FvH4_6g36840

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016896
Physical Location & Seq
Reverse (-)
28925753 .. 28926310
558 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36840.t1

Sequence Viewer

Length: 462 bp
ATGGCCACCTGCACAAGCAAAAGTTCCAAAACAATCCGGCAAGCCATCCAACTCAAACAAGTGATGAAGCTGTGGAAAGCCATAAGCGTCGTCAATGGTAAATCCAACCCCACTCCCTCTGGCTTCCTTCCTGTTTATGTCGGATGGGACCGAACCCGGTTCTTGATTCCTACCCGATTCCTCAAATATCCGATATTTGTGGCTCTTCTTGAGAAATCGGGAGAGGAATTCGGGTTCAAGATCAGTGGAGGGATAGTGTTGCCATGCGATGTTGAGTTCTTCAAAGAAGTACTGCATTTGCTTCAGAAGGATGAGAAGAGGTATGGTGGCTTAGAGCTCGACCAGTTCCTGAAGACAATTTCTGAGGTGAGTACTCATCATTTTGATTGCAAGATGGAAGACGGCAATGCTTATGGTCAATTTGTTGATGGACTTAGAGAACCTTTGACGGAGAAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

154

Amino Acids

17.35

Weight (kDa)

8.73

Isoelectric Point (pI)

