RchiOBHm_Chr2g0152151
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0017340
Physical Location & Seq
Forward (+)
69616557 .. 69617907
1351 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52132

Sequence Viewer

Length: 636 bp
ATGGCCTCAGAGAAACAAGAGCCCACCGCAAGAGAATTCGTCAAGGGAAAGTGGACCACGCAAGAAGACGAGAAACTAACCGAGGCTATTGCAGTTCATGGTGCAAAGAAGTGGAACTCATTAGCGTCGAAAGCAGGGCTGAATCGGAATGGCAAGAGTTGCAGGCTGAGATGGGTGAACTATCTGAGACCCAACCTCAAGAGAGGCGACATGTCTGACCAGGAAGAGGACATGATTATTAGGCTGCACAAGCTTCTTGGAAATAGGTGGTCTTTGATTGCGGGAAGATTACCGGGTCGAACAGACAATGAGATAAAGAACTACTGGAATACCCATTTGAGCAAGAAAATTAACCAGAAAGAGAAGCAAAGTAGCAATGGATCTAATTCGACAATACAAATTCCCACAGTTGACGAGAAACCAAGTGTAGCAGATGATGATCGGAAGGTCCATGTAGAAATGAAGCAAGAGTGCTTATCATCAGGAGTGGGTACAAGTGCGGCTCTAATAAAGAAAGAGGTGATGATCGATCCTGAGGATTACTCCAACACCAACATTAACAATATTGATGTTGATGACTTCTTTAATCTCCTCCATAAAGAACCTTTGAGTTGGGAGGTTCCGCAAATTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

211

Amino Acids

24.05

Weight (kDa)

7.75

Isoelectric Point (pI)

