Rroxscaffold_2G00095880
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017340
Physical Location & Seq
Reverse (-)
17223644 .. 17225033
1390 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00095880.1

Sequence Viewer

Length: 636 bp
ATGGCCTCAGAGAGACAAGAGCCCACCGCAAGAGAATTCGTCAAGGGAAAGTGGACACCGCAAGAAGATGAGAAGCTAACTGAGGCTATTGAGGTTCATGGTGCAAAGAAGTGGACCTCATTAGCGTCTAAAGCAGGGCTGAATCGGAATGGCAAGAGTTGCAGGCTGAGATGGGTGAACTATCTGAGACCCAACCTCAAGAGAGGCGACATGTCTGACCAGGAAGAGGACATGATTATTAGGCTGCATAAGCTTCTTGGAAATAGGTGGTCTTTGATTGCGGGAAGATTACCGGGTCGAACAGACAATGAGATAAAGAACTACTGGAATACTCATTTGAGCAAGAAAATTAACCAGAAAGAGAAGCAGAGTAGCAATGGAGCTAATTCGACAATACAAATTCCGACAGTAGACGAGAAACCAAGTGTAGCAGATGATGATCGGAAGGTTCATGTAGAAATGAAGCAAGAGTGCTTATCATCAGGAGTGGGTACAAGTGCGGCTCTAATAAAGAAAGAGGTGATGATCGATCCTGGGGATTACTCCAACACTAACACTAACAATATTGATGTTGATGACTTCTTTAATCTCCTCGATGAAGAACCTTTGAGTTTGGAGGTTCCGCAAATTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

211

Amino Acids

23.93

Weight (kDa)

