MD09G1166400.v1.1

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0016896
Physical Location & Seq
Forward (+)
13644321 .. 13644788
468 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1166400.v1.1.491

Sequence Viewer

Length: 468 bp
ATGGCAACTACAAGCAAAAGGGTCAAAACAATCATGCCGGCAATCCAACTCAAACAAGTAATGAAGCTTTGGAAGGCCATAAGTCTCAATGGAAAATCTTCTCCTGCTCCCTCAGGTTTCCTTCCTGTTTACATTGGATGGAATCGCACCCGGTTCCTGATCCCCACCCACTACCTCAACTTTCCGATCTTCGCGGCTCTTCTTCGCAAATCTGGGGAGGAATTCGGGTTCAAGGCCAACGGAGGCATAGTGTTGCCGTGTGATGTTGAGTTCTTCAAAGAGGTCTTGAACTTGCTTCGAAAAGATGAGAAAAGGTATGGGAGCCTAGAGGTGCCGGAGTTCTTGAAGATGGTTTCTGAGGTTCGTAATTTTGATTATTCCTATACGATGTGCAGCAAGGAAGATAGCGATAGTTGCGATCATCATCAGGGATACTTAAGACCTTTGCTGCAAAAAGCTAGGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

156

Amino Acids

17.75

Weight (kDa)