44.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 15 - 62 3.6e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 18 - 77 5.5e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 68 - 113 8.4e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 72 - 120 5.5e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g33950 FvH4_6g38680
rosa_chinensis RchiOBHm_Chr2g0152151
rosa_laevigata RLG00000020613
rosa_multiflora Rmu_sc0003043.1_g000017
rosa_roxburghii Rroxscaffold_2G00095880
rosa_rugosa Rorug02G0431300
rosa_samantha Rh2AG492500 Rh2BG504900 Rh2CG478900 Rh2DG516300
rosa_wichuraiana Rw0G012960 Rw2G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 27, 281, 500, 623
AclWI GGATC 2 cut(s) 388, 524
AcsI RAATTY 3 cut(s) 35, 399, 627
AfaI GTAC 1 cut(s) 493
AfiI CCNNNNNNNGG 1 cut(s) 226
AflIII ACRYGT 1 cut(s) 210
AjnI CCWGG 1 cut(s) 219
AluBI AGCT 1 cut(s) 253
AluI AGCT 1 cut(s) 253
Alw26I GTCTC 1 cut(s) 181
AlwI GGATC 2 cut(s) 388, 524
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 244
ApoI RAATTY 3 cut(s) 35, 399, 627
AspS9I GGNCC 2 cut(s) 54, 448
AsuC2I CCSGG 1 cut(s) 294
AsuHPI GGTGA 2 cut(s) 187, 532
AvaII GGWCC 2 cut(s) 54, 448
AxyI CCTNAGG 1 cut(s) 534
BanII GRGCYC 1 cut(s) 24
BbsI GAAGAC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 231
BccI CCATC 1 cut(s) 165
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BciT130I CCWGG 1 cut(s) 221
BcnI CCSGG 1 cut(s) 294
BcoDI GTCTC 1 cut(s) 181
BisI GCNGC 2 cut(s) 245, 501
BlsI GCNGC 2 cut(s) 246, 502
Bme1390I CCNGG 2 cut(s) 221, 294
Bme18I GGWCC 2 cut(s) 54, 448
BmgT120I GGNCC 2 cut(s) 54, 448
BmiI GGNNCC 1 cut(s) 621
BmrFI CCNGG 2 cut(s) 221, 294
BpiI GAAGAC 1 cut(s) 72
BplI GAGNNNNNCTC 2 cut(s) 527, 559
BpuEI CTTGAG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 294
Bsa29I ATCGAT 1 cut(s) 528
BsaBI GATNNNNATC 1 cut(s) 438
BsaI GGTCTC 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 81
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 329
Bse21I CCTNAGG 1 cut(s) 534
Bse3DI GCAATG 1 cut(s) 382
Bse8I GATNNNNATC 1 cut(s) 438
BseBI CCWGG 1 cut(s) 221
BseCI ATCGAT 1 cut(s) 528
BseDI CCNNGG 1 cut(s) 81
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMI GCAATG 1 cut(s) 382
BseMII CTCAG 4 cut(s) 21, 158, 176, 525
BseNI ACTGG 1 cut(s) 329
BseRI GAGGAG 1 cut(s) 581
BseXI GCAGC 1 cut(s) 231
BsgI GTGCAG 1 cut(s) 230
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 528
BsiSI CCGG 1 cut(s) 293
BslI CCNNNNNNNGG 1 cut(s) 226
BsmAI GTCTC 1 cut(s) 181
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 4 cut(s) 380, 439, 525, 529
BspACI CCGC 4 cut(s) 27, 281, 500, 623
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 4 cut(s) 20, 159, 177, 526
BspDI ATCGAT 1 cut(s) 528
BspLI GGNNCC 1 cut(s) 621
BspPI GGATC 2 cut(s) 388, 524
BspTNI GGTCTC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 382
BsrI ACTGG 1 cut(s) 329
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 4 cut(s) 380, 439, 525, 529
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 409
Bst6I CTCTTC 1 cut(s) 219
BstAPI GCANNNNNTGC 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 164
BstDEI CTNAG 4 cut(s) 7, 167, 185, 534
BstKTI GATC 4 cut(s) 383, 442, 528, 532
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 4 cut(s) 380, 439, 525, 529
BstMWI GCNNNNNNNGC 3 cut(s) 131, 159, 250
BstNI CCWGG 1 cut(s) 221
BstNSI RCATGY 1 cut(s) 214
BstSCI CCNGG 2 cut(s) 219, 292
BstV1I GCAGC 1 cut(s) 231
BstV2I GAAGAC 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 380
BstYI RGATCY 1 cut(s) 380
Bsu15I ATCGAT 1 cut(s) 528
Bsu36I CCTNAGG 1 cut(s) 534
