FvH4_6g37130

Xylosyltransferase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016897
Physical Location & Seq
Forward (+)
29192535 .. 29194466
1932 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g37130.t1

Sequence Viewer

Length: 1284 bp
ATGAGACTATCATCCTCAAACACTTTTACTTGGTGTTCAGGCTTTCCTCTATGGGTTATGGTTCTTGTAGTGACTTCAGTGTTGCTGGGAACACTATCATTAACATCTCAAAGTGTGTTCTGTAGAGTAGGCAATAAGTACCAAATCTCGGCAAGATTCCCATTAAAAGGGAATGGCAACCCTCCTGTCATCGCTTATTGGATTAGCAGTACTAATGGAGAGAAATGTGAGAAAATGCTAAGGCTGTTGAAGGCAATATACCATCCAAGAAACCAGTATCTGCTGCAACTTGATGCCGATTCATCAGGTTATGAAAGAGAGCAGTTGGCTCTTTATGTTCAATCCCAAGGGGTTTTTCGAACCTTCGATAATGTAAACGTCGTTGGACAAAGTTATGGAATCAACCACATGGGATCCTCTTCTCTTGCTGCCACACTTCACGCTGCAGCATTGCTTCTAAAGCTGAGTGCAGACTGGGATTGGTTCATCGCATTGAGCTCTTCTGACTATCCACTCATGCCTCAAGATGATCTGCTCCATGCTTTGACTTCATTGCCAAGGAACCTCAATTTTGTACATTTTACTGACAAGACTGGATGGAAAGAGCAGAAACGTGTCGAAAAAATTGTTCTAGATCCTACTATACATCTTCAGAATAGTACTCCACTCAGTACACTGAACTATTCTTCAAATATAACAAGAGAAATCCCTGATTCTTTCAAGGTATTTGGAGGTTCACCCTGGGGGATACTATCTAGAGATTTCATGGAGTATTGTGTCCAAGGTTGGGACAACTTACCTAGAGAGTTACTGATGTACCTCAGCAATGTGGTTTACCCTCTTGATTATTACTTCCACACAATCATCTGCAACTCACCGGAGTTCCAAAACTCTCTAGTAGACAATGATCTGAGCTTCACAGTTTGGAACTTAACTGCATTCGGCGAAACTCAAGTCCTAAATATGTCACATTATGAACAAATGCTAGCAAGTGAAGCAGCTTTTGCAAGACCATTTCACACAGGCGATCAAGTACTAAACAAGATTGACGAGAGCGTATTGAATCGCTCTTCTAAAGGGTTGGTGCCCGGAGAATGGTGCCTTGGAGAAGGGAGAAGTATGGGGCTGGAGAATTCAGCAGATGATCATGAAGAGCTGTGTTCAACATGGGTTAACATTAACAGTGTCAACCCGGGTTCTCGTGGCATCAGTCTTGCTGCACTATTGACTAATCTTATAGTAGAAGGGAGATTCACAACTAGTCACTGCCAAGAACACTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00532 ko00534 ko01100 map00532 map00534 map01100
Pfam Domains
Protein Families
Branch

Protein Analysis

428

Amino Acids

48.05

Weight (kDa)

5.54

Isoelectric Point (pI)

