pycom09g08930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0017698
Physical Location & Seq
Forward (+)
7067832 .. 7068959
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g08930.2

Sequence Viewer

Length: 330 bp
ATGAAGCAGCACCAGGGAAGGCTAGTGTTTCGATGGTGGTCAAGAGCCGGAGGCATTACTAGCACTACCGCACAAGGTTGGCCAAACACGGCGGAGCTGCTGCCGTTGCGTTTTATGACAGCCAAAGCGCCCAACCGCGCCGCCGTTCATGGACATAGGCTGCCCATCCCTCGTGTTGTTGACGAGGAGGAAGTAGAGAAGGTGATAGAGAAAGGGAAAGAGGAGAAAGAAGAAAAGAGGCAGGAGGTGGAGAAGGCCGTCGACTCCAAAATCAACCGCAGCCGCTCCGAAGGCGACACCTGCCCTCCTGAGACTACTGCTTCTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.32

Weight (kDa)

8.85

Isoelectric Point (pI)

60.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017698)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g36000 FvH4_6g36000
malus_domestica MD17G1155000.v1.1
pyrus_communis pycom09g08930 pycom17g14780
rosa_multiflora Rmu_sc0001516.1_g000038 Rmu_sc0012028.1_g000008
rosa_rugosa Rorug02G0403500
rosa_samantha Rh2AG461600 Rh2BG475300 Rh2DG483900
rosa_wichuraiana Rw2G037680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 308
Acc36I ACCTGC 1 cut(s) 308
AccBSI CCGCTC 1 cut(s) 285
AccI GTMKAC 1 cut(s) 261
AccII CGCG 1 cut(s) 138
AciI CCGC 6 cut(s) 69, 92, 136, 141, 277, 283
AcoI YGGCCR 1 cut(s) 80
AjnI CCWGG 1 cut(s) 12
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
Alw26I GTCTC 1 cut(s) 305
AoxI GGCC 2 cut(s) 80, 255
ApeKI GCWGC 5 cut(s) 7, 97, 100, 160, 279
AspLEI GCGC 2 cut(s) 130, 140
AsuHPI GGTGA 1 cut(s) 214
BalI TGGCCA 1 cut(s) 82
BauI CACGAG 1 cut(s) 171
BbvI GCAGC 5 cut(s) 19, 84, 87, 147, 291
BccI CCATC 2 cut(s) 27, 173
BceAI ACGGC 4 cut(s) 88, 105, 128, 242
BciT130I CCWGG 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 305
BfaI CTAG 3 cut(s) 23, 60, 324
BfoI RGCGCY 1 cut(s) 131
BfuAI ACCTGC 1 cut(s) 308
BisI GCNGC 7 cut(s) 8, 98, 101, 141, 161, 280, 283
BlsI GCNGC 7 cut(s) 9, 99, 102, 142, 162, 281, 284
Bme1390I CCNGG 1 cut(s) 14
BmrFI CCNGG 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 13
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 13
BseGI GGATG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 300
BseRI GAGGAG 2 cut(s) 200, 236
BseXI GCAGC 5 cut(s) 19, 84, 87, 147, 291
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 82, 257
BsiSI CCGG 1 cut(s) 48
BsmAI GTCTC 1 cut(s) 305
BsnI GGCC 2 cut(s) 82, 257
BspACI CCGC 6 cut(s) 69, 92, 136, 141, 277, 283
BspANI GGCC 2 cut(s) 82, 257
BspCNI CTCAG 1 cut(s) 301
BspFNI CGCG 1 cut(s) 138
BspMI ACCTGC 1 cut(s) 308
BsrBI CCGCTC 1 cut(s) 285
BssECI CCNNGG 1 cut(s) 13
BssSI CACGAG 1 cut(s) 171
Bst2BI CACGAG 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 309
BstF5I GGATG 1 cut(s) 165
BstFNI CGCG 1 cut(s) 138
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 2 cut(s) 130, 140
BstMAI GTCTC 1 cut(s) 305
