MD09G1161300.v1.1

Xylosyltransferase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0016897
Physical Location & Seq
Reverse (-)
13035744 .. 13038232
2489 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1161300.v1.1.491

Sequence Viewer

Length: 1278 bp
ATGGTTCTAAAGCTTCCCCCAATGAGAACACCAAACACTTCTTCGTGGTGTTTTGGTTATCGTCTATGGATCCTAGCACTTTCTGTTACTTTAGTCTTGTTGGGAGCAATTTCAAGATCATCTCACAATGTGTTTTCTGGATATGGCAACAAAAACCAACTCTCAATGAGAGTGCCACTAAAAGGGAATGGCAACCCCCCAGTCTTTGCTTATTGGATATGTGGAACTAAAGGAGAAAGTGAGAAGATTTTGAGGCTTTTGAAGGCAATATATCATCCAAGAAATCATTATTTGCTGCAGCTTGATTCGGGTTCATCGGATTATGATAGAGGGCAGCTAGCTCTCTCTGTTCAATCCGAAAGAGTTTTTCGATCTTTCGGAAATGTTTATGTTGTTGGGAAAAGTTATGCTCTCAACCAGATGGGGTCTTCTGCTCTCGCTGCCACACTTAATGCTGCAGCATTGCTTCTAAAGCTCAGTGCAGATTGGGACTGGTTCATCACTTTAAGTGCTTCTGACTATCCACTCATGAATCAGGATGATCTGCTCCATGCTTTCACTTTATTGCCAAGGAATACCAATTTTATACATTTTACAAACAAGACTGGCTGGAAAGAGCATATGGATCGAATCGTTGACGATCCTAGCTTATACCTTCAACATGTTGCTCCTCTTTTGTATATTGTAGAGAACAGAACCATGCCAGATGCTTTCAAAATCTTTGGAGGTTCGCCCTGGACGATTTTAACCCGAGATTTCCTGAACTACTGTGTCAAAGGATGGGATAACTTTCCCAGGAAGTTACTGATGTACCTCAGCAATGTGCCCTACCCTCTTGAATCCTACTTCCACACAATCATCTGCAGCTTACCTGAGTTCCGAAACTCTTTAGTGAACAATGACCTAAGGTACATTATTTGGGACACAAACGCGCTCGGAGAAGCGCAAGTCCTAAACATATCACACTACGATCAAGTGCTGGCAAGTGGAGCAGCCTTTGCAAGACCGTTTCGAGCAGATGATGATCTGGTGCTAAACAAGATCGATGAGAGTGTCTTGAATCGGACCTCAGGAGGGTTGGTTCCGGGCGAATGGTGCCCCGGGATAGGGAGAAGTAAGAGCCTGGAGAACTCAGCAGCTGGTCAGGAAGAGTTGTGTCCAAGTTGGGGCAACATTAACCATGTCACGCCGGGTCCTCGCGGCGTTAGTCTCCGAGAATTTTTGCCTAAGCTTGCTGTAGAAGGAAGATTTACAATCAGTCACTGCCAAGAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00532 ko00534 ko01100 map00532 map00534 map01100
Pfam Domains
Protein Families
Branch

Protein Analysis

426

Amino Acids

47.8

Weight (kDa)

8.09

Isoelectric Point (pI)