34.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 64 - 310 4.3e-55 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016897)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g37130
malus_domestica MD09G1161300.v1.1 MD17G1147100.v1.1
prunus_persica Prupe.3G020200_v2.0.a1
pyrus_communis pycom09g07980 pycom17g13980
rosa_chinensis RchiOBHm_Chr2g0149691
rosa_laevigata RLG00000020438
rosa_multiflora Rmu_sc0013937.1_g000003
rosa_roxburghii Rroxscaffold_2G00097790
rosa_rugosa Rorug02G0414700
rosa_samantha Rh2BG486500 Rh2DG495800
rosa_wichuraiana Rw2G038710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1084, 1098
AccI GTMKAC 1 cut(s) 900
AclWI GGATC 3 cut(s) 408, 421, 629
AcsI RAATTY 1 cut(s) 1132
AcuI CTGAAG 2 cut(s) 60, 635
AfaI GTAC 7 cut(s) 140, 211, 576, 661, 673, 818, 1035
AfiI CCNNNNNNNGG 4 cut(s) 148, 167, 787, 1095
AflIII ACRYGT 1 cut(s) 613
AgsI TTSAA 6 cut(s) 250, 341, 690, 721, 1063, 1164
AhlI ACTAGT 1 cut(s) 1259
AjnI CCWGG 1 cut(s) 740
AjuI GAANNNNNNNTTGG 4 cut(s) 339, 371, 1086, 1118
AluBI AGCT 5 cut(s) 463, 498, 915, 1001, 1156
AluI AGCT 5 cut(s) 463, 498, 915, 1001, 1156
Alw21I GWGCWC 1 cut(s) 500
AlwI GGATC 3 cut(s) 408, 421, 629
AlwNI CAGNNNCTG 1 cut(s) 280
Ama87I CYCGRG 1 cut(s) 1192
ApeKI GCWGC 6 cut(s) 283, 428, 443, 446, 998, 1217
ApoI RAATTY 1 cut(s) 1132
ArsI GACNNNNNNTTYG 2 cut(s) 939, 971
AsuC2I CCSGG 3 cut(s) 1089, 1193, 1194
AsuHPI GGTGA 2 cut(s) 729, 867
AsuII TTCGAA 1 cut(s) 358
AsuNHI GCTAGC 1 cut(s) 985
AvaI CYCGRG 1 cut(s) 1192
BaeGI GKGCMC 1 cut(s) 1089
BaeI ACNNNNGTAYC 2 cut(s) 800, 833
BamHI GGATCC 1 cut(s) 413
BanI GGYRCC 2 cut(s) 1084, 1098
BanII GRGCYC 1 cut(s) 500
BarI GAAGNNNNNNTAC 2 cut(s) 242, 274
BauI CACGAG 1 cut(s) 1200
Bbv12I GWGCWC 1 cut(s) 500
BbvCI CCTCAGC 1 cut(s) 821
BbvI GCAGC 6 cut(s) 270, 415, 430, 458, 1010, 1204
BccI CCATC 2 cut(s) 270, 591
BciT130I CCWGG 1 cut(s) 742
BciVI GTATCC 1 cut(s) 741
BclI TGATCA 1 cut(s) 1144
BcnI CCSGG 3 cut(s) 1089, 1193, 1194
BcuI ACTAGT 1 cut(s) 1259
BfaI CTAG 6 cut(s) 632, 756, 801, 896, 986, 1260
BfmI CTRYAG 2 cut(s) 121, 444
BfuI GTATCC 1 cut(s) 741
BisI GCNGC 6 cut(s) 284, 429, 444, 447, 999, 1218
BlsI GCNGC 6 cut(s) 285, 430, 445, 448, 1000, 1219
