RLG00000020385

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016896
Physical Location & Seq
Reverse (-)
64455987 .. 64456465
479 bp
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UTR
Exon/CDS
Intron
RLM00000020385

Sequence Viewer

Length: 402 bp
ATGGCAACCCCCACAAGCAAAAGTTCCAAAACAATCCGGCAAGCCATCCAACTCAAACAAGTGATGAAGCTCTGGAAGGCCATAAGCGTCAATGGCAAATCCAACCCCACTCCCTCTGGCTTTCTTCCTGTTTATGTTGGATGGTACCGAACTCGGTTCTTGATTCCTACCCGATTCCTCAAATATCCGATATTCGTGGCTCTTCTTGACAAATCCGGAGAGGAATTTGGGTTCAAGATCAGTGGAGGGATAGTGTTGCCATGTGATGTTGAGTTCTTCAAAGAAATACTCAATTTGCTTCAGAAGAATGAGAAGAGGTACGGTGGCTTAGAGCTTGATCAGTTCCTGAAGAAATTTTCTGAGAGAACCTTTGATGGAGAAAGCATAATGGGGCTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

134

Amino Acids

15.18

Weight (kDa)

9.61

Isoelectric Point (pI)

27.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 20 - 100 2.1e-21 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016896)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g36840
malus_domestica MD09G1166400.v1.1
prunus_persica Prupe.3G024100_v2.0.a1
pyrus_communis pycom09g08390
rosa_chinensis RchiOBHm_Chr2g0149231
rosa_laevigata RLG00000020385
rosa_multiflora Rmu_sc0001615.1_g000006
rosa_roxburghii Rroxscaffold_2G00098290
rosa_rugosa Rorug02G0410000
rosa_samantha Rh2AG470500 Rh2BG482700 Rh2CG456400 Rh2DG491800
rosa_wichuraiana Rw2G038260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 144
AccB1I GGYRCC 1 cut(s) 144
AccIII TCCGGA 1 cut(s) 215
AcsI RAATTY 2 cut(s) 224, 353
AcuI CTGAAG 2 cut(s) 284, 368
AfaI GTAC 2 cut(s) 146, 320
AgsI TTSAA 2 cut(s) 235, 280
AloI GAACNNNNNNTCC 2 cut(s) 215, 247
AluBI AGCT 2 cut(s) 70, 334
AluI AGCT 2 cut(s) 70, 334
AlwNI CAGNNNCTG 1 cut(s) 346
Aor13HI TCCGGA 1 cut(s) 215
AoxI GGCC 1 cut(s) 78
ApoI RAATTY 2 cut(s) 224, 353
Asp718I GGTACC 1 cut(s) 144
BanI GGYRCC 1 cut(s) 144
BccI CCATC 3 cut(s) 53, 135, 368
BclI TGATCA 1 cut(s) 337
BmiI GGNNCC 1 cut(s) 146
BsaWI WCCGGW 1 cut(s) 215
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
BseAI TCCGGA 1 cut(s) 215
BseGI GGATG 2 cut(s) 45, 146
BseMII CTCAG 1 cut(s) 351
BshFI GGCC 1 cut(s) 80
BshNI GGYRCC 1 cut(s) 144
BsiSI CCGG 2 cut(s) 37, 216
BsnI GGCC 1 cut(s) 80
Bsp13I TCCGGA 1 cut(s) 215
Bsp143I GATC 2 cut(s) 237, 337
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 352
BspEI TCCGGA 1 cut(s) 215
BspLI GGNNCC 1 cut(s) 146
BspQI GCTCTTC 1 cut(s) 207
BspT107I GGYRCC 1 cut(s) 144
BssMI GATC 2 cut(s) 237, 337
Bst4CI ACNGT 1 cut(s) 323
Bst6I CTCTTC 2 cut(s) 207, 308
