pycom09g07980

Xylosyltransferase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0016897
Physical Location & Seq
Reverse (-)
6124391 .. 6126261
1871 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g07980.2

Sequence Viewer

Length: 1158 bp
ATGGTTCTAAAGCTTCCCCCAATGAGAACACCAAACACTTCTTCGTGGTGTTTTGGTTATCGTCTATGGATCGATCTAGCACTTTCGGTTACTTTAGTCCTGCTGGGAGCAATTTCAAGATCATCTCACAATGTGTTTTCTGGATATGGCAACAAAAACCAACTCTCAATGAGAGCGCCACTAAAAGGGAATGGCAACCCCCCAATCTTTGCTTATTGGATATGTGGAACTAAAGGAGACAGTGAGAAGATTTTGAGGCTTTTGAAGGCAATATATCATCCAAGAAATCATTATTTGCTGCAGCTTGATTCGGGTTCATCGGATTATGATAGAGGGCAGCTAGCTCTCTCTGTTCAATCCGAAAGAGTTTTTCGATCTTTCGGAAATGTTTATGTTGTTGGGAAAAGTTATGCTCTCAACCAGATGGGGTCTTCTGCTCTTGCTGCCACACTTAATGCTGCAGCATTGCTTCTAAAGCTCAGTGCAGATTGGGACTGGCATATGGATCGAATCGTCGACGATCCTAGCTTATACCTTCGACATGTTGCTCCTCTTTTGTATATTGTAGAGAACAGAACCATGCCAGATGCTTTCAAAATCTTTGGAGGTTCGCCTTGGACGATTTTAACCCGAGATTTCATTGACTACTGTGTCAAAGGATGGGATAACTTTCCCAGGAAGCTACTGATGTACCTCAGCAATGTGCCCTTCCCTCTTGAATCCTACTTCCACACAATCATCTGCAGCTCACCTGAGTTCCAAAACTCTTTAGTGAACAATGACCTAAGGTACATTATTTGGGACACAAACGCGCTCGGAGAAGCGCAAGTCCTAAACATATCACACTACGATCAAATGCTGGCAAGTGGAGCAGCCTTTGCAAGACCGTTTCGAGCAGATGATGATCCGGTGCTAAAAAAGATCGATGAGAGTGTCCTGAATCGGACTTCAGGAGGGTTGGTTCCGGGCGAATGGTGCCCCGGGATAGGGAGAAGTAAGAGCCTGGAGAGCTCAGCAGCTGGTCTGGAAGAGTTGTGTCCAAGTTGGGGCAACATTAACCATGTCACGCCGGGTCCTCGCGGCGTTAGTCTCCGAGAATTTTTGCCTAAGCTTGCGGTAGAAGGAAGATTTACAATCAGTCACTGCCAAGAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00532 ko00534 ko01100 map00532 map00534 map01100
Pfam Domains
Protein Families
Branch

Protein Analysis

386

Amino Acids

43.04

Weight (kDa)

8.1

Isoelectric Point (pI)