6.14

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 15 - 62 1.1e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 18 - 77 8.5e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 68 - 113 8.4e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 72 - 120 5.3e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g33950 FvH4_6g38680
rosa_chinensis RchiOBHm_Chr2g0152151
rosa_laevigata RLG00000020613
rosa_multiflora Rmu_sc0003043.1_g000017
rosa_roxburghii Rroxscaffold_2G00095880
rosa_rugosa Rorug02G0431300
rosa_samantha Rh2AG492500 Rh2BG504900 Rh2CG478900 Rh2DG516300
rosa_wichuraiana Rw0G012960 Rw2G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 411
AciI CCGC 5 cut(s) 27, 59, 281, 500, 623
AclWI GGATC 1 cut(s) 524
AcsI RAATTY 3 cut(s) 35, 399, 627
AfaI GTAC 1 cut(s) 493
AfiI CCNNNNNNNGG 1 cut(s) 226
AflIII ACRYGT 1 cut(s) 210
AjnI CCWGG 2 cut(s) 219, 532
AluBI AGCT 3 cut(s) 76, 253, 383
AluI AGCT 3 cut(s) 76, 253, 383
Alw26I GTCTC 2 cut(s) 7, 181
AlwI GGATC 1 cut(s) 524
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 244
ApoI RAATTY 3 cut(s) 35, 399, 627
AspS9I GGNCC 1 cut(s) 114
AsuC2I CCSGG 1 cut(s) 294
AsuHPI GGTGA 2 cut(s) 187, 532
AvaII GGWCC 1 cut(s) 114
BanII GRGCYC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 231
BccI CCATC 1 cut(s) 165
BciT130I CCWGG 2 cut(s) 221, 534
BcnI CCSGG 1 cut(s) 294
BcoDI GTCTC 2 cut(s) 7, 181
BisI GCNGC 2 cut(s) 245, 501
BlsI GCNGC 2 cut(s) 246, 502
Bme1390I CCNGG 3 cut(s) 221, 294, 534
Bme18I GGWCC 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 114
BmiI GGNNCC 1 cut(s) 621
BmrFI CCNGG 3 cut(s) 221, 294, 534
BpuEI CTTGAG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 294
Bsa29I ATCGAT 1 cut(s) 528
BsaBI GATNNNNATC 1 cut(s) 438
BsaI GGTCTC 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 533
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 329
Bse3DI GCAATG 1 cut(s) 382
Bse8I GATNNNNATC 1 cut(s) 438
BseBI CCWGG 2 cut(s) 221, 534
BseCI ATCGAT 1 cut(s) 528
BseDI CCNNGG 1 cut(s) 533
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMI GCAATG 1 cut(s) 382
BseMII CTCAG 4 cut(s) 21, 72, 158, 176
BseNI ACTGG 1 cut(s) 329
BseRI GAGGAG 1 cut(s) 581
BseXI GCAGC 1 cut(s) 231
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 528
BsiSI CCGG 1 cut(s) 293
BslI CCNNNNNNNGG 1 cut(s) 226
BsmAI GTCTC 2 cut(s) 7, 181
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 3 cut(s) 439, 525, 529
BspACI CCGC 5 cut(s) 27, 59, 281, 500, 623
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 4 cut(s) 20, 73, 159, 177
BspDI ATCGAT 1 cut(s) 528
BspLI GGNNCC 1 cut(s) 621
BspPI GGATC 1 cut(s) 524
BspTNI GGTCTC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 382
BsrI ACTGG 1 cut(s) 329
BssECI CCNNGG 1 cut(s) 533
BssMI GATC 3 cut(s) 439, 525, 529
Bst2UI CCWGG 2 cut(s) 221, 534
Bst4CI ACNGT 1 cut(s) 409
Bst6I CTCTTC 1 cut(s) 219
BstAPI GCANNNNNTGC 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 164
BstDEI CTNAG 4 cut(s) 7, 81, 167, 185
BstKTI GATC 3 cut(s) 442, 528, 532
BstMAI GTCTC 2 cut(s) 7, 181
BstMBI GATC 3 cut(s) 439, 525, 529
BstMWI GCNNNNNNNGC 3 cut(s) 131, 159, 250
BstNI CCWGG 2 cut(s) 221, 534
BstNSI RCATGY 1 cut(s) 214
BstSCI CCNGG 3 cut(s) 219, 292, 532
BstV1I GCAGC 1 cut(s) 231
Bsu15I ATCGAT 1 cut(s) 528
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 528
Cac8I GCNNGC 1 cut(s) 164
Cfr13I GGNCC 1 cut(s) 114
ClaI ATCGAT 1 cut(s) 528
CseI GACGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 492
CviAII CATG 4 cut(s) 98, 211, 232, 452
CviQI GTAC 1 cut(s) 492
DdeI CTNAG 4 cut(s) 7, 81, 167, 185
DpnI GATC 3 cut(s) 441, 527, 531
DpnII GATC 3 cut(s) 439, 525, 529
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 24
Eco31I GGTCTC 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 114
EcoRI GAATTC 1 cut(s) 35
EcoRII CCWGG 2 cut(s) 219, 532
EcoT38I GRGCYC 1 cut(s) 24
FaeI CATG 4 cut(s) 101, 214, 235, 455
FaiI YATR 5 cut(s) 99, 212, 233, 249, 453
FatI CATG 4 cut(s) 97, 210, 231, 451
FauI CCCGC 1 cut(s) 274
FblI GTMKAC 1 cut(s) 411
Fnu4HI GCNGC 2 cut(s) 245, 501
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 2 cut(s) 245, 501
GluI GCNGC 2 cut(s) 245, 501
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 293
HgaI GACGC 1 cut(s) 114
Hin1II CATG 4 cut(s) 101, 214, 235, 455
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 1 cut(s) 142
HpaII CCGG 1 cut(s) 293
HphI GGTGA 2 cut(s) 187, 532
Hpy166II GTNNAC 4 cut(s) 54, 114, 178, 412
Hpy188I TCNGA 6 cut(s) 10, 147, 186, 217, 405, 444
Hpy188III TCNNGA 2 cut(s) 199, 483
Hpy8I GTNNAC 4 cut(s) 54, 114, 178, 412
HpyAV CCTTC 1 cut(s) 439
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4V TGCA 3 cut(s) 104, 162, 247
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 159, 250
HpyF3I CTNAG 4 cut(s) 7, 81, 167, 185
Hsp92II CATG 4 cut(s) 101, 214, 235, 455
Kzo9I GATC 3 cut(s) 439, 525, 529
LmnI GCTCC 1 cut(s) 380
Lsp1109I GCAGC 1 cut(s) 231
MalI GATC 3 cut(s) 441, 527, 531
MboI GATC 3 cut(s) 439, 525, 529
MboII GAAGA 4 cut(s) 77, 236, 297, 611
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 5 cut(s) 35, 348, 385, 399, 627
MmeI TCCRAC 2 cut(s) 428, 570
MseI TTAA 2 cut(s) 351, 585
MspI CCGG 1 cut(s) 293
MspR9I CCNGG 3 cut(s) 221, 294, 534
MvaI CCWGG 2 cut(s) 221, 534
MwoI GCNNNNNNNGC 3 cut(s) 131, 159, 250
NciI CCSGG 1 cut(s) 294
NdeII GATC 3 cut(s) 439, 525, 529
NlaIII CATG 4 cut(s) 101, 214, 235, 455
NlaIV GGNNCC 1 cut(s) 621
NspI RCATGY 1 cut(s) 214
PciI ACATGT 1 cut(s) 210
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 2 cut(s) 246, 502
PscI ACATGT 1 cut(s) 210
Psp6I CCWGG 2 cut(s) 219, 532
PspGI CCWGG 2 cut(s) 219, 532
PspN4I GGNNCC 1 cut(s) 621
PspPI GGNCC 1 cut(s) 114
RsaI GTAC 1 cut(s) 493
RsaNI GTAC 1 cut(s) 492
SaqAI TTAA 2 cut(s) 351, 585
SatI GCNGC 2 cut(s) 245, 501
Sau3AI GATC 3 cut(s) 439, 525, 529
Sau96I GGNCC 1 cut(s) 114
ScrFI CCNGG 3 cut(s) 221, 294, 534
SduI GDGCHC 1 cut(s) 24
SinI GGWCC 1 cut(s) 114
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 5 cut(s) 35, 348, 385, 399, 627
SsiI CCGC 5 cut(s) 27, 59, 281, 500, 623
SspI AATATT 1 cut(s) 565
StyD4I CCNGG 3 cut(s) 219, 292, 532
TaaI ACNGT 1 cut(s) 409
TaqI TCGA 4 cut(s) 298, 389, 528, 594
TasI AATT 5 cut(s) 35, 348, 385, 399, 627
TauI GCSGC 1 cut(s) 503
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 2 cut(s) 351, 585
Tru9I TTAA 2 cut(s) 351, 585
TseI GCWGC 1 cut(s) 244
TspDTI ATGAA 4 cut(s) 86, 440, 476, 612
VpaK11BI GGWCC 1 cut(s) 114
XapI RAATTY 3 cut(s) 35, 399, 627
XceI RCATGY 1 cut(s) 214
XmiI GTMKAC 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.