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 2 cut(s) 328, 360
BstF5I GGATG 2 cut(s) 45, 146
BstKTI GATC 2 cut(s) 240, 340
BstMBI GATC 2 cut(s) 237, 337
BstMWI GCNNNNNNNGC 1 cut(s) 93
BsuRI GGCC 1 cut(s) 80
BtsCI GGATG 2 cut(s) 45, 146
BtsIMutI CAGTG 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 42
CaiI CAGNNNCTG 1 cut(s) 346
CseI GACGC 1 cut(s) 76
Csp6I GTAC 2 cut(s) 145, 319
CspCI CAANNNNNGTGG 2 cut(s) 223, 258
CviAII CATG 1 cut(s) 261
CviJI RGCY 8 cut(s) 44, 70, 80, 120, 200, 327, 334, 394
CviKI_1 RGCY 8 cut(s) 44, 70, 80, 120, 200, 327, 334, 394
CviQI GTAC 2 cut(s) 145, 319
DdeI CTNAG 2 cut(s) 328, 360
DpnI GATC 2 cut(s) 239, 339
DpnII GATC 2 cut(s) 237, 337
Eam1104I CTCTTC 2 cut(s) 207, 308
EarI CTCTTC 2 cut(s) 207, 308
Eco57I CTGAAG 2 cut(s) 284, 368
FaeI CATG 1 cut(s) 264
FaiI YATR 4 cut(s) 83, 135, 262, 386
FatI CATG 1 cut(s) 260
FbaI TGATCA 1 cut(s) 337
FokI GGATG 2 cut(s) 32, 153
HaeIII GGCC 1 cut(s) 80
HapII CCGG 2 cut(s) 37, 216
HgaI GACGC 1 cut(s) 76
Hin1II CATG 1 cut(s) 264
HinfI GANTC 2 cut(s) 163, 174
HpaII CCGG 2 cut(s) 37, 216
Hpy188I TCNGA 3 cut(s) 189, 303, 361
Hpy188III TCNNGA 6 cut(s) 73, 160, 206, 216, 235, 346
HpyAV CCTTC 1 cut(s) 70
HpyCH4III ACNGT 1 cut(s) 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 93
HpyF3I CTNAG 2 cut(s) 328, 360
Hsp92II CATG 1 cut(s) 264
Kpn2I TCCGGA 1 cut(s) 215
KpnI GGTACC 1 cut(s) 148
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 2 cut(s) 237, 337
LguI GCTCTTC 1 cut(s) 207
LpnPI CCDG 6 cut(s) 50, 58, 102, 141, 229, 359
MalI GATC 2 cut(s) 239, 339
MboI GATC 2 cut(s) 237, 337
MboII GAAGA 6 cut(s) 116, 194, 268, 316, 325, 361
MluCI AATT 3 cut(s) 224, 292, 353
MmeI TCCRAC 3 cut(s) 73, 118, 126
MnlI CCTC 5 cut(s) 124, 188, 214, 239, 309
MroI TCCGGA 1 cut(s) 215
MspI CCGG 2 cut(s) 37, 216
MwoI GCNNNNNNNGC 1 cut(s) 93
NdeII GATC 2 cut(s) 237, 337
NlaIII CATG 1 cut(s) 264
NlaIV GGNNCC 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 207
PfeI GAWTC 2 cut(s) 163, 174
PspN4I GGNNCC 1 cut(s) 146
PstNI CAGNNNCTG 1 cut(s) 346
RsaI GTAC 2 cut(s) 146, 320
RsaNI GTAC 2 cut(s) 145, 319
SapI GCTCTTC 1 cut(s) 207
Sau3AI GATC 2 cut(s) 237, 337
SetI ASST 4 cut(s) 72, 320, 336, 371
Sse9I AATT 3 cut(s) 224, 292, 353
TaaI ACNGT 1 cut(s) 323
TasI AATT 3 cut(s) 224, 292, 353
TfiI GAWTC 2 cut(s) 163, 174
TscAI CASTG 1 cut(s) 247
TspDTI ATGAA 1 cut(s) 80
TspRI CASTG 1 cut(s) 247
XapI RAATTY 2 cut(s) 224, 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.