Rh2AG470500

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0016896
Physical Location & Seq
Reverse (-)
69018725 .. 69019247
523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG470500.1

Sequence Viewer

Length: 465 bp
ATGGCAACCCCCACAAGCAAAAGTTCCAAAACAATCCGGCAAGCCATCCAACTCAAACAAGTGATGAAGCTCTGGAAGGCCATAATCGTCAATGGCAAATCCAACCCCACTCCCTCTGGCTTTCTTCCTGTTTATGTTGGATGGTACCGAATCCGGTTCTTGATTCCTACCCGATTCCTCAAATATCCGATATTTGTGGCTCTTCTTGACAAATCTGGAGAGGAATTTGGGTTCAAGATCAGTGGAGGGATAGTGTTGCCATGTGATGTTGAGTTCTTCAAAGAAATACTCAATTTGCTTCAGAAGAATGAGAAGAGGTACGGTGGCTTAGAGCTTGATCAGTTCCTGAAGAAAATTTCTGAGGTGAGTACTCATTTTGATTCCTCTACCTGCAAGAAGGAAGATGGCTATGCTTATGGTCAATTTGTTGATGGACTTAGAGAACCTTTGATGGAGAAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

154

Amino Acids

17.55

Weight (kDa)

9.39

Isoelectric Point (pI)