BmcAI AGTACT 3 cut(s) 211, 661, 1035
Bme1390I CCNGG 4 cut(s) 742, 1089, 1193, 1194
BmeT110I CYCGRG 1 cut(s) 1192
BmiI GGNNCC 4 cut(s) 415, 563, 1086, 1100
BmrFI CCNGG 4 cut(s) 742, 1089, 1193, 1194
BmrI ACTGGG 1 cut(s) 484
BmsI GCATC 2 cut(s) 283, 1215
BmtI GCTAGC 1 cut(s) 989
BmuI ACTGGG 1 cut(s) 484
BpmI CTGGAG 1 cut(s) 1148
Bpu10I CCTNAGC 2 cut(s) 239, 821
Bpu14I TTCGAA 1 cut(s) 358
BpuEI CTTGAG 2 cut(s) 507, 936
BpuMI CCSGG 3 cut(s) 1089, 1193, 1194
BsaJI CCNNGG 7 cut(s) 346, 557, 740, 741, 781, 1102, 1192
BsaWI WCCGGW 1 cut(s) 877
Bsc4I CCNNNNNNNGG 4 cut(s) 148, 167, 787, 1095
Bse1I ACTGG 4 cut(s) 274, 479, 598, 1283
Bse3DI GCAATG 3 cut(s) 449, 551, 832
BseBI CCWGG 1 cut(s) 742
BseDI CCNNGG 7 cut(s) 346, 557, 740, 741, 781, 1102, 1192
BseGI GGATG 3 cut(s) 11, 262, 602
BseLI CCNNNNNNNGG 4 cut(s) 148, 167, 787, 1095
BseMI GCAATG 3 cut(s) 449, 551, 832
BseMII CTCAG 4 cut(s) 455, 682, 835, 902
BseNI ACTGG 4 cut(s) 274, 479, 598, 1283
BseSI GKGCMC 1 cut(s) 1089
BseXI GCAGC 6 cut(s) 270, 415, 430, 458, 1010, 1204
BseYI CCCAGC 1 cut(s) 85
BsgI GTGCAG 2 cut(s) 489, 1203
BshNI GGYRCC 2 cut(s) 1084, 1098
BsiHKAI GWGCWC 1 cut(s) 500
BsiHKCI CYCGRG 1 cut(s) 1192
BsiSI CCGG 3 cut(s) 878, 1089, 1193
BslFI GGGAC 1 cut(s) 803
BslI CCNNNNNNNGG 4 cut(s) 148, 167, 787, 1095
BsmFI GGGAC 1 cut(s) 803
BsmI GAATGC 1 cut(s) 938
BsoBI CYCGRG 1 cut(s) 1192
Bsp119I TTCGAA 1 cut(s) 358
Bsp1286I GDGCHC 2 cut(s) 500, 1089
Bsp1407I TGTACA 1 cut(s) 574
Bsp143I GATC 6 cut(s) 413, 529, 634, 907, 1027, 1144
BspCNI CTCAG 4 cut(s) 456, 681, 834, 903
BspHI TCATGA 1 cut(s) 1147
BspLI GGNNCC 4 cut(s) 415, 563, 1086, 1100
BspMAI CTGCAG 1 cut(s) 448
BspOI GCTAGC 1 cut(s) 989
BspPI GGATC 3 cut(s) 408, 421, 629
BspQI GCTCTTC 3 cut(s) 505, 1075, 1146
BspT104I TTCGAA 1 cut(s) 358
BspT107I GGYRCC 2 cut(s) 1084, 1098
BsrDI GCAATG 3 cut(s) 449, 551, 832
BsrGI TGTACA 1 cut(s) 574
BsrI ACTGG 4 cut(s) 274, 479, 598, 1283
BssECI CCNNGG 7 cut(s) 346, 557, 740, 741, 781, 1102, 1192
BssMI GATC 6 cut(s) 413, 529, 634, 907, 1027, 1144
BssSI CACGAG 1 cut(s) 1200
BssT1I CCWWGG 4 cut(s) 346, 557, 781, 1102
Bst2BI CACGAG 1 cut(s) 1200
Bst2UI CCWGG 1 cut(s) 742
Bst4CI ACNGT 2 cut(s) 922, 1184