31.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 69 - 310 4e-57 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016897)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g37130
malus_domestica MD09G1161300.v1.1 MD17G1147100.v1.1
prunus_persica Prupe.3G020200_v2.0.a1
pyrus_communis pycom09g07980 pycom17g13980
rosa_chinensis RchiOBHm_Chr2g0149691
rosa_laevigata RLG00000020438
rosa_multiflora Rmu_sc0013937.1_g000003
rosa_roxburghii Rroxscaffold_2G00097790
rosa_rugosa Rorug02G0414700
rosa_samantha Rh2BG486500 Rh2DG495800
rosa_wichuraiana Rw2G038710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1095
AccII CGCG 2 cut(s) 932, 1200
AciI CCGC 1 cut(s) 1200
AclWI GGATC 4 cut(s) 64, 77, 633, 635
AcsI RAATTY 1 cut(s) 1217
AdeI CACNNNGTG 1 cut(s) 130
AfaI GTAC 2 cut(s) 812, 911
AfiI CCNNNNNNNGG 5 cut(s) 182, 1074, 1106, 1107, 1166
AflIII ACRYGT 1 cut(s) 661
AgsI TTSAA 7 cut(s) 114, 262, 353, 659, 715, 839, 1060
AjnI CCWGG 3 cut(s) 734, 794, 1122
AjuI GAANNNNNNNTTGG 2 cut(s) 25, 57
AloI GAACNNNNNNTCC 2 cut(s) 1065, 1097
AluBI AGCT 9 cut(s) 13, 301, 337, 341, 475, 648, 867, 1139, 1231
AluI AGCT 9 cut(s) 13, 301, 337, 341, 475, 648, 867, 1139, 1231
Alw26I GTCTC 1 cut(s) 1214
AlwI GGATC 4 cut(s) 64, 77, 633, 635
AlwNI CAGNNNCTG 2 cut(s) 1139, 1263
Ama87I CYCGRG 2 cut(s) 750, 1100
ApeKI GCWGC 9 cut(s) 295, 298, 334, 440, 455, 458, 864, 992, 1136
ApoI RAATTY 1 cut(s) 1217
AspLEI GCGC 2 cut(s) 934, 946
AspS9I GGNCC 2 cut(s) 1065, 1193
AsuC2I CCSGG 4 cut(s) 1086, 1101, 1102, 1191
AsuNHI GCTAGC 1 cut(s) 337
AvaI CYCGRG 2 cut(s) 750, 1100
AvaII GGWCC 2 cut(s) 1065, 1193
AxyI CCTNAGG 2 cut(s) 905, 1069
BaeGI GKGCMC 2 cut(s) 828, 1100
BaeI ACNNNNGTAYC 2 cut(s) 794, 827
BamHI GGATCC 1 cut(s) 69
BanI GGYRCC 1 cut(s) 1095
BbsI GAAGAC 1 cut(s) 420
BbvCI CCTCAGC 1 cut(s) 815
BbvI GCAGC 9 cut(s) 282, 310, 346, 427, 442, 470, 876, 1004, 1148
BccI CCATC 2 cut(s) 415, 774
BcgI CGANNNNNNTGC 2 cut(s) 608, 642
BciT130I CCWGG 3 cut(s) 736, 796, 1124
BcnI CCSGG 4 cut(s) 1086, 1101, 1102, 1191
BcoDI GTCTC 1 cut(s) 1214
BfaI CTAG 3 cut(s) 74, 338, 645
BfmI CTRYAG 4 cut(s) 296, 456, 862, 1236
Bme1390I CCNGG 7 cut(s) 736, 796, 1086, 1101, 1102, 1124, 1191
Bme18I GGWCC 2 cut(s) 1065, 1193
BmeT110I CYCGRG 2 cut(s) 750, 1100
BmgT120I GGNCC 2 cut(s) 1065, 1193
BmiI GGNNCC 4 cut(s) 71, 1083, 1097, 1194
