FvH4_6g36000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017698
Physical Location & Seq
Reverse (-)
28359826 .. 28360450
625 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36000.t2

Sequence Viewer

Length: 309 bp
ATGTCATCACTGTCAAGACTTGTGCTTGGATGGGGCTCAAGAGGTGGAGGCATCAAAAACTCTGCAGGCAGTGCAACTGCTTGTTGTGCCAAGAAGCCGGAGCTGCTGCGTCTTCTCGCCACCAAGACGCCGGACCGAGCCGCCGTTCATGGCCTTAAGCGGCCTGTCACTCACAAGATCATAAACGAGGAAGAAGTAAAAGAGGAGATAGAGAAAGCGAAACAGGAGAAAGAAGAGAAGAGGAAAGAGGTGGAGAAGACTGTGGAATCCCAGCTCGACCGCCCCGATAAAATCTACCCTCCTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.31

Weight (kDa)

9.33

Isoelectric Point (pI)

65.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017698)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g36000 FvH4_6g36000
malus_domestica MD17G1155000.v1.1
pyrus_communis pycom09g08930 pycom17g14780
rosa_multiflora Rmu_sc0001516.1_g000038 Rmu_sc0012028.1_g000008
rosa_rugosa Rorug02G0403500
rosa_samantha Rh2AG461600 Rh2BG475300 Rh2DG483900
rosa_wichuraiana Rw2G037680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 141, 160, 280
AcyI GRCGYC 1 cut(s) 128
AflII CTTAAG 1 cut(s) 155
AluBI AGCT 2 cut(s) 103, 274
AluI AGCT 2 cut(s) 103, 274
AoxI GGCC 2 cut(s) 151, 161
ApeKI GCWGC 2 cut(s) 103, 106
AspS9I GGNCC 1 cut(s) 133
AvaII GGWCC 1 cut(s) 133
BanII GRGCYC 1 cut(s) 38
BbsI GAAGAC 2 cut(s) 104, 263
BbvI GCAGC 2 cut(s) 90, 93
BccI CCATC 1 cut(s) 24
BceAI ACGGC 1 cut(s) 128
BfaI CTAG 1 cut(s) 303
BfmI CTRYAG 1 cut(s) 63
BfrI CTTAAG 1 cut(s) 155
BisI GCNGC 4 cut(s) 104, 107, 141, 161
BlsI GCNGC 4 cut(s) 105, 108, 142, 162
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 133
BmsI GCATC 1 cut(s) 60
BpiI GAAGAC 2 cut(s) 104, 263
BpuEI CTTGAG 1 cut(s) 22
BsaHI GRCGYC 1 cut(s) 128
BseGI GGATG 1 cut(s) 35
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 2 cut(s) 90, 93
BseYI CCCAGC 1 cut(s) 270
Bsh1285I CGRYCG 1 cut(s) 280
BshFI GGCC 2 cut(s) 153, 163
BsiEI CGRYCG 1 cut(s) 280
BsiSI CCGG 2 cut(s) 98, 131
BsnI GGCC 2 cut(s) 153, 163
Bsp1286I GDGCHC 1 cut(s) 38
Bsp143I GATC 1 cut(s) 177
BspACI CCGC 3 cut(s) 141, 160, 280
BspANI GGCC 2 cut(s) 153, 163
BspMAI CTGCAG 1 cut(s) 67
BspTI CTTAAG 1 cut(s) 155
BssMI GATC 1 cut(s) 177
BssNI GRCGYC 1 cut(s) 128
Bst4CI ACNGT 2 cut(s) 12, 262
Bst6I CTCTTC 2 cut(s) 228, 233
BstACI GRCGYC 1 cut(s) 128
BstAFI CTTAAG 1 cut(s) 155
BstAPI GCANNNNNTGC 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 67
BstF5I GGATG 1 cut(s) 35
BstKTI GATC 1 cut(s) 180
BstMBI GATC 1 cut(s) 177
BstMCI CGRYCG 1 cut(s) 280
BstMWI GCNNNNNNNGC 3 cut(s) 71, 86, 103
BstSFI CTRYAG 1 cut(s) 63
BstV1I GCAGC 2 cut(s) 90, 93
BstV2I GAAGAC 2 cut(s) 104, 263
BsuRI GGCC 2 cut(s) 153, 163
BtsCI GGATG 1 cut(s) 35
BtsI GCAGTG 1 cut(s) 76
BtsIMutI CAGTG 2 cut(s) 8, 76
Cac8I GCNNGC 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 133