28.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 31 - 101 1.6e-21 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016896)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g36840
malus_domestica MD09G1166400.v1.1
prunus_persica Prupe.3G024100_v2.0.a1
pyrus_communis pycom09g08390
rosa_chinensis RchiOBHm_Chr2g0149231
rosa_laevigata RLG00000020385
rosa_multiflora Rmu_sc0001615.1_g000006
rosa_roxburghii Rroxscaffold_2G00098290
rosa_rugosa Rorug02G0410000
rosa_samantha Rh2AG470500 Rh2BG482700 Rh2CG456400 Rh2DG491800
rosa_wichuraiana Rw2G038260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 17
Acc36I ACCTGC 1 cut(s) 17
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 227
AcuI CTGAAG 2 cut(s) 287, 371
AfaI GTAC 2 cut(s) 291, 373
AgsI TTSAA 2 cut(s) 238, 283
AloI GAACNNNNNNTCC 2 cut(s) 218, 250
AluBI AGCT 2 cut(s) 70, 337
AluI AGCT 2 cut(s) 70, 337
Alw21I GWGCWC 1 cut(s) 339
AlwNI CAGNNNCTG 1 cut(s) 349
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 227
AspS9I GGNCC 1 cut(s) 148
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 379
AvaII GGWCC 1 cut(s) 148
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 339
BbsI GAAGAC 2 cut(s) 359, 405
Bbv12I GWGCWC 1 cut(s) 339
BccI CCATC 4 cut(s) 53, 138, 388, 422
BceAI ACGGC 1 cut(s) 418
BcnI CCSGG 1 cut(s) 157
BfuAI ACCTGC 1 cut(s) 17
BmcAI AGTACT 2 cut(s) 291, 373
Bme1390I CCNGG 1 cut(s) 157
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 149
BmrFI CCNGG 1 cut(s) 157
BpiI GAAGAC 2 cut(s) 359, 405
BpuEI CTTGAG 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 157
BsaXI ACNNNNNCTCC 2 cut(s) 240, 270
Bse1I ACTGG 1 cut(s) 343
Bse3DI GCAATG 1 cut(s) 412
BseGI GGATG 3 cut(s) 45, 149, 316
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 1 cut(s) 354
BseNI ACTGG 1 cut(s) 343
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 339
BsiSI CCGG 2 cut(s) 37, 157
BslFI GGGAC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 339
Bsp143I GATC 1 cut(s) 240
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 355
BspLI GGNNCC 1 cut(s) 149
BspMI ACCTGC 1 cut(s) 17
BspQI GCTCTTC 1 cut(s) 210
BsrDI GCAATG 1 cut(s) 412
BsrI ACTGG 1 cut(s) 343
BssMI GATC 1 cut(s) 240
Bst6I CTCTTC 2 cut(s) 210, 311
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 3 cut(s) 331, 363, 434
BstF5I GGATG 3 cut(s) 45, 149, 316
BstKTI GATC 1 cut(s) 243
BstMBI GATC 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 155
BstV2I GAAGAC 2 cut(s) 359, 405
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 282
BtsCI GGATG 3 cut(s) 45, 149, 316
BtsIMutI CAGTG 1 cut(s) 250
BveI ACCTGC 1 cut(s) 17
Cac8I GCNNGC 1 cut(s) 42
CaiI CAGNNNCTG 1 cut(s) 349
Cfr13I GGNCC 1 cut(s) 148
CseI GACGC 1 cut(s) 76
Csp6I GTAC 2 cut(s) 290, 372
CspCI CAANNNNNGTGG 2 cut(s) 226, 261
CviAII CATG 1 cut(s) 264
CviJI RGCY 8 cut(s) 5, 44, 70, 80, 123, 203, 330, 337
CviKI_1 RGCY 8 cut(s) 5, 44, 70, 80, 123, 203, 330, 337
CviQI GTAC 2 cut(s) 290, 372
DdeI CTNAG 3 cut(s) 331, 363, 434
DpnI GATC 1 cut(s) 242
DpnII GATC 1 cut(s) 240
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 210, 311
EarI CTCTTC 2 cut(s) 210, 311
Ecl136II GAGCTC 1 cut(s) 337
Eco24I GRGCYC 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 148
Eco53kI GAGCTC 1 cut(s) 337
Eco57I CTGAAG 2 cut(s) 287, 371
EcoICRI GAGCTC 1 cut(s) 337
EcoRI GAATTC 1 cut(s) 227
EcoT38I GRGCYC 1 cut(s) 339
FaeI CATG 1 cut(s) 267
FaiI YATR 6 cut(s) 83, 138, 265, 324, 414, 460
FaqI GGGAC 1 cut(s) 161
FatI CATG 1 cut(s) 263
FokI GGATG 3 cut(s) 32, 156, 323
FriOI GRGCYC 1 cut(s) 339
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 37, 157
HgaI GACGC 1 cut(s) 76
Hin1II CATG 1 cut(s) 267
HinfI GANTC 2 cut(s) 166, 177
HpaII CCGG 2 cut(s) 37, 157
HphI GGTGA 1 cut(s) 379
Hpy188I TCNGA 4 cut(s) 143, 192, 306, 364
Hpy188III TCNNGA 5 cut(s) 163, 209, 219, 238, 349
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 137, 301
HpyCH4V TGCA 3 cut(s) 12, 295, 390
HpyF3I CTNAG 3 cut(s) 331, 363, 434
Hsp92II CATG 1 cut(s) 267
Kzo9I GATC 1 cut(s) 240
LguI GCTCTTC 1 cut(s) 210
LpnPI CCDG 7 cut(s) 22, 50, 105, 144, 170, 356, 362
MalI GATC 1 cut(s) 242
MboI GATC 1 cut(s) 240
MboII GAAGA 5 cut(s) 197, 271, 328, 364, 410
MhlI GDGCHC 1 cut(s) 339
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 227, 357, 419
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 3 cut(s) 73, 121, 129
MnlI CCTC 6 cut(s) 127, 191, 217, 242, 312, 358
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 37, 157
MspR9I CCNGG 1 cut(s) 157
NciI CCSGG 1 cut(s) 157
NdeII GATC 1 cut(s) 240
NlaIII CATG 1 cut(s) 267
NlaIV GGNNCC 1 cut(s) 149
PaqCI CACCTGC 1 cut(s) 17
PciSI GCTCTTC 1 cut(s) 210
PfeI GAWTC 2 cut(s) 166, 177
Psp124BI GAGCTC 1 cut(s) 339
PspN4I GGNNCC 1 cut(s) 149
PspPI GGNCC 1 cut(s) 148
PstNI CAGNNNCTG 1 cut(s) 349
RsaI GTAC 2 cut(s) 291, 373
RsaNI GTAC 2 cut(s) 290, 372
SacI GAGCTC 1 cut(s) 339
SapI GCTCTTC 1 cut(s) 210
Sau3AI GATC 1 cut(s) 240
Sau96I GGNCC 1 cut(s) 148
ScaI AGTACT 2 cut(s) 291, 373
ScrFI CCNGG 1 cut(s) 157
SduI GDGCHC 1 cut(s) 339
SetI ASST 6 cut(s) 11, 72, 323, 339, 369, 445
SinI GGWCC 1 cut(s) 148
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 3 cut(s) 227, 357, 419
SstI GAGCTC 1 cut(s) 339
StyD4I CCNGG 1 cut(s) 155
TaqI TCGA 1 cut(s) 339
TaqII GACCGA 1 cut(s) 165
TasI AATT 3 cut(s) 227, 357, 419
TatI WGTACW 2 cut(s) 289, 371
TfiI GAWTC 2 cut(s) 166, 177
TscAI CASTG 1 cut(s) 250
TspDTI ATGAA 1 cut(s) 80
TspRI CASTG 1 cut(s) 250
VpaK11BI GGWCC 1 cut(s) 148
XapI RAATTY 1 cut(s) 227
ZrmI AGTACT 2 cut(s) 291, 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.