BmrFI CCNGG 7 cut(s) 736, 796, 1086, 1101, 1102, 1124, 1191
BmrI ACTGGG 1 cut(s) 194
BmsI GCATC 1 cut(s) 697
BmtI GCTAGC 1 cut(s) 341
BmuI ACTGGG 1 cut(s) 194
BpiI GAAGAC 1 cut(s) 420
BpmI CTGGAG 1 cut(s) 1145
Bpu10I CCTNAGC 2 cut(s) 815, 1227
BpuMI CCSGG 4 cut(s) 1086, 1101, 1102, 1191
Bsa29I ATCGAT 1 cut(s) 1044
BsaBI GATNNNNATC 1 cut(s) 1023
BsaJI CCNNGG 5 cut(s) 569, 734, 794, 1099, 1100
BsaXI ACNNNNNCTCC 2 cut(s) 1065, 1095
Bsc4I CCNNNNNNNGG 5 cut(s) 182, 1074, 1106, 1107, 1166
Bse1I ACTGG 3 cut(s) 200, 497, 610
Bse21I CCTNAGG 2 cut(s) 905, 1069
Bse3DI GCAATG 2 cut(s) 461, 826
Bse8I GATNNNNATC 1 cut(s) 1023
BseBI CCWGG 3 cut(s) 736, 796, 1124
BseCI ATCGAT 1 cut(s) 1044
BseDI CCNNGG 5 cut(s) 569, 734, 794, 1099, 1100
BseGI GGATG 3 cut(s) 274, 544, 785
BseJI GATNNNNATC 1 cut(s) 1023
BseLI CCNNNNNNNGG 5 cut(s) 182, 1074, 1106, 1107, 1166
BseMI GCAATG 2 cut(s) 461, 826
BseMII CTCAG 5 cut(s) 490, 829, 864, 1083, 1146
BseNI ACTGG 3 cut(s) 200, 497, 610
BseRI GAGGAG 1 cut(s) 660
BseSI GKGCMC 2 cut(s) 828, 1100
BseXI GCAGC 9 cut(s) 282, 310, 346, 427, 442, 470, 876, 1004, 1148
BsgI GTGCAG 1 cut(s) 501
Bsh1236I CGCG 2 cut(s) 932, 1200
BshNI GGYRCC 1 cut(s) 1095
BshVI ATCGAT 1 cut(s) 1044
BsiHKCI CYCGRG 2 cut(s) 750, 1100
BsiSI CCGG 3 cut(s) 1085, 1101, 1190
BslFI GGGAC 2 cut(s) 503, 935
BslI CCNNNNNNNGG 5 cut(s) 182, 1074, 1106, 1107, 1166
BsmAI GTCTC 1 cut(s) 1214
BsmFI GGGAC 2 cut(s) 503, 935
BsoBI CYCGRG 2 cut(s) 750, 1100
Bsp1286I GDGCHC 2 cut(s) 828, 1100
Bsp143I GATC 9 cut(s) 69, 116, 371, 541, 625, 640, 970, 1024, 1041
BspACI CCGC 1 cut(s) 1200
BspCNI CTCAG 5 cut(s) 489, 828, 865, 1082, 1145
BspDI ATCGAT 1 cut(s) 1044
BspFNI CGCG 2 cut(s) 932, 1200
BspHI TCATGA 1 cut(s) 528
BspLI GGNNCC 4 cut(s) 71, 1083, 1097, 1194
BspMAI CTGCAG 3 cut(s) 300, 460, 866
BspOI GCTAGC 1 cut(s) 341
BspPI GGATC 4 cut(s) 64, 77, 633, 635
BspT107I GGYRCC 1 cut(s) 1095
BsrDI GCAATG 2 cut(s) 461, 826
BsrI ACTGG 3 cut(s) 200, 497, 610
BssECI CCNNGG 5 cut(s) 569, 734, 794, 1099, 1100
BssMI GATC 9 cut(s) 69, 116, 371, 541, 625, 640, 970, 1024, 1041
BssT1I CCWWGG 1 cut(s) 569
Bst2UI CCWGG 3 cut(s) 736, 796, 1124
Bst4CI ACNGT 3 cut(s) 770, 1008, 1275
Bst6I CTCTTC 1 cut(s) 1143
BstAPI GCANNNNNTGC 1 cut(s) 998
BstC8I GCNNGC 3 cut(s) 339, 981, 1233
BstDEI CTNAG 7 cut(s) 476, 815, 873, 905, 1069, 1132, 1227
