Rh2DG483900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0017698
Physical Location & Seq
Reverse (-)
69957359 .. 69958169
811 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG483900.1

Sequence Viewer

Length: 234 bp
ATGCAGTCCAGACTTGTACTTGGATGGCGCTCAAGAGGTGGAGGCATCACAAGTTCTGCAGGCAGGGCAATTGCTTGTTGTGCCAAGAAGCCAGAGCTGCTGCGTCTTGTCACAACCAAGGCGCAGAACCGAGCCGCCGTTCAAGGCCTTAAGCTCCCTGTCGCTGACAAAGTCATAAATGCCCCAGGTAATTCTACCACAGTATCATATAAAACAATCATGGTCGACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.15

Weight (kDa)

10.73

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017698)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g36000 FvH4_6g36000
malus_domestica MD17G1155000.v1.1
pyrus_communis pycom09g08930 pycom17g14780
rosa_multiflora Rmu_sc0001516.1_g000038 Rmu_sc0012028.1_g000008
rosa_rugosa Rorug02G0403500
rosa_samantha Rh2AG461600 Rh2BG475300 Rh2DG483900
rosa_wichuraiana Rw2G037680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 225
AciI CCGC 1 cut(s) 135
AfaI GTAC 1 cut(s) 18
AflII CTTAAG 1 cut(s) 149
AgsI TTSAA 1 cut(s) 143
AjnI CCWGG 1 cut(s) 184
AluBI AGCT 2 cut(s) 97, 154
AluI AGCT 2 cut(s) 97, 154
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 2 cut(s) 97, 100
AspLEI GCGC 2 cut(s) 30, 124
BaeI ACNNNNGTAYC 2 cut(s) 186, 219
BbvI GCAGC 2 cut(s) 84, 87
BccI CCATC 1 cut(s) 18
BceAI ACGGC 1 cut(s) 122
BciT130I CCWGG 1 cut(s) 186
BfmI CTRYAG 1 cut(s) 57
BfoI RGCGCY 1 cut(s) 31
BfrI CTTAAG 1 cut(s) 149
BisI GCNGC 3 cut(s) 98, 101, 135
BlsI GCNGC 3 cut(s) 99, 102, 136
Bme1390I CCNGG 1 cut(s) 186
BmrFI CCNGG 1 cut(s) 186
BmsI GCATC 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 16
BsaJI CCNNGG 2 cut(s) 117, 184
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 2 cut(s) 117, 184
BseGI GGATG 1 cut(s) 29
BseXI GCAGC 2 cut(s) 84, 87
BshFI GGCC 1 cut(s) 147
BsnI GGCC 1 cut(s) 147
BspACI CCGC 1 cut(s) 135
BspANI GGCC 1 cut(s) 147
BspMAI CTGCAG 1 cut(s) 61
BspTI CTTAAG 1 cut(s) 149
BssECI CCNNGG 2 cut(s) 117, 184
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 202
BstAFI CTTAAG 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 61
BstF5I GGATG 1 cut(s) 29
BstH2I RGCGCY 1 cut(s) 31
BstHHI GCGC 2 cut(s) 30, 124
BstMWI GCNNNNNNNGC 3 cut(s) 65, 80, 97
BstNI CCWGG 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 184
BstSFI CTRYAG 1 cut(s) 57
BstV1I GCAGC 2 cut(s) 84, 87
BsuRI GGCC 1 cut(s) 147
BtsCI GGATG 1 cut(s) 29
Cac8I GCNNGC 1 cut(s) 61
CfoI GCGC 2 cut(s) 30, 124
CseI GACGC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 17
CviAII CATG 1 cut(s) 220
CviJI RGCY 5 cut(s) 91, 97, 134, 147, 154
CviKI_1 RGCY 5 cut(s) 91, 97, 134, 147, 154
CviQI GTAC 1 cut(s) 17
Eco130I CCWWGG 1 cut(s) 117
Eco147I AGGCCT 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 1 cut(s) 223
FaiI YATR 4 cut(s) 176, 208, 210, 221
FatI CATG 1 cut(s) 219
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 3 cut(s) 98, 101, 135
FokI GGATG 1 cut(s) 36
Fsp4HI GCNGC 3 cut(s) 98, 101, 135
GlaI GCGC 2 cut(s) 29, 123
GluI GCNGC 3 cut(s) 98, 101, 135
HaeII RGCGCY 1 cut(s) 31
HaeIII GGCC 1 cut(s) 147
HgaI GACGC 1 cut(s) 92
HhaI GCGC 2 cut(s) 30, 124
Hin1II CATG 1 cut(s) 223
Hin6I GCGC 2 cut(s) 28, 122
HinP1I GCGC 2 cut(s) 28, 122
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
Hpy166II GTNNAC 1 cut(s) 226
Hpy188III TCNNGA 2 cut(s) 9, 33
Hpy8I GTNNAC 1 cut(s) 226
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4V TGCA 2 cut(s) 4, 59
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 80, 97
Hsp92II CATG 1 cut(s) 223
HspAI GCGC 2 cut(s) 28, 122
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 7 cut(s) 22, 45, 49, 105, 171, 171, 198
Lsp1109I GCAGC 2 cut(s) 84, 87
LweI GCATC 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 109
MfeI CAATTG 1 cut(s) 69
MluCI AATT 2 cut(s) 69, 190
MnlI CCTC 2 cut(s) 29, 35
MseI TTAA 1 cut(s) 150
MspCI CTTAAG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 186
MunI CAATTG 1 cut(s) 69
MvaI CCWGG 1 cut(s) 186
MwoI GCNNNNNNNGC 3 cut(s) 65, 80, 97
NlaIII CATG 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 109
PceI AGGCCT 1 cut(s) 147
PflFI GACNNNGTC 1 cut(s) 170
PkrI GCNGC 3 cut(s) 99, 102, 136
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
PstI CTGCAG 1 cut(s) 61
PsyI GACNNNGTC 1 cut(s) 170
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SalI GTCGAC 1 cut(s) 224
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 3 cut(s) 98, 101, 135
ScrFI CCNGG 1 cut(s) 186
SetI ASST 4 cut(s) 40, 99, 156, 190
SfaNI GCATC 1 cut(s) 54
SfcI CTRYAG 1 cut(s) 57
SmlI CTYRAG 2 cut(s) 31, 149
SmoI CTYRAG 2 cut(s) 31, 149
Sse9I AATT 2 cut(s) 69, 190
SseBI AGGCCT 1 cut(s) 147
SsiI CCGC 1 cut(s) 135
StuI AGGCCT 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 184
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 202
TaqI TCGA 1 cut(s) 225
TasI AATT 2 cut(s) 69, 190
TatI WGTACW 1 cut(s) 16
TauI GCSGC 1 cut(s) 137
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 2 cut(s) 97, 100
Tsp45I GTSAC 1 cut(s) 109
Tth111I GACNNNGTC 1 cut(s) 170
Vha464I CTTAAG 1 cut(s) 149
XmiI GTMKAC 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.