Rh2AG461600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0017698
Physical Location & Seq
Reverse (-)
67889684 .. 67891068
1385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG461600.1

Sequence Viewer

Length: 288 bp
ATGCAGTCAAGACTTATACTTGGGTGGCGCTCAAGAGGTGGAGGCATCACAAATTCTGCAGGCTGCAGTGCAGCTGTTTGTTGTGCAGAGAAGCCAGGGCTGCTGCGACTTGTCACAAACAAGGCGCCGAACCGAGCCGCCGTTCATGGCCTTAAGCGGCCTGTCACCGACAAAATTTTTCCGGATCTCTGTTTCCTTCAATCACTTTTAGAGAATCACACCCATCCTCCAAATCTAGGACAGGAGCAGATACTTCACACAATGAACTACTTTCCGTTAAAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.45

Weight (kDa)

9.76

Isoelectric Point (pI)

47.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017698)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g36000 FvH4_6g36000
malus_domestica MD17G1155000.v1.1
pyrus_communis pycom09g08930 pycom17g14780
rosa_multiflora Rmu_sc0001516.1_g000038 Rmu_sc0012028.1_g000008
rosa_rugosa Rorug02G0403500
rosa_samantha Rh2AG461600 Rh2BG475300 Rh2DG483900
rosa_wichuraiana Rw2G037680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 124
AccIII TCCGGA 1 cut(s) 181
AciI CCGC 2 cut(s) 138, 157
AclWI GGATC 1 cut(s) 192
AcsI RAATTY 2 cut(s) 52, 174
AcyI GRCGYC 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 236
AflII CTTAAG 1 cut(s) 152
AgsI TTSAA 1 cut(s) 200
AjnI CCWGG 1 cut(s) 94
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
AlwI GGATC 1 cut(s) 192
Aor13HI TCCGGA 1 cut(s) 181
AoxI GGCC 2 cut(s) 148, 158
ApeKI GCWGC 4 cut(s) 63, 71, 100, 103
ApoI RAATTY 2 cut(s) 52, 174
AspLEI GCGC 2 cut(s) 30, 127
AsuHPI GGTGA 1 cut(s) 157
BanI GGYRCC 1 cut(s) 124
BbvI GCAGC 4 cut(s) 50, 83, 87, 90
BccI CCATC 1 cut(s) 231
BceAI ACGGC 1 cut(s) 125
BciT130I CCWGG 1 cut(s) 96
BfaI CTAG 1 cut(s) 236
BfmI CTRYAG 2 cut(s) 57, 64
BfoI RGCGCY 2 cut(s) 31, 128
BfrI CTTAAG 1 cut(s) 152
BisI GCNGC 6 cut(s) 64, 72, 101, 104, 138, 158
BlsI GCNGC 6 cut(s) 65, 73, 102, 105, 139, 159
Bme1390I CCNGG 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 126
BmrFI CCNGG 1 cut(s) 96
BmsI GCATC 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 16
BsaHI GRCGYC 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 95
BsaWI WCCGGW 1 cut(s) 181
BsaXI ACNNNNNCTCC 2 cut(s) 211, 241
Bsc4I CCNNNNNNNGG 1 cut(s) 236
BseAI TCCGGA 1 cut(s) 181
BseBI CCWGG 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 236
BseXI GCAGC 4 cut(s) 50, 83, 87, 90
BsgI GTGCAG 2 cut(s) 90, 105
BshFI GGCC 2 cut(s) 150, 160
BshNI GGYRCC 1 cut(s) 124
BsiSI CCGG 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 236
BsnI GGCC 2 cut(s) 150, 160
Bsp13I TCCGGA 1 cut(s) 181
Bsp143I GATC 1 cut(s) 184
BspACI CCGC 2 cut(s) 138, 157
BspANI GGCC 2 cut(s) 150, 160
BspEI TCCGGA 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 126
BspMAI CTGCAG 2 cut(s) 61, 68
BspPI GGATC 1 cut(s) 192
BspT107I GGYRCC 1 cut(s) 124
BspTI CTTAAG 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 1 cut(s) 184
BssNI GRCGYC 1 cut(s) 125
Bst2UI CCWGG 1 cut(s) 96
BstACI GRCGYC 1 cut(s) 125
BstAFI CTTAAG 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 61
BstF5I GGATG 1 cut(s) 223
BstH2I RGCGCY 2 cut(s) 31, 128
BstHHI GCGC 2 cut(s) 30, 127
BstKTI GATC 1 cut(s) 187
BstMBI GATC 1 cut(s) 184
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstNI CCWGG 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 94