35.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016897)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g37130
malus_domestica MD09G1161300.v1.1 MD17G1147100.v1.1
prunus_persica Prupe.3G020200_v2.0.a1
pyrus_communis pycom09g07980 pycom17g13980
rosa_chinensis RchiOBHm_Chr2g0149691
rosa_laevigata RLG00000020438
rosa_multiflora Rmu_sc0013937.1_g000003
rosa_roxburghii Rroxscaffold_2G00097790
rosa_rugosa Rorug02G0414700
rosa_samantha Rh2BG486500 Rh2DG495800
rosa_wichuraiana Rw2G038710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 650
AccB1I GGYRCC 1 cut(s) 975
AccI GTMKAC 1 cut(s) 516
AccII CGCG 2 cut(s) 812, 1080
AciI CCGC 2 cut(s) 1080, 1115
AclWI GGATC 4 cut(s) 77, 513, 515, 899
AcsI RAATTY 1 cut(s) 1097
AcuI CTGAAG 1 cut(s) 933
AdeI CACNNNGTG 1 cut(s) 133
AfaI GTAC 2 cut(s) 692, 791
AfiI CCNNNNNNNGG 4 cut(s) 185, 986, 987, 1046
AflIII ACRYGT 1 cut(s) 541
AgsI TTSAA 5 cut(s) 117, 265, 356, 595, 719
AjnI CCWGG 2 cut(s) 674, 1002
AjuI GAANNNNNNNTTGG 2 cut(s) 25, 57
AloI GAACNNNNNNTCC 2 cut(s) 945, 977
Alw21I GWGCWC 1 cut(s) 1013
Alw26I GTCTC 2 cut(s) 231, 1094
AlwI GGATC 4 cut(s) 77, 513, 515, 899
AlwNI CAGNNNCTG 2 cut(s) 1019, 1143
Ama87I CYCGRG 2 cut(s) 630, 980
ApeKI GCWGC 9 cut(s) 298, 301, 337, 443, 458, 461, 744, 872, 1016
ApoI RAATTY 1 cut(s) 1097
AspLEI GCGC 3 cut(s) 178, 814, 826
AspS9I GGNCC 1 cut(s) 1073
AsuC2I CCSGG 4 cut(s) 966, 981, 982, 1071
AsuHPI GGTGA 1 cut(s) 741
AsuNHI GCTAGC 1 cut(s) 340
AvaI CYCGRG 2 cut(s) 630, 980
AvaII GGWCC 1 cut(s) 1073
AxyI CCTNAGG 1 cut(s) 785
BaeGI GKGCMC 2 cut(s) 708, 980
BaeI ACNNNNGTAYC 2 cut(s) 674, 707
BanI GGYRCC 1 cut(s) 975
BanII GRGCYC 1 cut(s) 1013
BbsI GAAGAC 1 cut(s) 423
Bbv12I GWGCWC 1 cut(s) 1013
BbvCI CCTCAGC 1 cut(s) 695
BbvI GCAGC 9 cut(s) 285, 313, 349, 430, 445, 473, 756, 884, 1028
BccI CCATC 2 cut(s) 418, 654
BcgI CGANNNNNNTGC 2 cut(s) 488, 522
BciT130I CCWGG 2 cut(s) 676, 1004
BcnI CCSGG 4 cut(s) 966, 981, 982, 1071
BcoDI GTCTC 2 cut(s) 231, 1094
BfaI CTAG 3 cut(s) 77, 341, 525
BfmI CTRYAG 3 cut(s) 299, 459, 742
BfoI RGCGCY 1 cut(s) 179
BlpI GCTNAGC 1 cut(s) 1012
Bme1390I CCNGG 6 cut(s) 676, 966, 981, 982, 1004, 1071
Bme18I GGWCC 1 cut(s) 1073
BmeT110I CYCGRG 2 cut(s) 630, 980
BmgT120I GGNCC 1 cut(s) 1073
BmiI GGNNCC 3 cut(s) 963, 977, 1074
BmrFI CCNGG 6 cut(s) 676, 966, 981, 982, 1004, 1071
BmsI GCATC 1 cut(s) 577
BmtI GCTAGC 1 cut(s) 344
BpiI GAAGAC 1 cut(s) 423
BpmI CTGGAG 1 cut(s) 1025
Bpu10I CCTNAGC 2 cut(s) 695, 1107
Bpu1102I GCTNAGC 1 cut(s) 1012
BpuMI CCSGG 4 cut(s) 966, 981, 982, 1071
Bsa29I ATCGAT 2 cut(s) 72, 924
BsaBI GATNNNNATC 1 cut(s) 903
BsaJI CCNNGG 4 cut(s) 614, 674, 979, 980
BsaWI WCCGGW 1 cut(s) 907