9.49

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 26 - 99 2.9e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016896)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g36840
malus_domestica MD09G1166400.v1.1
prunus_persica Prupe.3G024100_v2.0.a1
pyrus_communis pycom09g08390
rosa_chinensis RchiOBHm_Chr2g0149231
rosa_laevigata RLG00000020385
rosa_multiflora Rmu_sc0001615.1_g000006
rosa_roxburghii Rroxscaffold_2G00098290
rosa_rugosa Rorug02G0410000
rosa_samantha Rh2AG470500 Rh2BG482700 Rh2CG456400 Rh2DG491800
rosa_wichuraiana Rw2G038260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 331
AccII CGCG 1 cut(s) 194
AciI CCGC 1 cut(s) 194
AclWI GGATC 1 cut(s) 154
AcsI RAATTY 1 cut(s) 221
AflII CTTAAG 1 cut(s) 436
AgsI TTSAA 4 cut(s) 232, 277, 289, 346
AloI GAACNNNNNNTCC 2 cut(s) 212, 244
AluBI AGCT 2 cut(s) 67, 458
AluI AGCT 2 cut(s) 67, 458
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 1 cut(s) 154
AoxI GGCC 3 cut(s) 75, 234, 462
ApeKI GCWGC 2 cut(s) 393, 448
ApoI RAATTY 1 cut(s) 221
Asp700I GAANNNNTTC 1 cut(s) 97
AspS9I GGNCC 1 cut(s) 462
AsuC2I CCSGG 1 cut(s) 151
AsuII TTCGAA 1 cut(s) 298
AxyI CCTNAGG 1 cut(s) 112
BanI GGYRCC 1 cut(s) 331
BbvI GCAGC 2 cut(s) 405, 435
BccI CCATC 2 cut(s) 132, 343
BceAI ACGGC 1 cut(s) 241
BciVI GTATCC 1 cut(s) 425
BcnI CCSGG 1 cut(s) 151
BcoDI GTCTC 1 cut(s) 89
BfaI CTAG 2 cut(s) 326, 459
BfrI CTTAAG 1 cut(s) 436
BfuI GTATCC 1 cut(s) 425
BisI GCNGC 3 cut(s) 195, 394, 449
BlsI GCNGC 3 cut(s) 196, 395, 450
Bme1390I CCNGG 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 462
BmiI GGNNCC 3 cut(s) 155, 323, 333
BmrFI CCNGG 1 cut(s) 151
Bpu14I TTCGAA 1 cut(s) 298
BpuMI CCSGG 1 cut(s) 151
BsaBI GATNNNNATC 1 cut(s) 423
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bse118I RCCGGY 1 cut(s) 37
Bse21I CCTNAGG 1 cut(s) 112
Bse8I GATNNNNATC 1 cut(s) 423
BseGI GGATG 1 cut(s) 143
BseJI GATNNNNATC 1 cut(s) 423
BseMII CTCAG 2 cut(s) 126, 348
BseXI GCAGC 2 cut(s) 405, 435
BsgI GTGCAG 1 cut(s) 412
Bsh1236I CGCG 1 cut(s) 194
BshFI GGCC 3 cut(s) 77, 236, 464
BshNI GGYRCC 1 cut(s) 331
BsiSI CCGG 3 cut(s) 38, 151, 335
BsmAI GTCTC 1 cut(s) 89
BsnI GGCC 3 cut(s) 77, 236, 464
Bsp119I TTCGAA 1 cut(s) 298
Bsp143I GATC 3 cut(s) 159, 186, 418
BspACI CCGC 1 cut(s) 194
BspANI GGCC 3 cut(s) 77, 236, 464
BspCNI CTCAG 2 cut(s) 125, 349
BspFNI CGCG 1 cut(s) 194
BspLI GGNNCC 3 cut(s) 155, 323, 333
BspPI GGATC 1 cut(s) 154
BspQI GCTCTTC 1 cut(s) 204
BspT104I TTCGAA 1 cut(s) 298
BspT107I GGYRCC 1 cut(s) 331
BspTI CTTAAG 1 cut(s) 436
BsrFI RCCGGY 1 cut(s) 37
BssAI RCCGGY 1 cut(s) 37
BssMI GATC 3 cut(s) 159, 186, 418
Bst6I CTCTTC 1 cut(s) 204
BstAFI CTTAAG 1 cut(s) 436
BstBI TTCGAA 1 cut(s) 298
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 2 cut(s) 112, 357
BstF5I GGATG 1 cut(s) 143
BstFNI CGCG 1 cut(s) 194
BstKTI GATC 3 cut(s) 162, 189, 421
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 3 cut(s) 159, 186, 418
BstMWI GCNNNNNNNGC 1 cut(s) 414
BstSCI CCNGG 1 cut(s) 149
BstUI CGCG 1 cut(s) 194
BstV1I GCAGC 2 cut(s) 405, 435
Bsu36I CCTNAGG 1 cut(s) 112
BsuI GTATCC 1 cut(s) 425
BsuRI GGCC 3 cut(s) 77, 236, 464
BtsCI GGATG 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 39
Cfr10I RCCGGY 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 462
CviAII CATG 1 cut(s) 34
CviJI RGCY 7 cut(s) 67, 77, 197, 236, 324, 458, 464
CviKI_1 RGCY 7 cut(s) 67, 77, 197, 236, 324, 458, 464
DdeI CTNAG 2 cut(s) 112, 357
DpnI GATC 3 cut(s) 161, 188, 420
DpnII GATC 3 cut(s) 159, 186, 418
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco81I CCTNAGG 1 cut(s) 112
EcoO109I RGGNCCY 1 cut(s) 462
EcoRI GAATTC 1 cut(s) 221
FaeI CATG 1 cut(s) 37
FaiI YATR 5 cut(s) 35, 80, 248, 318, 384
FatI CATG 1 cut(s) 33
Fnu4HI GCNGC 3 cut(s) 195, 394, 449
FokI GGATG 1 cut(s) 150
Fsp4HI GCNGC 3 cut(s) 195, 394, 449
FspBI CTAG 2 cut(s) 326, 459
GluI GCNGC 3 cut(s) 195, 394, 449
HaeIII GGCC 3 cut(s) 77, 236, 464
HapII CCGG 3 cut(s) 38, 151, 335
Hin1II CATG 1 cut(s) 37
HindIII AAGCTT 1 cut(s) 65
HinfI GANTC 1 cut(s) 142
HpaII CCGG 3 cut(s) 38, 151, 335
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 2 cut(s) 186, 358
Hpy188III TCNNGA 3 cut(s) 157, 286, 343
Hpy8I GTNNAC 1 cut(s) 130
HpyAV CCTTC 2 cut(s) 67, 131
HpyCH4V TGCA 2 cut(s) 393, 451
HpyF10VI GCNNNNNNNGC 1 cut(s) 414
HpyF3I CTNAG 2 cut(s) 112, 357
Hsp92II CATG 1 cut(s) 37
KroI GCCGGC 1 cut(s) 37
KroNI GCCGGC 1 cut(s) 39
Kzo9I GATC 3 cut(s) 159, 186, 418
LguI GCTCTTC 1 cut(s) 204
LmnI GCTCC 2 cut(s) 112, 321
LpnPI CCDG 9 cut(s) 51, 99, 117, 138, 164, 170, 198, 348, 413
Lsp1109I GCAGC 2 cut(s) 405, 435
MaeI CTAG 2 cut(s) 326, 459
MalI GATC 3 cut(s) 161, 188, 420
MboI GATC 3 cut(s) 159, 186, 418
MboII GAAGA 7 cut(s) 90, 181, 191, 194, 265, 358, 413
MluCI AATT 2 cut(s) 221, 367
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 7 cut(s) 121, 185, 211, 236, 274, 322, 352
MroNI GCCGGC 1 cut(s) 37
MroXI GAANNNNTTC 1 cut(s) 97
MseI TTAA 1 cut(s) 437
MspCI CTTAAG 1 cut(s) 436
MspI CCGG 3 cut(s) 38, 151, 335
MspR9I CCNGG 1 cut(s) 151
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 414
NaeI GCCGGC 1 cut(s) 39
NciI CCSGG 1 cut(s) 151
NdeII GATC 3 cut(s) 159, 186, 418
NgoMIV GCCGGC 1 cut(s) 37
NlaIII CATG 1 cut(s) 37
NlaIV GGNNCC 3 cut(s) 155, 323, 333
NspV TTCGAA 1 cut(s) 298
PciSI GCTCTTC 1 cut(s) 204
PdiI GCCGGC 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 3 cut(s) 196, 395, 450
PspN4I GGNNCC 3 cut(s) 155, 323, 333
PspPI GGNCC 1 cut(s) 462
SapI GCTCTTC 1 cut(s) 204
SaqAI TTAA 1 cut(s) 437
SatI GCNGC 3 cut(s) 195, 394, 449
Sau3AI GATC 3 cut(s) 159, 186, 418
Sau96I GGNCC 1 cut(s) 462
ScrFI CCNGG 1 cut(s) 151
SetI ASST 9 cut(s) 69, 118, 177, 285, 317, 333, 363, 445, 460
SfuI TTCGAA 1 cut(s) 298
SmlI CTYRAG 1 cut(s) 436
SmoI CTYRAG 1 cut(s) 436
Sse9I AATT 2 cut(s) 221, 367
SsiI CCGC 1 cut(s) 194
SspMI CTAG 2 cut(s) 326, 459
StyD4I CCNGG 1 cut(s) 149
TaqI TCGA 1 cut(s) 298
TasI AATT 2 cut(s) 221, 367
TauI GCSGC 1 cut(s) 197
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 1 cut(s) 437
Tru9I TTAA 1 cut(s) 437
TseI GCWGC 2 cut(s) 393, 448
TspDTI ATGAA 1 cut(s) 77
TspGWI ACGGA 1 cut(s) 255
Vha464I CTTAAG 1 cut(s) 436
XapI RAATTY 1 cut(s) 221
XmnI GAANNNNTTC 1 cut(s) 97
XspI CTAG 2 cut(s) 326, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.