MD17G1155000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0017698
Physical Location & Seq
Reverse (-)
14770145 .. 14771732
1588 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1155000.v1.1.491

Sequence Viewer

Length: 297 bp
ATGAAGCAGCAGCAGGGAAGACTAGTGTTTCGATGGTGGTCAAGAGCTGGAGGCATTACTGGCCCTAGTGCACCGGGTTGCCCTAACAAGGCGGAGCTGCCGCGTTTTATGACAGTCAAAGCGCCCAACCGTGCCGCCGTTCATGGACATAGGCTGCCTATCCCTCGTGTCGTTGATGAGGAACAAGTACAGAAGGTGATAGAGAAAGGGAAAGAGGAGAAAGAAGAAAAGAGGCGGGAGGTGGAGAAGGCCGTCGACTCCAAACTCAACGGCAGCCGCTGCGAGGGCGACGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.02

Weight (kDa)

9.69

Isoelectric Point (pI)

55.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017698)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g36000 FvH4_6g36000
malus_domestica MD17G1155000.v1.1
pyrus_communis pycom09g08930 pycom17g14780
rosa_multiflora Rmu_sc0001516.1_g000038 Rmu_sc0012028.1_g000008
rosa_rugosa Rorug02G0403500
rosa_samantha Rh2AG461600 Rh2BG475300 Rh2DG483900
rosa_wichuraiana Rw2G037680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 255
AccII CGCG 1 cut(s) 103
AciI CCGC 5 cut(s) 92, 101, 135, 235, 277
AcyI GRCGYC 1 cut(s) 291
AfaI GTAC 1 cut(s) 189
AfiI CCNNNNNNNGG 2 cut(s) 88, 283
AhlI ACTAGT 1 cut(s) 22
AluBI AGCT 2 cut(s) 47, 97
AluI AGCT 2 cut(s) 47, 97
Alw21I GWGCWC 1 cut(s) 73
Alw44I GTGCAC 1 cut(s) 69
AlwNI CAGNNNCTG 1 cut(s) 279
AoxI GGCC 2 cut(s) 61, 249
ApaLI GTGCAC 1 cut(s) 69
ApeKI GCWGC 6 cut(s) 7, 10, 97, 154, 273, 279
ArsI GACNNNNNNTTYG 2 cut(s) 12, 44
AspLEI GCGC 1 cut(s) 124
AspS9I GGNCC 1 cut(s) 62
AsuC2I CCSGG 1 cut(s) 75
AsuHPI GGTGA 1 cut(s) 208
BaeGI GKGCMC 1 cut(s) 73
BauI CACGAG 1 cut(s) 165
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 6 cut(s) 19, 22, 84, 141, 266, 285
BccI CCATC 1 cut(s) 27
BceAI ACGGC 3 cut(s) 122, 236, 286
BcnI CCSGG 1 cut(s) 75
BcuI ACTAGT 1 cut(s) 22
BfaI CTAG 2 cut(s) 23, 66
BfoI RGCGCY 1 cut(s) 125
BisI GCNGC 9 cut(s) 8, 11, 98, 101, 135, 155, 274, 277, 280
BlsI GCNGC 9 cut(s) 9, 12, 99, 102, 136, 156, 275, 278, 281
Bme1390I CCNGG 1 cut(s) 75
BmgT120I GGNCC 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 75
BpiI GAAGAC 1 cut(s) 25
BpmI CTGGAG 1 cut(s) 69
BpuMI CCSGG 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 291
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 283
Bse1I ACTGG 1 cut(s) 64
BseLI CCNNNNNNNGG 2 cut(s) 88, 283
BseNI ACTGG 1 cut(s) 64
BseRI GAGGAG 1 cut(s) 230
BseSI GKGCMC 1 cut(s) 73
BseXI GCAGC 6 cut(s) 19, 22, 84, 141, 266, 285
Bsh1236I CGCG 1 cut(s) 103
BshFI GGCC 2 cut(s) 63, 251
BsiHKAI GWGCWC 1 cut(s) 73
BsiSI CCGG 1 cut(s) 74
BslI CCNNNNNNNGG 2 cut(s) 88, 283
BsnI GGCC 2 cut(s) 63, 251
Bsp1286I GDGCHC 1 cut(s) 73
BspACI CCGC 5 cut(s) 92, 101, 135, 235, 277
BspANI GGCC 2 cut(s) 63, 251
BspFNI CGCG 1 cut(s) 103
BsrI ACTGG 1 cut(s) 64
BssNI GRCGYC 1 cut(s) 291
BssSI CACGAG 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 165
Bst4CI ACNGT 2 cut(s) 115, 131
BstACI GRCGYC 1 cut(s) 291
BstAPI GCANNNNNTGC 1 cut(s) 279
BstFNI CGCG 1 cut(s) 103