Bst6I CTCTTC 4 cut(s) 424, 505, 1075, 1146
BstAPI GCANNNNNTGC 1 cut(s) 1004
BstAUI TGTACA 1 cut(s) 574
BstBI TTCGAA 1 cut(s) 358
BstC8I GCNNGC 1 cut(s) 987
BstDEI CTNAG 5 cut(s) 239, 464, 668, 821, 911
BstF5I GGATG 3 cut(s) 11, 262, 602
BstKTI GATC 6 cut(s) 416, 532, 637, 910, 1030, 1147
BstMBI GATC 6 cut(s) 413, 529, 634, 907, 1027, 1144
BstMWI GCNNNNNNNGC 3 cut(s) 460, 995, 1004
BstNI CCWGG 1 cut(s) 742
BstSCI CCNGG 4 cut(s) 740, 1087, 1191, 1192
BstSFI CTRYAG 2 cut(s) 121, 444
BstSLI GKGCMC 1 cut(s) 1089
BstV1I GCAGC 6 cut(s) 270, 415, 430, 458, 1010, 1204
BstX2I RGATCY 2 cut(s) 413, 634
BstYI RGATCY 2 cut(s) 413, 634
BsuI GTATCC 1 cut(s) 741
BtgZI GCGATG 2 cut(s) 175, 472
BtsCI GGATG 3 cut(s) 11, 262, 602
BtsI GCAGTG 1 cut(s) 1264
BtsIMutI CAGTG 5 cut(s) 84, 674, 1189, 1264, 1276
Cac8I GCNNGC 1 cut(s) 987
CaiI CAGNNNCTG 1 cut(s) 280
CciI TCATGA 1 cut(s) 1147
Cfr9I CCCGGG 1 cut(s) 1192
Csp6I GTAC 7 cut(s) 139, 210, 575, 660, 672, 817, 1034
CviAII CATG 6 cut(s) 409, 517, 539, 766, 1148, 1167
CviJI RGCY 9 cut(s) 42, 244, 329, 463, 498, 915, 1001, 1126, 1156
CviKI_1 RGCY 9 cut(s) 42, 244, 329, 463, 498, 915, 1001, 1126, 1156
CviQI GTAC 7 cut(s) 139, 210, 575, 660, 672, 817, 1034
DdeI CTNAG 5 cut(s) 239, 464, 668, 821, 911
DpnI GATC 6 cut(s) 415, 531, 636, 909, 1029, 1146
DpnII GATC 6 cut(s) 413, 529, 634, 907, 1027, 1144
Eam1104I CTCTTC 4 cut(s) 424, 505, 1075, 1146
EarI CTCTTC 4 cut(s) 424, 505, 1075, 1146
Ecl136II GAGCTC 1 cut(s) 498
Eco130I CCWWGG 4 cut(s) 346, 557, 781, 1102
Eco24I GRGCYC 1 cut(s) 500
Eco53kI GAGCTC 1 cut(s) 498
Eco57I CTGAAG 2 cut(s) 60, 635
Eco88I CYCGRG 1 cut(s) 1192
EcoICRI GAGCTC 1 cut(s) 498
EcoRI GAATTC 1 cut(s) 1132
EcoRII CCWGG 1 cut(s) 740
EcoT14I CCWWGG 4 cut(s) 346, 557, 781, 1102
EcoT38I GRGCYC 1 cut(s) 500
ErhI CCWWGG 4 cut(s) 346, 557, 781, 1102
FaeI CATG 6 cut(s) 412, 520, 542, 769, 1151, 1170
FaqI GGGAC 1 cut(s) 803
FatI CATG 6 cut(s) 408, 516, 538, 765, 1147, 1166
FbaI TGATCA 1 cut(s) 1144
FblI GTMKAC 1 cut(s) 900
Fnu4HI GCNGC 6 cut(s) 284, 429, 444, 447, 999, 1218
FokI GGATG 2 cut(s) 249, 609
FriOI GRGCYC 1 cut(s) 500
Fsp4HI GCNGC 6 cut(s) 284, 429, 444, 447, 999, 1218