BstSFI CTRYAG 2 cut(s) 57, 64
BstV1I GCAGC 4 cut(s) 50, 83, 87, 90
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
BsuRI GGCC 2 cut(s) 150, 160
BtsCI GGATG 1 cut(s) 223
BtsI GCAGTG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 61
CfoI GCGC 2 cut(s) 30, 127
CviAII CATG 1 cut(s) 146
CviJI RGCY 7 cut(s) 63, 74, 94, 100, 137, 150, 160
CviKI_1 RGCY 7 cut(s) 63, 74, 94, 100, 137, 150, 160
DinI GGCGCC 1 cut(s) 126
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 94
EgeI GGCGCC 1 cut(s) 126
EheI GGCGCC 1 cut(s) 126
FaeI CATG 1 cut(s) 149
FaiI YATR 2 cut(s) 17, 147
FatI CATG 1 cut(s) 145
Fnu4HI GCNGC 6 cut(s) 64, 72, 101, 104, 138, 158
FokI GGATG 1 cut(s) 210
Fsp4HI GCNGC 6 cut(s) 64, 72, 101, 104, 138, 158
FspBI CTAG 1 cut(s) 236
GlaI GCGC 2 cut(s) 29, 126
GluI GCNGC 6 cut(s) 64, 72, 101, 104, 138, 158
HaeII RGCGCY 2 cut(s) 31, 128
HaeIII GGCC 2 cut(s) 150, 160
HapII CCGG 1 cut(s) 182
HhaI GCGC 2 cut(s) 30, 127
Hin1I GRCGYC 1 cut(s) 125
Hin1II CATG 1 cut(s) 149
Hin6I GCGC 2 cut(s) 28, 125
HinP1I GCGC 2 cut(s) 28, 125
HinfI GANTC 1 cut(s) 214
HpaII CCGG 1 cut(s) 182
HphI GGTGA 1 cut(s) 157
Hpy188III TCNNGA 3 cut(s) 9, 33, 182
HpyAV CCTTC 1 cut(s) 206
HpyCH4V TGCA 5 cut(s) 4, 59, 66, 71, 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
Hsp92I GRCGYC 1 cut(s) 125
Hsp92II CATG 1 cut(s) 149
HspAI GCGC 2 cut(s) 28, 125
KasI GGCGCC 1 cut(s) 124
Kpn2I TCCGGA 1 cut(s) 181
Kzo9I GATC 1 cut(s) 184
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 6 cut(s) 45, 81, 108, 174, 195, 227
Lsp1109I GCAGC 4 cut(s) 50, 83, 87, 90
LweI GCATC 1 cut(s) 54
MaeI CTAG 1 cut(s) 236
MaeIII GTNAC 2 cut(s) 112, 163
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MflI RGATCY 1 cut(s) 184
MluCI AATT 2 cut(s) 52, 174
Mly113I GGCGCC 1 cut(s) 125
MnlI CCTC 3 cut(s) 29, 35, 237
MroI TCCGGA 1 cut(s) 181
MseI TTAA 2 cut(s) 153, 278
MspA1I CMGCKG 1 cut(s) 74
MspCI CTTAAG 1 cut(s) 152
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 1 cut(s) 96
MvaI CCWGG 1 cut(s) 96
MwoI GCNNNNNNNGC 1 cut(s) 100
NarI GGCGCC 1 cut(s) 125
NdeII GATC 1 cut(s) 184
NlaIII CATG 1 cut(s) 149
NlaIV GGNNCC 1 cut(s) 126
NmuCI GTSAC 2 cut(s) 112, 163
PfeI GAWTC 1 cut(s) 214
PkrI GCNGC 6 cut(s) 65, 73, 102, 105, 139, 159
PluTI GGCGCC 1 cut(s) 128
Psp6I CCWGG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 126
PstI CTGCAG 2 cut(s) 61, 68
PsuI RGATCY 1 cut(s) 184
PvuII CAGCTG 1 cut(s) 74
SaqAI TTAA 2 cut(s) 153, 278
SatI GCNGC 6 cut(s) 64, 72, 101, 104, 138, 158
Sau3AI GATC 1 cut(s) 184
ScrFI CCNGG 1 cut(s) 96
SetI ASST 2 cut(s) 40, 76
SfaNI GCATC 1 cut(s) 54
SfcI CTRYAG 2 cut(s) 57, 64
SfoI GGCGCC 1 cut(s) 126
SmlI CTYRAG 2 cut(s) 31, 152
SmoI CTYRAG 2 cut(s) 31, 152
Sse9I AATT 2 cut(s) 52, 174
SsiI CCGC 2 cut(s) 138, 157
SspDI GGCGCC 1 cut(s) 124
SspMI CTAG 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 94
TasI AATT 2 cut(s) 52, 174
TauI GCSGC 2 cut(s) 140, 160
TfiI GAWTC 1 cut(s) 214
Tru1I TTAA 2 cut(s) 153, 278
Tru9I TTAA 2 cut(s) 153, 278
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 2 cut(s) 112, 163
TseI GCWGC 4 cut(s) 63, 71, 100, 103
Tsp45I GTSAC 2 cut(s) 112, 163
TspDTI ATGAA 2 cut(s) 134, 278
TspGWI ACGGA 1 cut(s) 264
TspRI CASTG 1 cut(s) 73
Vha464I CTTAAG 1 cut(s) 152
XapI RAATTY 2 cut(s) 52, 174
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.