BstMWI GCNNNNNNNGC 4 cut(s) 60, 106, 291, 300
BstNI CCWGG 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 12
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 5 cut(s) 19, 84, 87, 147, 291
BsuRI GGCC 2 cut(s) 82, 257
BtsCI GGATG 1 cut(s) 165
BveI ACCTGC 1 cut(s) 308
CfoI GCGC 2 cut(s) 130, 140
CviAII CATG 1 cut(s) 149
CviJI RGCY 8 cut(s) 22, 47, 82, 97, 122, 160, 257, 282
CviKI_1 RGCY 8 cut(s) 22, 47, 82, 97, 122, 160, 257, 282
DdeI CTNAG 1 cut(s) 309
EaeI YGGCCR 1 cut(s) 80
EciI GGCGGA 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 12
FaeI CATG 1 cut(s) 152
FaiI YATR 3 cut(s) 116, 150, 156
FatI CATG 1 cut(s) 148
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 7 cut(s) 8, 98, 101, 141, 161, 280, 283
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 7 cut(s) 8, 98, 101, 141, 161, 280, 283
FspBI CTAG 3 cut(s) 23, 60, 324
GlaI GCGC 2 cut(s) 129, 139
GluI GCNGC 7 cut(s) 8, 98, 101, 141, 161, 280, 283
HaeII RGCGCY 1 cut(s) 131
HaeIII GGCC 2 cut(s) 82, 257
HapII CCGG 1 cut(s) 48
HhaI GCGC 2 cut(s) 130, 140
Hin1II CATG 1 cut(s) 152
Hin6I GCGC 2 cut(s) 128, 138
HinP1I GCGC 2 cut(s) 128, 138
HincII GTYRAC 2 cut(s) 181, 262
HindII GTYRAC 2 cut(s) 181, 262
HinfI GANTC 1 cut(s) 263
HpaII CCGG 1 cut(s) 48
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 2 cut(s) 181, 262
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 2 cut(s) 42, 308
Hpy8I GTNNAC 2 cut(s) 181, 262
Hpy99I CGWCG 1 cut(s) 263
HpyAV CCTTC 4 cut(s) 12, 193, 247, 284
HpyF10VI GCNNNNNNNGC 4 cut(s) 60, 106, 291, 300
HpyF3I CTNAG 1 cut(s) 309
Hsp92II CATG 1 cut(s) 152
HspAI GCGC 2 cut(s) 128, 138
LmnI GCTCC 2 cut(s) 94, 290
LpnPI CCDG 5 cut(s) 26, 61, 227, 313, 321
Lsp1109I GCAGC 5 cut(s) 19, 84, 87, 147, 291
MaeI CTAG 3 cut(s) 23, 60, 324
MbiI CCGCTC 1 cut(s) 285
MboII GAAGA 1 cut(s) 242
MlsI TGGCCA 1 cut(s) 82
MluNI TGGCCA 1 cut(s) 82
MlyI GAGTC 1 cut(s) 257
MnlI CCTC 8 cut(s) 44, 178, 180, 181, 214, 231, 238, 315
Mox20I TGGCCA 1 cut(s) 82
MscI TGGCCA 1 cut(s) 82
Msp20I TGGCCA 1 cut(s) 82
MspI CCGG 1 cut(s) 48
MspR9I CCNGG 1 cut(s) 14
MvaI CCWGG 1 cut(s) 14
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 4 cut(s) 60, 106, 291, 300
NlaIII CATG 1 cut(s) 152
PaqCI CACCTGC 1 cut(s) 308
PkrI GCNGC 7 cut(s) 9, 99, 102, 142, 162, 281, 284
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
SalI GTCGAC 1 cut(s) 260
SatI GCNGC 7 cut(s) 8, 98, 101, 141, 161, 280, 283
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 1 cut(s) 14
SetI ASST 5 cut(s) 79, 99, 204, 249, 302
SsiI CCGC 6 cut(s) 69, 92, 136, 141, 277, 283
SspMI CTAG 3 cut(s) 23, 60, 324
StyD4I CCNGG 1 cut(s) 12
TaqI TCGA 2 cut(s) 31, 261
TauI GCSGC 2 cut(s) 143, 285
TseI GCWGC 5 cut(s) 7, 97, 100, 160, 279
TspDTI ATGAA 2 cut(s) 17, 137
XmiI GTMKAC 1 cut(s) 261
XspI CTAG 3 cut(s) 23, 60, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.