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 1 cut(s) 124
BstMWI GCNNNNNNNGC 3 cut(s) 60, 279, 285
BstSCI CCNGG 1 cut(s) 73
BstSLI GKGCMC 1 cut(s) 73
BstUI CGCG 1 cut(s) 103
BstV1I GCAGC 6 cut(s) 19, 22, 84, 141, 266, 285
BstV2I GAAGAC 1 cut(s) 25
BsuRI GGCC 2 cut(s) 63, 251
CaiI CAGNNNCTG 1 cut(s) 279
CfoI GCGC 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 62
Csp6I GTAC 1 cut(s) 188
CviAII CATG 1 cut(s) 143
CviJI RGCY 6 cut(s) 47, 63, 97, 154, 251, 276
CviKI_1 RGCY 6 cut(s) 47, 63, 97, 154, 251, 276
CviQI GTAC 1 cut(s) 188
EciI GGCGGA 1 cut(s) 107
FaeI CATG 1 cut(s) 146
FaiI YATR 3 cut(s) 110, 144, 150
FatI CATG 1 cut(s) 142
FauI CCCGC 1 cut(s) 228
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 9 cut(s) 8, 11, 98, 101, 135, 155, 274, 277, 280
Fsp4HI GCNGC 9 cut(s) 8, 11, 98, 101, 135, 155, 274, 277, 280
FspBI CTAG 2 cut(s) 23, 66
GlaI GCGC 1 cut(s) 123
GluI GCNGC 9 cut(s) 8, 11, 98, 101, 135, 155, 274, 277, 280
GsuI CTGGAG 1 cut(s) 69
HaeII RGCGCY 1 cut(s) 125
HaeIII GGCC 2 cut(s) 63, 251
HapII CCGG 1 cut(s) 74
HhaI GCGC 1 cut(s) 124
Hin1I GRCGYC 1 cut(s) 291
Hin1II CATG 1 cut(s) 146
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 1 cut(s) 257
HpaII CCGG 1 cut(s) 74
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 2 cut(s) 71, 256
Hpy188III TCNNGA 1 cut(s) 42
Hpy8I GTNNAC 2 cut(s) 71, 256
Hpy99I CGWCG 2 cut(s) 257, 293
HpyAV CCTTC 2 cut(s) 187, 241
HpyCH4III ACNGT 2 cut(s) 115, 131
HpyCH4V TGCA 1 cut(s) 71
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 279, 285
Hsp92I GRCGYC 1 cut(s) 291
Hsp92II CATG 1 cut(s) 146
HspAI GCGC 1 cut(s) 122
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 3 cut(s) 33, 45, 87
Lsp1109I GCAGC 6 cut(s) 19, 22, 84, 141, 266, 285
MaeI CTAG 2 cut(s) 23, 66
MboII GAAGA 2 cut(s) 30, 236
MhlI GDGCHC 1 cut(s) 73
MlyI GAGTC 1 cut(s) 251
MnlI CCTC 7 cut(s) 44, 172, 174, 208, 225, 232, 277
MspA1I CMGCKG 1 cut(s) 279
MspI CCGG 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 75
MvnI CGCG 1 cut(s) 103
MwoI GCNNNNNNNGC 3 cut(s) 60, 279, 285
NciI CCSGG 1 cut(s) 75
NlaIII CATG 1 cut(s) 146
PkrI GCNGC 9 cut(s) 9, 12, 99, 102, 136, 156, 275, 278, 281
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
PspPI GGNCC 1 cut(s) 62
PstNI CAGNNNCTG 1 cut(s) 279
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
SalI GTCGAC 1 cut(s) 254
SatI GCNGC 9 cut(s) 8, 11, 98, 101, 135, 155, 274, 277, 280
Sau96I GGNCC 1 cut(s) 62
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 75
SduI GDGCHC 1 cut(s) 73
SetI ASST 4 cut(s) 49, 99, 198, 243
SpeI ACTAGT 1 cut(s) 22
SsiI CCGC 5 cut(s) 92, 101, 135, 235, 277
SspMI CTAG 2 cut(s) 23, 66
StyD4I CCNGG 1 cut(s) 73
TaaI ACNGT 2 cut(s) 115, 131
TaqI TCGA 2 cut(s) 31, 255
TatI WGTACW 1 cut(s) 187
TauI GCSGC 3 cut(s) 103, 137, 279
TseI GCWGC 6 cut(s) 7, 10, 97, 154, 273, 279
TspDTI ATGAA 2 cut(s) 17, 131
VneI GTGCAC 1 cut(s) 69
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 2 cut(s) 23, 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.