Prupe.3G020200_v2.0.a1

Xylosyltransferase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0016897
Physical Location & Seq
Reverse (-)
1476572 .. 1479198
2627 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G020200.1

Sequence Viewer

Length: 1257 bp
ATGAGAGTATCAAACACTTTTGGATGGTTCTCGGGTTGTCATCTATGGCTTCTTGCATTTGCAGCTTGTTTAGTGTTGTTGGGAGCTTTATCAAGATCATCTCACAAAGTGTTTTCTATGGAGGGCAGCAAGTACCAACTTTCAATGAAAACCCCATTAAAAGGGAGTGGCTACCCCCCTGTGTTTGCTTATTGGATATGTGGTACTAATGGAGAAAGTGAGAAAATATTGAGGCTGTTGAAGGCAATATATCATCCAAGAAACCAGTATCTGCTGCAACTTGATGCTGGTTCTTCAGATTATGATAGAGGACAGCTAGCTCTCTATGTTCAATCTGAGAAGGTGTTTCAGGCCTTTGGAAATGTTAATGTTGTTGGAAAAAGTTATGCCCTCAACCAGATGGGGTCTTCTGCTCTTGCTGCCACACTTCATGCTGCAGCATTGCTTCTAAAGCTCAGTGCAGATTGGGACTGGTTCATCACTTTAAGTGCTTCTGACTATCCACTCATCCCTCAGGATGATCTGCTCCATGCTTTCACTTTATTGCCAAGGAATACCAATTTTATACATTTTACAAACAAGACTGGCTGGAAAGAGCAGAAAAATATGGATCGAATCGTTGTAGATCCTAGTTTATATCTTCAGGAGAGCACTCCACTTATGTATGCTGTAGAGAACAGATCCATGCCAGATGCTTTCAAAATATTTGGAGGTTCACCTTGGATGATTTTAACCAGAGATTTCATGGAGTATTGTGTCAAAGGATGGGACAACTTTCCTAGAAAGTTACTGATGTACATCAGCAATGTGCCTTACCCTCTTGAGTCCTACTTCCACACAGTCATCTGCAGCTCCACTGAGTTCCAAAACTCTGTAGTGAACAATGATCTGAGGTACATTGTGTGGGACTCGAATGCGCTCGGGGAATCTCAAGTCCTAAGCATGTCACACTATGATCAAATGCTAGCAAGTGGAGCAGCTTTTGCAAGACCATTTCAAGCAGATGATCCGGTACTAAACAAGATCGATGAGAATGTTTTAAACCGAAGTTCCAAAGGGTTGGTTCCCGGAGAATGGTGCCCTGACCTAGGAATAAGTAAGAGCCTAGAGAATTCAACAGCTCAGGAGGAGTTGTGTCCAGCTTGGGACAACATTAACAGTGTCAAGCCGGGTCCTCGTGGCATTAGTCTTAGAGAACTATTGCCTAAGCTTGCTGTAGAAGGGAGATTTACAACCAGTCACTGCCAAGAACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00532 ko00534 ko01100 map00532 map00534 map01100
Pfam Domains
Protein Families
Branch

Protein Analysis

419

Amino Acids

47.01

Weight (kDa)