26.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 31 - 100 2.9e-20 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016896)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g36840
malus_domestica MD09G1166400.v1.1
prunus_persica Prupe.3G024100_v2.0.a1
pyrus_communis pycom09g08390
rosa_chinensis RchiOBHm_Chr2g0149231
rosa_laevigata RLG00000020385
rosa_multiflora Rmu_sc0001615.1_g000006
rosa_roxburghii Rroxscaffold_2G00098290
rosa_rugosa Rorug02G0410000
rosa_samantha Rh2AG470500 Rh2BG482700 Rh2CG456400 Rh2DG491800
rosa_wichuraiana Rw2G038260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 398
Acc65I GGTACC 1 cut(s) 144
AccB1I GGYRCC 1 cut(s) 144
AcsI RAATTY 2 cut(s) 224, 354
AcuI CTGAAG 2 cut(s) 284, 368
AfaI GTAC 3 cut(s) 146, 320, 370
AgsI TTSAA 2 cut(s) 235, 280
AloI GAACNNNNNNTCC 2 cut(s) 215, 247
AluBI AGCT 2 cut(s) 70, 334
AluI AGCT 2 cut(s) 70, 334
AlwNI CAGNNNCTG 1 cut(s) 346
AoxI GGCC 1 cut(s) 78
ApoI RAATTY 2 cut(s) 224, 354
Asp718I GGTACC 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 376
BanI GGYRCC 1 cut(s) 144
BccI CCATC 5 cut(s) 53, 135, 398, 425, 445
BclI TGATCA 1 cut(s) 337
BfuAI ACCTGC 1 cut(s) 398
BmcAI AGTACT 1 cut(s) 370
BmiI GGNNCC 1 cut(s) 146
BpmI CTGGAG 1 cut(s) 237
BsaWI WCCGGW 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
BseGI GGATG 2 cut(s) 45, 146
BseMII CTCAG 1 cut(s) 351
BshFI GGCC 1 cut(s) 80
BshNI GGYRCC 1 cut(s) 144
BsiSI CCGG 2 cut(s) 37, 154
BsnI GGCC 1 cut(s) 80
Bsp143I GATC 2 cut(s) 237, 337
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 352
BspLI GGNNCC 1 cut(s) 146
BspMI ACCTGC 1 cut(s) 398
BspQI GCTCTTC 1 cut(s) 207
BspT107I GGYRCC 1 cut(s) 144
BssMI GATC 2 cut(s) 237, 337
Bst4CI ACNGT 1 cut(s) 323
Bst6I CTCTTC 2 cut(s) 207, 308
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 3 cut(s) 328, 360, 437
BstF5I GGATG 2 cut(s) 45, 146
BstKTI GATC 2 cut(s) 240, 340
BstMBI GATC 2 cut(s) 237, 337
BsuRI GGCC 1 cut(s) 80
BtsCI GGATG 2 cut(s) 45, 146
BtsIMutI CAGTG 1 cut(s) 247
BveI ACCTGC 1 cut(s) 398
Cac8I GCNNGC 1 cut(s) 42
CaiI CAGNNNCTG 1 cut(s) 346
Csp6I GTAC 3 cut(s) 145, 319, 369
CspCI CAANNNNNGTGG 2 cut(s) 223, 258
CviAII CATG 1 cut(s) 261
CviJI RGCY 8 cut(s) 44, 70, 80, 120, 200, 327, 334, 408
CviKI_1 RGCY 8 cut(s) 44, 70, 80, 120, 200, 327, 334, 408
CviQI GTAC 3 cut(s) 145, 319, 369
DdeI CTNAG 3 cut(s) 328, 360, 437
DpnI GATC 2 cut(s) 239, 339
DpnII GATC 2 cut(s) 237, 337
Eam1104I CTCTTC 2 cut(s) 207, 308
EarI CTCTTC 2 cut(s) 207, 308
Eco57I CTGAAG 2 cut(s) 284, 368
FaeI CATG 1 cut(s) 264
FaiI YATR 6 cut(s) 83, 135, 262, 411, 417, 463
FatI CATG 1 cut(s) 260
FbaI TGATCA 1 cut(s) 337
FokI GGATG 2 cut(s) 32, 153
GsuI CTGGAG 1 cut(s) 237
HaeIII GGCC 1 cut(s) 80
HapII CCGG 2 cut(s) 37, 154
Hin1II CATG 1 cut(s) 264
HinfI GANTC 4 cut(s) 150, 163, 174, 380
HpaII CCGG 2 cut(s) 37, 154
HphI GGTGA 1 cut(s) 376
Hpy188I TCNGA 3 cut(s) 189, 303, 361
Hpy188III TCNNGA 6 cut(s) 73, 160, 206, 216, 235, 346
HpyAV CCTTC 2 cut(s) 70, 391
HpyCH4III ACNGT 1 cut(s) 323
HpyCH4V TGCA 1 cut(s) 393
HpyF3I CTNAG 3 cut(s) 328, 360, 437
Hsp92II CATG 1 cut(s) 264
KpnI GGTACC 1 cut(s) 148
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 2 cut(s) 237, 337
LguI GCTCTTC 1 cut(s) 207
LpnPI CCDG 8 cut(s) 50, 58, 102, 141, 167, 201, 359, 403
MalI GATC 2 cut(s) 239, 339
MboI GATC 2 cut(s) 237, 337
MboII GAAGA 7 cut(s) 116, 194, 268, 316, 325, 361, 413
MluCI AATT 4 cut(s) 224, 292, 354, 422
MmeI TCCRAC 3 cut(s) 73, 118, 126
MnlI CCTC 7 cut(s) 124, 188, 214, 239, 309, 355, 394
MspI CCGG 2 cut(s) 37, 154
NdeII GATC 2 cut(s) 237, 337
NlaIII CATG 1 cut(s) 264
NlaIV GGNNCC 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 207
PfeI GAWTC 4 cut(s) 150, 163, 174, 380
PspN4I GGNNCC 1 cut(s) 146
PstNI CAGNNNCTG 1 cut(s) 346
RsaI GTAC 3 cut(s) 146, 320, 370
RsaNI GTAC 3 cut(s) 145, 319, 369
SapI GCTCTTC 1 cut(s) 207
Sau3AI GATC 2 cut(s) 237, 337
ScaI AGTACT 1 cut(s) 370
SetI ASST 6 cut(s) 72, 320, 336, 366, 392, 448
Sse9I AATT 4 cut(s) 224, 292, 354, 422
TaaI ACNGT 1 cut(s) 323
TasI AATT 4 cut(s) 224, 292, 354, 422
TatI WGTACW 1 cut(s) 368
TfiI GAWTC 4 cut(s) 150, 163, 174, 380
TscAI CASTG 1 cut(s) 247
TspDTI ATGAA 1 cut(s) 80
TspRI CASTG 1 cut(s) 247
XapI RAATTY 2 cut(s) 224, 354
ZrmI AGTACT 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.