BsaXI ACNNNNNCTCC 2 cut(s) 945, 975
Bsc4I CCNNNNNNNGG 4 cut(s) 185, 986, 987, 1046
Bse1I ACTGG 1 cut(s) 500
Bse21I CCTNAGG 1 cut(s) 785
Bse3DI GCAATG 2 cut(s) 464, 706
Bse8I GATNNNNATC 1 cut(s) 903
BseBI CCWGG 2 cut(s) 676, 1004
BseCI ATCGAT 2 cut(s) 72, 924
BseDI CCNNGG 4 cut(s) 614, 674, 979, 980
BseGI GGATG 2 cut(s) 277, 665
BseJI GATNNNNATC 1 cut(s) 903
BseLI CCNNNNNNNGG 4 cut(s) 185, 986, 987, 1046
BseMI GCAATG 2 cut(s) 464, 706
BseMII CTCAG 4 cut(s) 493, 709, 744, 1026
BseNI ACTGG 1 cut(s) 500
BseRI GAGGAG 1 cut(s) 540
BseSI GKGCMC 2 cut(s) 708, 980
BseXI GCAGC 9 cut(s) 285, 313, 349, 430, 445, 473, 756, 884, 1028
BseYI CCCAGC 1 cut(s) 103
BsgI GTGCAG 1 cut(s) 504
Bsh1236I CGCG 2 cut(s) 812, 1080
BshNI GGYRCC 1 cut(s) 975
BshVI ATCGAT 2 cut(s) 72, 924
BsiHKAI GWGCWC 1 cut(s) 1013
BsiHKCI CYCGRG 2 cut(s) 630, 980
BsiSI CCGG 4 cut(s) 908, 965, 981, 1070
BslFI GGGAC 2 cut(s) 506, 815
BslI CCNNNNNNNGG 4 cut(s) 185, 986, 987, 1046
BsmAI GTCTC 2 cut(s) 231, 1094
BsmFI GGGAC 2 cut(s) 506, 815
BsoBI CYCGRG 2 cut(s) 630, 980
Bsp1286I GDGCHC 3 cut(s) 708, 980, 1013
Bsp143I GATC 9 cut(s) 69, 73, 119, 374, 505, 520, 850, 904, 921
Bsp1720I GCTNAGC 1 cut(s) 1012
BspACI CCGC 2 cut(s) 1080, 1115
BspCNI CTCAG 4 cut(s) 492, 708, 745, 1025
BspDI ATCGAT 2 cut(s) 72, 924
BspFNI CGCG 2 cut(s) 812, 1080
BspLI GGNNCC 3 cut(s) 963, 977, 1074
BspMAI CTGCAG 3 cut(s) 303, 463, 746
BspOI GCTAGC 1 cut(s) 344
BspPI GGATC 4 cut(s) 77, 513, 515, 899
BspT107I GGYRCC 1 cut(s) 975
BsrDI GCAATG 2 cut(s) 464, 706
BsrI ACTGG 1 cut(s) 500
BssECI CCNNGG 4 cut(s) 614, 674, 979, 980
BssMI GATC 9 cut(s) 69, 73, 119, 374, 505, 520, 850, 904, 921
BssT1I CCWWGG 1 cut(s) 614
Bst2UI CCWGG 2 cut(s) 676, 1004
Bst4CI ACNGT 4 cut(s) 242, 650, 888, 1155
Bst6I CTCTTC 1 cut(s) 1023
BstAPI GCANNNNNTGC 1 cut(s) 878
BstC8I GCNNGC 3 cut(s) 342, 861, 1113
BstDEI CTNAG 6 cut(s) 479, 695, 753, 785, 1012, 1107
BstF5I GGATG 2 cut(s) 277, 665
BstFNI CGCG 2 cut(s) 812, 1080
BstH2I RGCGCY 1 cut(s) 179
BstHHI GCGC 3 cut(s) 178, 814, 826
BstKTI GATC 9 cut(s) 72, 76, 122, 377, 508, 523, 853, 907, 924
BstMAI GTCTC 2 cut(s) 231, 1094
BstMBI GATC 9 cut(s) 69, 73, 119, 374, 505, 520, 850, 904, 921
BstMWI GCNNNNNNNGC 6 cut(s) 443, 475, 869, 878, 975, 1008
BstNI CCWGG 2 cut(s) 676, 1004
BstNSI RCATGY 1 cut(s) 545
BstSCI CCNGG 6 cut(s) 674, 964, 979, 980, 1002, 1069
BstSFI CTRYAG 3 cut(s) 299, 459, 742
BstSLI GKGCMC 2 cut(s) 708, 980
BstUI CGCG 2 cut(s) 812, 1080
BstV1I GCAGC 9 cut(s) 285, 313, 349, 430, 445, 473, 756, 884, 1028
BstV2I GAAGAC 1 cut(s) 423
Bsu15I ATCGAT 2 cut(s) 72, 924
Bsu36I CCTNAGG 1 cut(s) 785
BsuTUI ATCGAT 2 cut(s) 72, 924
BtsCI GGATG 2 cut(s) 277, 665