6.21

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016897)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g37130
malus_domestica MD09G1161300.v1.1 MD17G1147100.v1.1
prunus_persica Prupe.3G020200_v2.0.a1
pyrus_communis pycom09g07980 pycom17g13980
rosa_chinensis RchiOBHm_Chr2g0149691
rosa_laevigata RLG00000020438
rosa_multiflora Rmu_sc0013937.1_g000003
rosa_roxburghii Rroxscaffold_2G00097790
rosa_rugosa Rorug02G0414700
rosa_samantha Rh2BG486500 Rh2DG495800
rosa_wichuraiana Rw2G038710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1077
AclWI GGATC 4 cut(s) 618, 620, 675, 1001
AcsI RAATTY 1 cut(s) 1111
AcuI CTGAAG 2 cut(s) 279, 626
AdeI CACNNNGTG 1 cut(s) 109
AfaI GTAC 5 cut(s) 134, 205, 797, 896, 1014
AfiI CCNNNNNNNGG 3 cut(s) 161, 1074, 1088
AgsI TTSAA 6 cut(s) 144, 241, 332, 700, 998, 1116
Alw21I GWGCWC 1 cut(s) 653
AlwI GGATC 4 cut(s) 618, 620, 675, 1001
AlwNI CAGNNNCTG 2 cut(s) 271, 1242
Ama87I CYCGRG 2 cut(s) 31, 920
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 8 cut(s) 62, 126, 274, 419, 434, 437, 849, 977
ApoI RAATTY 1 cut(s) 1111
AspA2I CCTAGG 1 cut(s) 1087
AspLEI GCGC 1 cut(s) 919
AspS9I GGNCC 1 cut(s) 1172
AsuC2I CCSGG 2 cut(s) 1068, 1170
AsuHPI GGTGA 1 cut(s) 708
AsuNHI GCTAGC 2 cut(s) 316, 964
AvaI CYCGRG 2 cut(s) 31, 920
AvaII GGWCC 1 cut(s) 1172
AvrII CCTAGG 1 cut(s) 1087
AxyI CCTNAGG 1 cut(s) 513
BaeGI GKGCMC 1 cut(s) 1082
BanI GGYRCC 1 cut(s) 1077
BauI CACGAG 1 cut(s) 1176
BbsI GAAGAC 1 cut(s) 399
Bbv12I GWGCWC 1 cut(s) 653
BbvI GCAGC 8 cut(s) 74, 138, 261, 406, 421, 449, 861, 989
BccI CCATC 3 cut(s) 18, 394, 759
BclI TGATCA 1 cut(s) 955
BcnI CCSGG 2 cut(s) 1068, 1170
BfaI CTAG 6 cut(s) 317, 630, 780, 965, 1088, 1106
BfmI CTRYAG 5 cut(s) 435, 669, 847, 873, 1215
BisI GCNGC 8 cut(s) 63, 127, 275, 420, 435, 438, 850, 978
BlnI CCTAGG 1 cut(s) 1087
BlsI GCNGC 8 cut(s) 64, 128, 276, 421, 436, 439, 851, 979
Bme1390I CCNGG 2 cut(s) 1068, 1170
Bme18I GGWCC 1 cut(s) 1172
BmeT110I CYCGRG 2 cut(s) 31, 920
BmgT120I GGNCC 1 cut(s) 1172
BmiI GGNNCC 3 cut(s) 1065, 1079, 1173
BmrFI CCNGG 2 cut(s) 1068, 1170
BmsI GCATC 2 cut(s) 274, 682
BmtI GCTAGC 2 cut(s) 320, 968
BpiI GAAGAC 1 cut(s) 399
Bpu10I CCTNAGC 3 cut(s) 938, 1122, 1206
BpuEI CTTGAG 2 cut(s) 842, 915
BpuMI CCSGG 2 cut(s) 1068, 1170
Bsa29I ATCGAT 1 cut(s) 1026
BsaBI GATNNNNATC 1 cut(s) 797
BsaJI CCNNGG 3 cut(s) 548, 719, 1087
BsaWI WCCGGW 1 cut(s) 1009
BsaXI ACNNNNNCTCC 2 cut(s) 1118, 1148
Bsc4I CCNNNNNNNGG 3 cut(s) 161, 1074, 1088
Bse1I ACTGG 4 cut(s) 265, 476, 589, 1236
Bse21I CCTNAGG 1 cut(s) 513
Bse3DI GCAATG 2 cut(s) 440, 811
Bse8I GATNNNNATC 1 cut(s) 797