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 528
Cac8I GCNNGC 1 cut(s) 164
Cfr13I GGNCC 2 cut(s) 54, 448
ClaI ATCGAT 1 cut(s) 528
CseI GACGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 492
CviAII CATG 4 cut(s) 98, 211, 232, 452
CviJI RGCY 8 cut(s) 5, 22, 86, 139, 166, 244, 253, 503
CviKI_1 RGCY 8 cut(s) 5, 22, 86, 139, 166, 244, 253, 503
CviQI GTAC 1 cut(s) 492
DdeI CTNAG 4 cut(s) 7, 167, 185, 534
DpnI GATC 4 cut(s) 382, 441, 527, 531
DpnII GATC 4 cut(s) 380, 439, 525, 529
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 24
Eco31I GGTCTC 1 cut(s) 181
Eco47I GGWCC 2 cut(s) 54, 448
Eco81I CCTNAGG 1 cut(s) 534
EcoRI GAATTC 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 219
EcoT38I GRGCYC 1 cut(s) 24
FaeI CATG 4 cut(s) 101, 214, 235, 455
FaiI YATR 5 cut(s) 99, 212, 233, 453, 597
FatI CATG 4 cut(s) 97, 210, 231, 451
FauI CCCGC 1 cut(s) 274
Fnu4HI GCNGC 2 cut(s) 245, 501
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 2 cut(s) 245, 501
GluI GCNGC 2 cut(s) 245, 501
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 293
HgaI GACGC 1 cut(s) 114
Hin1II CATG 4 cut(s) 101, 214, 235, 455
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 1 cut(s) 142
HpaII CCGG 1 cut(s) 293
HphI GGTGA 2 cut(s) 187, 532
Hpy166II GTNNAC 3 cut(s) 54, 178, 412
Hpy188I TCNGA 5 cut(s) 10, 147, 186, 217, 444
Hpy188III TCNNGA 3 cut(s) 199, 483, 533
Hpy8I GTNNAC 3 cut(s) 54, 178, 412
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 439
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4V TGCA 4 cut(s) 92, 104, 162, 247
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 159, 250
HpyF3I CTNAG 4 cut(s) 7, 167, 185, 534
Hsp92II CATG 4 cut(s) 101, 214, 235, 455
Kzo9I GATC 4 cut(s) 380, 439, 525, 529
LpnPI CCDG 9 cut(s) 120, 148, 206, 233, 306, 310, 368, 468, 546
Lsp1109I GCAGC 1 cut(s) 231
MalI GATC 4 cut(s) 382, 441, 527, 531
MboI GATC 4 cut(s) 380, 439, 525, 529
MboII GAAGA 3 cut(s) 77, 236, 297
MflI RGATCY 1 cut(s) 380
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 5 cut(s) 35, 348, 385, 399, 627
MmeI TCCRAC 1 cut(s) 570
MnlI CCTC 9 cut(s) 16, 76, 197, 206, 220, 511, 529, 602, 610
MseI TTAA 3 cut(s) 351, 558, 585
MspI CCGG 1 cut(s) 293
MspR9I CCNGG 2 cut(s) 221, 294
MvaI CCWGG 1 cut(s) 221
MwoI GCNNNNNNNGC 3 cut(s) 131, 159, 250
NciI CCSGG 1 cut(s) 294
NdeII GATC 4 cut(s) 380, 439, 525, 529
NlaIII CATG 4 cut(s) 101, 214, 235, 455
NlaIV GGNNCC 1 cut(s) 621
NspI RCATGY 1 cut(s) 214
PciI ACATGT 1 cut(s) 210
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 2 cut(s) 246, 502
PscI ACATGT 1 cut(s) 210
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 1 cut(s) 621
PspPI GGNCC 2 cut(s) 54, 448
PsuI RGATCY 1 cut(s) 380
RsaI GTAC 1 cut(s) 493
RsaNI GTAC 1 cut(s) 492
SaqAI TTAA 3 cut(s) 351, 558, 585
SatI GCNGC 2 cut(s) 245, 501
Sau3AI GATC 4 cut(s) 380, 439, 525, 529
Sau96I GGNCC 2 cut(s) 54, 448
ScrFI CCNGG 2 cut(s) 221, 294
SduI GDGCHC 1 cut(s) 24
SetI ASST 7 cut(s) 198, 255, 269, 450, 522, 607, 621
SinI GGWCC 2 cut(s) 54, 448
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 5 cut(s) 35, 348, 385, 399, 627
SsiI CCGC 4 cut(s) 27, 281, 500, 623
SspI AATATT 1 cut(s) 565
StyD4I CCNGG 2 cut(s) 219, 292
TaaI ACNGT 1 cut(s) 409
TaqI TCGA 4 cut(s) 128, 298, 389, 528
TasI AATT 5 cut(s) 35, 348, 385, 399, 627
TauI GCSGC 1 cut(s) 503
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 3 cut(s) 351, 558, 585
Tru9I TTAA 3 cut(s) 351, 558, 585
TseI GCWGC 1 cut(s) 244
TspDTI ATGAA 2 cut(s) 86, 476
VpaK11BI GGWCC 2 cut(s) 54, 448
XapI RAATTY 3 cut(s) 35, 399, 627
XceI RCATGY 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.