FspBI CTAG 6 cut(s) 632, 756, 801, 896, 986, 1260
GluI GCNGC 6 cut(s) 284, 429, 444, 447, 999, 1218
GsaI CCCAGC 1 cut(s) 89
GsuI CTGGAG 1 cut(s) 1148
HapII CCGG 3 cut(s) 878, 1089, 1193
Hin1II CATG 6 cut(s) 412, 520, 542, 769, 1151, 1170
HincII GTYRAC 2 cut(s) 1174, 1189
HindII GTYRAC 2 cut(s) 1174, 1189
HinfI GANTC 6 cut(s) 156, 299, 399, 713, 1063, 1251
HpaI GTTAAC 1 cut(s) 1174
HpaII CCGG 3 cut(s) 878, 1089, 1193
HphI GGTGA 2 cut(s) 729, 867
Hpy166II GTNNAC 7 cut(s) 376, 674, 737, 835, 901, 1174, 1189
Hpy188I TCNGA 3 cut(s) 505, 654, 912
Hpy188III TCNNGA 5 cut(s) 524, 632, 756, 842, 1148
Hpy8I GTNNAC 7 cut(s) 376, 674, 737, 835, 901, 1174, 1189
Hpy99I CGWCG 1 cut(s) 383
HpyAV CCTTC 4 cut(s) 244, 373, 1103, 1238
HpyCH4III ACNGT 2 cut(s) 922, 1184
HpyCH4IV ACGT 2 cut(s) 378, 613
HpyCH4V TGCA 7 cut(s) 286, 446, 470, 870, 938, 1007, 1220
HpyF10VI GCNNNNNNNGC 3 cut(s) 460, 995, 1004
HpyF3I CTNAG 5 cut(s) 239, 464, 668, 821, 911
HpySE526I ACGT 2 cut(s) 378, 613
Hsp92II CATG 6 cut(s) 412, 520, 542, 769, 1151, 1170
Ksp22I TGATCA 1 cut(s) 1144
KspAI GTTAAC 1 cut(s) 1174
Kzo9I GATC 6 cut(s) 413, 529, 634, 907, 1027, 1144
LguI GCTCTTC 3 cut(s) 505, 1075, 1146
LmnI GCTCC 1 cut(s) 540
Lsp1109I GCAGC 6 cut(s) 270, 415, 430, 458, 1010, 1204
LweI GCATC 2 cut(s) 283, 1215
MaeI CTAG 6 cut(s) 632, 756, 801, 896, 986, 1260
MaeII ACGT 2 cut(s) 378, 613
MaeIII GTNAC 4 cut(s) 70, 807, 966, 1262
MalI GATC 6 cut(s) 415, 531, 636, 909, 1029, 1146
MboI GATC 6 cut(s) 413, 529, 634, 907, 1027, 1144
MboII GAAGA 6 cut(s) 411, 492, 641, 678, 1062, 1163
MflI RGATCY 2 cut(s) 413, 634
MhlI GDGCHC 2 cut(s) 500, 1089
MluCI AATT 3 cut(s) 568, 624, 1132
MmeI TCCRAC 1 cut(s) 364
MnlI CCTC 9 cut(s) 25, 57, 192, 427, 531, 575, 725, 830, 849
MseI TTAA 5 cut(s) 101, 164, 932, 1173, 1179
MspI CCGG 3 cut(s) 878, 1089, 1193
MspR9I CCNGG 4 cut(s) 742, 1089, 1193, 1194
Mva1269I GAATGC 1 cut(s) 938
MvaI CCWGG 1 cut(s) 742
MwoI GCNNNNNNNGC 3 cut(s) 460, 995, 1004
NciI CCSGG 3 cut(s) 1089, 1193, 1194
NdeII GATC 6 cut(s) 413, 529, 634, 907, 1027, 1144
NheI GCTAGC 1 cut(s) 985
NlaIII CATG 6 cut(s) 412, 520, 542, 769, 1151, 1170
NlaIV GGNNCC 4 cut(s) 415, 563, 1086, 1100
NmeAIII GCCGAG 1 cut(s) 128