BseCI ATCGAT 1 cut(s) 1026
BseDI CCNNGG 3 cut(s) 548, 719, 1087
BseGI GGATG 6 cut(s) 29, 253, 507, 523, 729, 770
BseJI GATNNNNATC 1 cut(s) 797
BseLI CCNNNNNNNGG 3 cut(s) 161, 1074, 1088
BseMI GCAATG 2 cut(s) 440, 811
BseMII CTCAG 6 cut(s) 327, 469, 527, 849, 881, 1136
BseNI ACTGG 4 cut(s) 265, 476, 589, 1236
BseRI GAGGAG 1 cut(s) 1142
BseSI GKGCMC 1 cut(s) 1082
BseXI GCAGC 8 cut(s) 74, 138, 261, 406, 421, 449, 861, 989
BsgI GTGCAG 1 cut(s) 480
BshFI GGCC 1 cut(s) 353
BshNI GGYRCC 1 cut(s) 1077
BshVI ATCGAT 1 cut(s) 1026
BsiHKAI GWGCWC 1 cut(s) 653
BsiHKCI CYCGRG 2 cut(s) 31, 920
BsiSI CCGG 3 cut(s) 1010, 1068, 1169
BslFI GGGAC 4 cut(s) 482, 782, 920, 1160
BslI CCNNNNNNNGG 3 cut(s) 161, 1074, 1088
BsmFI GGGAC 4 cut(s) 482, 782, 920, 1160
BsmI GAATGC 1 cut(s) 919
BsnI GGCC 1 cut(s) 353
BsoBI CYCGRG 2 cut(s) 31, 920
Bsp1286I GDGCHC 2 cut(s) 653, 1082
Bsp1407I TGTACA 1 cut(s) 795
Bsp143I GATC 9 cut(s) 95, 520, 610, 625, 680, 886, 955, 1006, 1023
BspANI GGCC 1 cut(s) 353
BspCNI CTCAG 6 cut(s) 328, 468, 526, 850, 882, 1135
BspDI ATCGAT 1 cut(s) 1026
BspLI GGNNCC 3 cut(s) 1065, 1079, 1173
BspMAI CTGCAG 2 cut(s) 439, 851
BspOI GCTAGC 2 cut(s) 320, 968
BspPI GGATC 4 cut(s) 618, 620, 675, 1001
BspT107I GGYRCC 1 cut(s) 1077
BsrDI GCAATG 2 cut(s) 440, 811
BsrGI TGTACA 1 cut(s) 795
BsrI ACTGG 4 cut(s) 265, 476, 589, 1236
BssECI CCNNGG 3 cut(s) 548, 719, 1087
BssMI GATC 9 cut(s) 95, 520, 610, 625, 680, 886, 955, 1006, 1023
BssSI CACGAG 1 cut(s) 1176
BssT1I CCWWGG 3 cut(s) 548, 719, 1087
Bst2BI CACGAG 1 cut(s) 1176
Bst4CI ACNGT 2 cut(s) 841, 1160
BstAPI GCANNNNNTGC 1 cut(s) 983
BstAUI TGTACA 1 cut(s) 795
BstC8I GCNNGC 3 cut(s) 318, 966, 1212
BstDEI CTNAG 9 cut(s) 336, 455, 513, 858, 890, 938, 1122, 1190, 1206
BstENI CCTNNNNNAGG 1 cut(s) 1086
BstF5I GGATG 6 cut(s) 29, 253, 507, 523, 729, 770
BstHHI GCGC 1 cut(s) 919
BstKTI GATC 9 cut(s) 98, 523, 613, 628, 683, 889, 958, 1009, 1026
BstMBI GATC 9 cut(s) 95, 520, 610, 625, 680, 886, 955, 1006, 1023
BstMWI GCNNNNNNNGC 5 cut(s) 62, 419, 451, 974, 983
BstNSI RCATGY 1 cut(s) 946
BstSCI CCNGG 2 cut(s) 1066, 1168
BstSFI CTRYAG 5 cut(s) 435, 669, 847, 873, 1215
BstSLI GKGCMC 1 cut(s) 1082
BstV1I GCAGC 8 cut(s) 74, 138, 261, 406, 421, 449, 861, 989
BstV2I GAAGAC 1 cut(s) 399
BstX2I RGATCY 2 cut(s) 625, 680
BstXI CCANNNNNNTGG 1 cut(s) 1060
BstYI RGATCY 2 cut(s) 625, 680
Bsu15I ATCGAT 1 cut(s) 1026
Bsu36I CCTNAGG 1 cut(s) 513
BsuRI GGCC 1 cut(s) 353
BsuTUI ATCGAT 1 cut(s) 1026
BtsCI GGATG 6 cut(s) 29, 253, 507, 523, 729, 770
BtsI GCAGTG 1 cut(s) 1240
BtsIMutI CAGTG 5 cut(s) 463, 855, 1165, 1240, 1252
Cac8I GCNNGC 3 cut(s) 318, 966, 1212
