1 cut(s) 439
Fnu4HI GCNGC 3 cut(s) 151, 245, 501
Fsp4HI GCNGC 3 cut(s) 151, 245, 501
GluI GCNGC 3 cut(s) 151, 245, 501
GsuI CTGGAG 1 cut(s) 529
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 293, 404
Hin1II CATG 3 cut(s) 101, 214, 455
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 2 cut(s) 55, 142
HpaII CCGG 2 cut(s) 293, 404
HphI GGTGA 2 cut(s) 187, 535
Hpy166II GTNNAC 3 cut(s) 54, 178, 330
Hpy188I TCNGA 4 cut(s) 147, 186, 217, 444
Hpy188III TCNNGA 6 cut(s) 59, 199, 316, 511, 533, 636
Hpy8I GTNNAC 3 cut(s) 54, 178, 330
Hpy99I CGWCG 2 cut(s) 65, 394
HpyAV CCTTC 2 cut(s) 104, 439
HpyCH4V TGCA 4 cut(s) 104, 162, 247, 555
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 159, 250
HpyF3I CTNAG 3 cut(s) 167, 185, 534
Hsp92II CATG 3 cut(s) 101, 214, 455
Ksp22I TGATCA 1 cut(s) 439
Kzo9I GATC 3 cut(s) 439, 525, 529
LmnI GCTCC 2 cut(s) 147, 380
Lsp1109I GCAGC 1 cut(s) 231
LweI GCATC 1 cut(s) 559
MaeIII GTNAC 1 cut(s) 371
MalI GATC 3 cut(s) 441, 527, 531
MbiI CCGCTC 1 cut(s) 150
MboI GATC 3 cut(s) 439, 525, 529
MboII GAAGA 6 cut(s) 77, 236, 297, 581, 611, 614
MfeI CAATTG 1 cut(s) 120
MluCI AATT 5 cut(s) 120, 319, 385, 398, 630
MlyI GAGTC 1 cut(s) 49
MseI TTAA 3 cut(s) 338, 558, 585
MspI CCGG 2 cut(s) 293, 404
MspR9I CCNGG 1 cut(s) 294
MunI CAATTG 1 cut(s) 120
MwoI GCNNNNNNNGC 3 cut(s) 131, 159, 250
NciI CCSGG 1 cut(s) 294
NdeII GATC 3 cut(s) 439, 525, 529
NlaIII CATG 3 cut(s) 101, 214, 455
NlaIV GGNNCC 1 cut(s) 624
NspI RCATGY 1 cut(s) 214
PciI ACATGT 1 cut(s) 210
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 3 cut(s) 152, 246, 502
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PscI ACATGT 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 624
PspPI GGNCC 3 cut(s) 114, 448, 538
RsaI GTAC 2 cut(s) 329, 493
RsaNI GTAC 2 cut(s) 328, 492
SaqAI TTAA 3 cut(s) 338, 558, 585
SatI GCNGC 3 cut(s) 151, 245, 501
Sau3AI GATC 3 cut(s) 439, 525, 529
Sau96I GGNCC 3 cut(s) 114, 448, 538
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 1 cut(s) 294
SetI ASST 8 cut(s) 119, 255, 269, 385, 450, 525, 610, 624
SfaNI GCATC 1 cut(s) 559
SinI GGWCC 3 cut(s) 114, 448, 538
Sse9I AATT 5 cut(s) 120, 319, 385, 398, 630
SsiI CCGC 4 cut(s) 150, 281, 500, 626
SspI AATATT 1 cut(s) 565
StyD4I CCNGG 1 cut(s) 292
TaqI TCGA 4 cut(s) 81, 298, 389, 528
TasI AATT 5 cut(s) 120, 319, 385, 398, 630
TauI GCSGC 2 cut(s) 153, 503
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 3 cut(s) 338, 558, 585
Tru9I TTAA 3 cut(s) 338, 558, 585
TscAI CASTG 1 cut(s) 492
TseI GCWGC 1 cut(s) 244
TspDTI ATGAA 4 cut(s) 86, 324, 476, 612
TspRI CASTG 1 cut(s) 492
VpaK11BI GGWCC 3 cut(s) 114, 448, 538
XapI RAATTY 1 cut(s) 630
XceI RCATGY 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.