NmuCI GTSAC 3 cut(s) 70, 966, 1262
NspV TTCGAA 1 cut(s) 358
PagI TCATGA 1 cut(s) 1147
PasI CCCWGGG 1 cut(s) 741
PciSI GCTCTTC 3 cut(s) 505, 1075, 1146
PctI GAATGC 1 cut(s) 938
PfeI GAWTC 6 cut(s) 156, 299, 399, 713, 1063, 1251
PkrI GCNGC 6 cut(s) 285, 430, 445, 448, 1000, 1219
Psp124BI GAGCTC 1 cut(s) 500
Psp6I CCWGG 1 cut(s) 740
PspFI CCCAGC 1 cut(s) 85
PspGI CCWGG 1 cut(s) 740
PspN4I GGNNCC 4 cut(s) 415, 563, 1086, 1100
PstI CTGCAG 1 cut(s) 448
PstNI CAGNNNCTG 1 cut(s) 280
PsuI RGATCY 2 cut(s) 413, 634
RsaI GTAC 7 cut(s) 140, 211, 576, 661, 673, 818, 1035
RsaNI GTAC 7 cut(s) 139, 210, 575, 660, 672, 817, 1034
SacI GAGCTC 1 cut(s) 500
SapI GCTCTTC 3 cut(s) 505, 1075, 1146
SaqAI TTAA 5 cut(s) 101, 164, 932, 1173, 1179
SatI GCNGC 6 cut(s) 284, 429, 444, 447, 999, 1218
Sau3AI GATC 6 cut(s) 413, 529, 634, 907, 1027, 1144
ScaI AGTACT 3 cut(s) 211, 661, 1035
ScrFI CCNGG 4 cut(s) 742, 1089, 1193, 1194
SduI GDGCHC 2 cut(s) 500, 1089
SfaNI GCATC 2 cut(s) 283, 1215
SfcI CTRYAG 2 cut(s) 121, 444
SfuI TTCGAA 1 cut(s) 358
SmaI CCCGGG 1 cut(s) 1194
SmlI CTYRAG 2 cut(s) 522, 951
SmoI CTYRAG 2 cut(s) 522, 951
SpeI ACTAGT 1 cut(s) 1259
Sse9I AATT 3 cut(s) 568, 624, 1132
SspMI CTAG 6 cut(s) 632, 756, 801, 896, 986, 1260
SstI GAGCTC 1 cut(s) 500
StyD4I CCNGG 4 cut(s) 740, 1087, 1191, 1192
StyI CCWWGG 4 cut(s) 346, 557, 781, 1102
TaaI ACNGT 2 cut(s) 922, 1184
TaiI ACGT 2 cut(s) 381, 616
TaqI TCGA 3 cut(s) 358, 366, 618
TasI AATT 3 cut(s) 568, 624, 1132
TatI WGTACW 5 cut(s) 209, 574, 659, 671, 1033
TfiI GAWTC 6 cut(s) 156, 299, 399, 713, 1063, 1251
Tru1I TTAA 5 cut(s) 101, 164, 932, 1173, 1179
Tru9I TTAA 5 cut(s) 101, 164, 932, 1173, 1179
TscAI CASTG 5 cut(s) 84, 681, 1189, 1271, 1283
TseFI GTSAC 3 cut(s) 70, 966, 1262
TseI GCWGC 6 cut(s) 283, 428, 443, 446, 998, 1217
Tsp45I GTSAC 3 cut(s) 70, 966, 1262
TspDTI ATGAA 7 cut(s) 291, 327, 475, 540, 754, 990, 1164
TspMI CCCGGG 1 cut(s) 1192
TspRI CASTG 5 cut(s) 84, 681, 1189, 1271, 1283
XapI RAATTY 1 cut(s) 1132
XbaI TCTAGA 2 cut(s) 631, 755
XmaI CCCGGG 1 cut(s) 1192
XmiI GTMKAC 1 cut(s) 900
XspI CTAG 6 cut(s) 632, 756, 801, 896, 986, 1260
ZrmI AGTACT 3 cut(s) 211, 661, 1035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.