CaiI CAGNNNCTG 2 cut(s) 271, 1242
CfoI GCGC 1 cut(s) 919
Cfr13I GGNCC 1 cut(s) 1172
ClaI ATCGAT 1 cut(s) 1026
Csp6I GTAC 5 cut(s) 133, 204, 796, 895, 1013
CviAII CATG 5 cut(s) 431, 530, 685, 745, 943
CviQI GTAC 5 cut(s) 133, 204, 796, 895, 1013
DdeI CTNAG 9 cut(s) 336, 455, 513, 858, 890, 938, 1122, 1190, 1206
DpnI GATC 9 cut(s) 97, 522, 612, 627, 682, 888, 957, 1008, 1025
DpnII GATC 9 cut(s) 95, 520, 610, 625, 680, 886, 955, 1006, 1023
DraI TTTAAA 1 cut(s) 1041
DraIII CACNNNGTG 1 cut(s) 109
Eco130I CCWWGG 3 cut(s) 548, 719, 1087
Eco147I AGGCCT 1 cut(s) 353
Eco47I GGWCC 1 cut(s) 1172
Eco57I CTGAAG 2 cut(s) 279, 626
Eco81I CCTNAGG 1 cut(s) 513
Eco88I CYCGRG 2 cut(s) 31, 920
EcoNI CCTNNNNNAGG 1 cut(s) 1086
EcoO109I RGGNCCY 1 cut(s) 1172
EcoRI GAATTC 1 cut(s) 1111
EcoT14I CCWWGG 3 cut(s) 548, 719, 1087
ErhI CCWWGG 3 cut(s) 548, 719, 1087
FaeI CATG 5 cut(s) 434, 533, 688, 748, 946
FaqI GGGAC 4 cut(s) 482, 782, 920, 1160
FatI CATG 5 cut(s) 430, 529, 684, 744, 942
FbaI TGATCA 1 cut(s) 955
Fnu4HI GCNGC 8 cut(s) 63, 127, 275, 420, 435, 438, 850, 978
FokI GGATG 6 cut(s) 36, 240, 494, 530, 736, 777
Fsp4HI GCNGC 8 cut(s) 63, 127, 275, 420, 435, 438, 850, 978
FspBI CTAG 6 cut(s) 317, 630, 780, 965, 1088, 1106
GlaI GCGC 1 cut(s) 918
GluI GCNGC 8 cut(s) 63, 127, 275, 420, 435, 438, 850, 978
HaeIII GGCC 1 cut(s) 353
HapII CCGG 3 cut(s) 1010, 1068, 1169
HhaI GCGC 1 cut(s) 919
Hin1II CATG 5 cut(s) 434, 533, 688, 748, 946
Hin6I GCGC 1 cut(s) 917
HinP1I GCGC 1 cut(s) 917
HindIII AAGCTT 1 cut(s) 1208
HinfI GANTC 4 cut(s) 615, 824, 908, 926
HpaII CCGG 3 cut(s) 1010, 1068, 1169
HphI GGTGA 1 cut(s) 708
Hpy166II GTNNAC 2 cut(s) 716, 880
Hpy188I TCNGA 4 cut(s) 298, 337, 496, 891
Hpy188III TCNNGA 5 cut(s) 93, 515, 644, 821, 1124
Hpy8I GTNNAC 2 cut(s) 716, 880
HpyAV CCTTC 3 cut(s) 235, 334, 1214
HpyCH4III ACNGT 2 cut(s) 841, 1160
HpyCH4V TGCA 7 cut(s) 56, 62, 277, 437, 461, 849, 986
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 419, 451, 974, 983
HpyF3I CTNAG 9 cut(s) 336, 455, 513, 858, 890, 938, 1122, 1190, 1206
Hsp92II CATG 5 cut(s) 434, 533, 688, 748, 946
HspAI GCGC 1 cut(s) 917
Ksp22I TGATCA 1 cut(s) 955
Kzo9I GATC 9 cut(s) 95, 520, 610, 625, 680, 886, 955, 1006, 1023
LmnI GCTCC 4 cut(s) 83, 531, 857, 974
Lsp1109I GCAGC 8 cut(s) 74, 138, 261, 406, 421, 449, 861, 989
LweI GCATC 2 cut(s) 274, 682
MaeI CTAG 6 cut(s) 317, 630, 780, 965, 1088, 1106
MaeIII GTNAC 3 cut(s) 786, 945, 1238
MalI GATC 9 cut(s) 97, 522, 612, 627, 682, 888, 957, 1008, 1025
MboI GATC 9 cut(s) 95, 520, 610, 625, 680, 886, 955, 1006, 1023
MboII GAAGA 3 cut(s) 285, 399, 632
MflI RGATCY 2 cut(s) 625, 680