BtsI GCAGTG 1 cut(s) 1141
BtsIMutI CAGTG 3 cut(s) 247, 487, 1141
Cac8I GCNNGC 3 cut(s) 342, 861, 1113
CaiI CAGNNNCTG 2 cut(s) 1019, 1143
CfoI GCGC 3 cut(s) 178, 814, 826
Cfr13I GGNCC 1 cut(s) 1073
Cfr9I CCCGGG 1 cut(s) 980
ClaI ATCGAT 2 cut(s) 72, 924
Csp6I GTAC 2 cut(s) 691, 790
CviAII CATG 3 cut(s) 542, 580, 1061
CviQI GTAC 2 cut(s) 691, 790
DdeI CTNAG 6 cut(s) 479, 695, 753, 785, 1012, 1107
DpnI GATC 9 cut(s) 71, 75, 121, 376, 507, 522, 852, 906, 923
DpnII GATC 9 cut(s) 69, 73, 119, 374, 505, 520, 850, 904, 921
DraIII CACNNNGTG 1 cut(s) 133
DrdI GACNNNNNNGTC 1 cut(s) 650
DseDI GACNNNNNNGTC 1 cut(s) 650
Eam1104I CTCTTC 1 cut(s) 1023
EarI CTCTTC 1 cut(s) 1023
Ecl136II GAGCTC 1 cut(s) 1011
Eco130I CCWWGG 1 cut(s) 614
Eco24I GRGCYC 1 cut(s) 1013
Eco47I GGWCC 1 cut(s) 1073
Eco53kI GAGCTC 1 cut(s) 1011
Eco57I CTGAAG 1 cut(s) 933
Eco81I CCTNAGG 1 cut(s) 785
Eco88I CYCGRG 2 cut(s) 630, 980
EcoICRI GAGCTC 1 cut(s) 1011
EcoO109I RGGNCCY 1 cut(s) 1073
EcoRII CCWGG 2 cut(s) 674, 1002
EcoT14I CCWWGG 1 cut(s) 614
EcoT38I GRGCYC 1 cut(s) 1013
ErhI CCWWGG 1 cut(s) 614
FaeI CATG 3 cut(s) 545, 583, 1064
FaqI GGGAC 2 cut(s) 506, 815
FatI CATG 3 cut(s) 541, 579, 1060
FauNDI CATATG 1 cut(s) 501
FblI GTMKAC 1 cut(s) 516
FokI GGATG 2 cut(s) 264, 672
FriOI GRGCYC 1 cut(s) 1013
FspBI CTAG 3 cut(s) 77, 341, 525
GlaI GCGC 3 cut(s) 177, 813, 825
GsaI CCCAGC 1 cut(s) 107
GsuI CTGGAG 1 cut(s) 1025
HaeII RGCGCY 1 cut(s) 179
HapII CCGG 4 cut(s) 908, 965, 981, 1070
HhaI GCGC 3 cut(s) 178, 814, 826
Hin1II CATG 3 cut(s) 545, 583, 1064
Hin6I GCGC 3 cut(s) 176, 812, 824
HinP1I GCGC 3 cut(s) 176, 812, 824
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HindIII AAGCTT 2 cut(s) 11, 1109
HinfI GANTC 4 cut(s) 308, 510, 719, 940
HpaII CCGG 4 cut(s) 908, 965, 981, 1070
HphI GGTGA 1 cut(s) 741
Hpy166II GTNNAC 2 cut(s) 517, 775
Hpy188I TCNGA 6 cut(s) 322, 361, 383, 818, 945, 1094
Hpy188III TCNNGA 6 cut(s) 117, 141, 716, 937, 951, 1025
Hpy8I GTNNAC 2 cut(s) 517, 775
Hpy99I CGWCG 2 cut(s) 518, 521
HpyAV CCTTC 4 cut(s) 259, 545, 718, 1115
HpyCH4III ACNGT 4 cut(s) 242, 650, 888, 1155
HpyCH4V TGCA 5 cut(s) 301, 461, 485, 744, 881
HpyF10VI GCNNNNNNNGC 6 cut(s) 443, 475, 869, 878, 975, 1008
HpyF3I CTNAG 6 cut(s) 479, 695, 753, 785, 1012, 1107
Hsp92II CATG 3 cut(s) 545, 583, 1064
HspAI GCGC 3 cut(s) 176, 812, 824
Kzo9I GATC 9 cut(s) 69, 73, 119, 374, 505, 520, 850, 904, 921
LmnI GCTCC 3 cut(s) 107, 553, 869
Lsp1109I GCAGC 9 cut(s) 285, 313, 349, 430, 445, 473, 756, 884, 1028
LweI GCATC 1 cut(s) 577
MaeI CTAG 3 cut(s) 77, 341, 525
MaeIII GTNAC 3 cut(s) 88, 1063, 1139
MalI GATC 9 cut(s) 71, 75, 121, 376, 507, 522, 852, 906, 923