CpoI CGGWCCG 1 cut(s) 133
CseI GACGC 2 cut(s) 98, 136
CspI CGGWCCG 1 cut(s) 133
CviAII CATG 1 cut(s) 149
CviJI RGCY 7 cut(s) 36, 97, 103, 140, 153, 163, 274
CviKI_1 RGCY 7 cut(s) 36, 97, 103, 140, 153, 163, 274
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
Eam1104I CTCTTC 2 cut(s) 228, 233
EarI CTCTTC 2 cut(s) 228, 233
Eco24I GRGCYC 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 38
FaeI CATG 1 cut(s) 152
FaiI YATR 2 cut(s) 150, 182
FatI CATG 1 cut(s) 148
Fnu4HI GCNGC 4 cut(s) 104, 107, 141, 161
FokI GGATG 1 cut(s) 42
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 4 cut(s) 104, 107, 141, 161
FspBI CTAG 1 cut(s) 303
GluI GCNGC 4 cut(s) 104, 107, 141, 161
GsaI CCCAGC 1 cut(s) 274
HaeIII GGCC 2 cut(s) 153, 163
HapII CCGG 2 cut(s) 98, 131
HgaI GACGC 2 cut(s) 98, 136
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 1 cut(s) 152
HinfI GANTC 1 cut(s) 266
HpaII CCGG 2 cut(s) 98, 131
Hpy188III TCNNGA 2 cut(s) 15, 39
HpyCH4III ACNGT 2 cut(s) 12, 262
HpyCH4V TGCA 2 cut(s) 65, 74
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 86, 103
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 1 cut(s) 152
Kzo9I GATC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 6 cut(s) 51, 111, 144, 177, 209, 284
Lsp1109I GCAGC 2 cut(s) 90, 93
LweI GCATC 1 cut(s) 60
MaeI CTAG 1 cut(s) 303
MaeIII GTNAC 1 cut(s) 166
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 5 cut(s) 104, 203, 245, 250, 268
MhlI GDGCHC 1 cut(s) 38
MnlI CCTC 7 cut(s) 35, 41, 181, 196, 234, 241, 309
MseI TTAA 2 cut(s) 156, 307
MspCI CTTAAG 1 cut(s) 155
MspI CCGG 2 cut(s) 98, 131
MwoI GCNNNNNNNGC 3 cut(s) 71, 86, 103
NdeII GATC 1 cut(s) 177
NlaIII CATG 1 cut(s) 152
NmuCI GTSAC 1 cut(s) 166
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PfeI GAWTC 1 cut(s) 266
PkrI GCNGC 4 cut(s) 105, 108, 142, 162
PspFI CCCAGC 1 cut(s) 270
PspPI GGNCC 1 cut(s) 133
PstI CTGCAG 1 cut(s) 67
Rsr2I CGGWCCG 1 cut(s) 133
RsrII CGGWCCG 1 cut(s) 133
SaqAI TTAA 2 cut(s) 156, 307
SatI GCNGC 4 cut(s) 104, 107, 141, 161
Sau3AI GATC 1 cut(s) 177
Sau96I GGNCC 1 cut(s) 133
SduI GDGCHC 1 cut(s) 38
SetI ASST 4 cut(s) 46, 105, 252, 276
SfaNI GCATC 1 cut(s) 60
SfcI CTRYAG 1 cut(s) 63
SinI GGWCC 1 cut(s) 133
SmlI CTYRAG 2 cut(s) 37, 155
SmoI CTYRAG 2 cut(s) 37, 155
SsiI CCGC 3 cut(s) 141, 160, 280
SspMI CTAG 1 cut(s) 303
TaaI ACNGT 2 cut(s) 12, 262
TaqI TCGA 1 cut(s) 276
TaqII GACCGA 1 cut(s) 150
TauI GCSGC 2 cut(s) 143, 163
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 2 cut(s) 156, 307
Tru9I TTAA 2 cut(s) 156, 307
TscAI CASTG 2 cut(s) 15, 76
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 2 cut(s) 103, 106
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 137
TspRI CASTG 2 cut(s) 15, 76
Vha464I CTTAAG 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 133
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.