MhlI GDGCHC 2 cut(s) 653, 1082
MluCI AATT 2 cut(s) 559, 1111
MlyI GAGTC 2 cut(s) 833, 902
MmeI TCCRAC 1 cut(s) 355
MseI TTAA 6 cut(s) 158, 366, 485, 731, 1040, 1155
MspI CCGG 3 cut(s) 1010, 1068, 1169
MspR9I CCNGG 2 cut(s) 1068, 1170
Mva1269I GAATGC 1 cut(s) 919
MwoI GCNNNNNNNGC 5 cut(s) 62, 419, 451, 974, 983
NciI CCSGG 2 cut(s) 1068, 1170
NdeII GATC 9 cut(s) 95, 520, 610, 625, 680, 886, 955, 1006, 1023
NheI GCTAGC 2 cut(s) 316, 964
NlaIII CATG 5 cut(s) 434, 533, 688, 748, 946
NlaIV GGNNCC 3 cut(s) 1065, 1079, 1173
NmuCI GTSAC 2 cut(s) 945, 1238
NspI RCATGY 1 cut(s) 946
PceI AGGCCT 1 cut(s) 353
PctI GAATGC 1 cut(s) 919
PfeI GAWTC 2 cut(s) 615, 926
PfoI TCCNGGA 1 cut(s) 1066
PkrI GCNGC 8 cut(s) 64, 128, 276, 421, 436, 439, 851, 979
PleI GAGTC 2 cut(s) 832, 902
PpsI GAGTC 2 cut(s) 832, 902
PpuMI RGGWCCY 1 cut(s) 1172
Psp5II RGGWCCY 1 cut(s) 1172
PspN4I GGNNCC 3 cut(s) 1065, 1079, 1173
PspPI GGNCC 1 cut(s) 1172
PspPPI RGGWCCY 1 cut(s) 1172
PstI CTGCAG 2 cut(s) 439, 851
PstNI CAGNNNCTG 2 cut(s) 271, 1242
PsuI RGATCY 2 cut(s) 625, 680
RsaI GTAC 5 cut(s) 134, 205, 797, 896, 1014
RsaNI GTAC 5 cut(s) 133, 204, 796, 895, 1013
SaqAI TTAA 6 cut(s) 158, 366, 485, 731, 1040, 1155
SatI GCNGC 8 cut(s) 63, 127, 275, 420, 435, 438, 850, 978
Sau3AI GATC 9 cut(s) 95, 520, 610, 625, 680, 886, 955, 1006, 1023
Sau96I GGNCC 1 cut(s) 1172
SchI GAGTC 2 cut(s) 833, 902
ScrFI CCNGG 2 cut(s) 1068, 1170
SduI GDGCHC 2 cut(s) 653, 1082
SfaNI GCATC 2 cut(s) 274, 682
SfcI CTRYAG 5 cut(s) 435, 669, 847, 873, 1215
SinI GGWCC 1 cut(s) 1172
SmlI CTYRAG 2 cut(s) 821, 930
SmoI CTYRAG 2 cut(s) 821, 930
Sse9I AATT 2 cut(s) 559, 1111
SseBI AGGCCT 1 cut(s) 353
SspI AATATT 2 cut(s) 228, 705
SspMI CTAG 6 cut(s) 317, 630, 780, 965, 1088, 1106
StuI AGGCCT 1 cut(s) 353
StyD4I CCNGG 2 cut(s) 1066, 1168
StyI CCWWGG 3 cut(s) 548, 719, 1087
TaaI ACNGT 2 cut(s) 841, 1160
TaqI TCGA 3 cut(s) 613, 911, 1026
TasI AATT 2 cut(s) 559, 1111
TatI WGTACW 1 cut(s) 795
TfiI GAWTC 2 cut(s) 615, 926
Tru1I TTAA 6 cut(s) 158, 366, 485, 731, 1040, 1155
Tru9I TTAA 6 cut(s) 158, 366, 485, 731, 1040, 1155
TscAI CASTG 4 cut(s) 463, 862, 1165, 1247
TseFI GTSAC 2 cut(s) 945, 1238
TseI GCWGC 8 cut(s) 62, 126, 274, 419, 434, 437, 849, 977
Tsp45I GTSAC 2 cut(s) 945, 1238
TspDTI ATGAA 4 cut(s) 161, 419, 466, 733
TspRI CASTG 4 cut(s) 463, 862, 1165, 1247
VpaK11BI GGWCC 1 cut(s) 1172
XagI CCTNNNNNAGG 1 cut(s) 1086
XapI RAATTY 1 cut(s) 1111
XceI RCATGY 1 cut(s) 946
XcmI CCANNNNNNNNNTGG 1 cut(s) 742
XmaJI CCTAGG 1 cut(s) 1087
XspI CTAG 6 cut(s) 317, 630, 780, 965, 1088, 1106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.