MboI GATC 9 cut(s) 69, 73, 119, 374, 505, 520, 850, 904, 921
MboII GAAGA 5 cut(s) 33, 259, 423, 1040, 1137
MhlI GDGCHC 3 cut(s) 708, 980, 1013
MluCI AATT 2 cut(s) 111, 1097
MnlI CCTC 8 cut(s) 249, 326, 561, 599, 704, 723, 947, 1086
MseI TTAA 3 cut(s) 453, 626, 1056
MspA1I CMGCKG 1 cut(s) 1019
MspI CCGG 4 cut(s) 908, 965, 981, 1070
MspR9I CCNGG 6 cut(s) 676, 966, 981, 982, 1004, 1071
MvaI CCWGG 2 cut(s) 676, 1004
MvnI CGCG 2 cut(s) 812, 1080
MwoI GCNNNNNNNGC 6 cut(s) 443, 475, 869, 878, 975, 1008
NciI CCSGG 4 cut(s) 966, 981, 982, 1071
NdeI CATATG 1 cut(s) 501
NdeII GATC 9 cut(s) 69, 73, 119, 374, 505, 520, 850, 904, 921
NheI GCTAGC 1 cut(s) 340
NlaIII CATG 3 cut(s) 545, 583, 1064
NlaIV GGNNCC 3 cut(s) 963, 977, 1074
NmuCI GTSAC 2 cut(s) 1063, 1139
NspI RCATGY 1 cut(s) 545
PciI ACATGT 1 cut(s) 541
PcsI WCGNNNNNNNCGW 1 cut(s) 617
PfeI GAWTC 4 cut(s) 308, 510, 719, 940
PpuMI RGGWCCY 1 cut(s) 1073
PscI ACATGT 1 cut(s) 541
Psp124BI GAGCTC 1 cut(s) 1013
Psp5II RGGWCCY 1 cut(s) 1073
Psp6I CCWGG 2 cut(s) 674, 1002
PspFI CCCAGC 1 cut(s) 103
PspGI CCWGG 2 cut(s) 674, 1002
PspN4I GGNNCC 3 cut(s) 963, 977, 1074
PspPI GGNCC 1 cut(s) 1073
PspPPI RGGWCCY 1 cut(s) 1073
PstI CTGCAG 3 cut(s) 303, 463, 746
PstNI CAGNNNCTG 2 cut(s) 1019, 1143
PvuII CAGCTG 1 cut(s) 1019
RsaI GTAC 2 cut(s) 692, 791
RsaNI GTAC 2 cut(s) 691, 790
SacI GAGCTC 1 cut(s) 1013
SalI GTCGAC 1 cut(s) 515
SaqAI TTAA 3 cut(s) 453, 626, 1056
Sau3AI GATC 9 cut(s) 69, 73, 119, 374, 505, 520, 850, 904, 921
Sau96I GGNCC 1 cut(s) 1073
ScrFI CCNGG 6 cut(s) 676, 966, 981, 982, 1004, 1071
SduI GDGCHC 3 cut(s) 708, 980, 1013
SfaNI GCATC 1 cut(s) 577
SfcI CTRYAG 3 cut(s) 299, 459, 742
SgrDI CGTCGACG 1 cut(s) 515
SinI GGWCC 1 cut(s) 1073
SmaI CCCGGG 1 cut(s) 982
Sse9I AATT 2 cut(s) 111, 1097
SsiI CCGC 2 cut(s) 1080, 1115
SspMI CTAG 3 cut(s) 77, 341, 525
SstI GAGCTC 1 cut(s) 1013
StyD4I CCNGG 6 cut(s) 674, 964, 979, 980, 1002, 1069
StyI CCWWGG 1 cut(s) 614
TaaI ACNGT 4 cut(s) 242, 650, 888, 1155
TaqI TCGA 7 cut(s) 72, 373, 508, 516, 538, 892, 924
TasI AATT 2 cut(s) 111, 1097
TauI GCSGC 1 cut(s) 1083
TfiI GAWTC 4 cut(s) 308, 510, 719, 940
Tru1I TTAA 3 cut(s) 453, 626, 1056
Tru9I TTAA 3 cut(s) 453, 626, 1056
TscAI CASTG 3 cut(s) 247, 487, 1148
TseFI GTSAC 2 cut(s) 1063, 1139
TseI GCWGC 9 cut(s) 298, 301, 337, 443, 458, 461, 744, 872, 1016
Tsp45I GTSAC 2 cut(s) 1063, 1139
TspDTI ATGAA 2 cut(s) 306, 628
TspMI CCCGGG 1 cut(s) 980
TspRI CASTG 3 cut(s) 247, 487, 1148
VpaK11BI GGWCC 1 cut(s) 1073
XapI RAATTY 1 cut(s) 1097
XceI RCATGY 1 cut(s) 545
XmaI CCCGGG 1 cut(s) 980
XmiI GTMKAC 1 cut(s) 516
XspI CTAG 3 cut(s) 77, 341, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.