BstF5I GGATG 3 cut(s) 274, 544, 785
BstFNI CGCG 2 cut(s) 932, 1200
BstHHI GCGC 2 cut(s) 934, 946
BstKTI GATC 9 cut(s) 72, 119, 374, 544, 628, 643, 973, 1027, 1044
BstMAI GTCTC 1 cut(s) 1214
BstMBI GATC 9 cut(s) 69, 116, 371, 541, 625, 640, 970, 1024, 1041
BstMWI GCNNNNNNNGC 5 cut(s) 440, 472, 989, 998, 1095
BstNI CCWGG 3 cut(s) 736, 796, 1124
BstNSI RCATGY 1 cut(s) 665
BstSCI CCNGG 7 cut(s) 734, 794, 1084, 1099, 1100, 1122, 1189
BstSFI CTRYAG 4 cut(s) 296, 456, 862, 1236
BstSLI GKGCMC 2 cut(s) 828, 1100
BstUI CGCG 2 cut(s) 932, 1200
BstV1I GCAGC 9 cut(s) 282, 310, 346, 427, 442, 470, 876, 1004, 1148
BstV2I GAAGAC 1 cut(s) 420
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
Bsu15I ATCGAT 1 cut(s) 1044
Bsu36I CCTNAGG 2 cut(s) 905, 1069
BsuTUI ATCGAT 1 cut(s) 1044
BtsCI GGATG 3 cut(s) 274, 544, 785
BtsI GCAGTG 1 cut(s) 1261
BtsIMutI CAGTG 2 cut(s) 484, 1261
Cac8I GCNNGC 3 cut(s) 339, 981, 1233
CaiI CAGNNNCTG 2 cut(s) 1139, 1263
CciI TCATGA 1 cut(s) 528
CfoI GCGC 2 cut(s) 934, 946
Cfr13I GGNCC 2 cut(s) 1065, 1193
Cfr9I CCCGGG 1 cut(s) 1100
ClaI ATCGAT 1 cut(s) 1044
Csp6I GTAC 2 cut(s) 811, 910
CviAII CATG 5 cut(s) 529, 551, 662, 700, 1181
CviQI GTAC 2 cut(s) 811, 910
DdeI CTNAG 7 cut(s) 476, 815, 873, 905, 1069, 1132, 1227
DpnI GATC 9 cut(s) 71, 118, 373, 543, 627, 642, 972, 1026, 1043
DpnII GATC 9 cut(s) 69, 116, 371, 541, 625, 640, 970, 1024, 1041
DraIII CACNNNGTG 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 1143
EarI CTCTTC 1 cut(s) 1143
Eco130I CCWWGG 1 cut(s) 569
Eco47I GGWCC 2 cut(s) 1065, 1193
Eco81I CCTNAGG 2 cut(s) 905, 1069
Eco88I CYCGRG 2 cut(s) 750, 1100
EcoO109I RGGNCCY 1 cut(s) 1193
EcoRII CCWGG 3 cut(s) 734, 794, 1122
EcoT14I CCWWGG 1 cut(s) 569
ErhI CCWWGG 1 cut(s) 569
FaeI CATG 5 cut(s) 532, 554, 665, 703, 1184
FaqI GGGAC 2 cut(s) 503, 935
FatI CATG 5 cut(s) 528, 550, 661, 699, 1180
FauNDI CATATG 1 cut(s) 621
FokI GGATG 3 cut(s) 261, 551, 792
FspBI CTAG 3 cut(s) 74, 338, 645
GlaI GCGC 2 cut(s) 933, 945
GsuI CTGGAG 1 cut(s) 1145
HapII CCGG 3 cut(s) 1085, 1101, 1190
HhaI GCGC 2 cut(s) 934, 946
Hin1II CATG 5 cut(s) 532, 554, 665, 703, 1184
Hin6I GCGC 2 cut(s) 932, 944
HinP1I GCGC 2 cut(s) 932, 944
HincII GTYRAC 1 cut(s) 637
HindII GTYRAC 1 cut(s) 637
HindIII AAGCTT 2 cut(s) 11, 1229
HinfI GANTC 5 cut(s) 305, 532, 630, 839, 1060
HpaII CCGG 3 cut(s) 1085, 1101, 1190
Hpy166II GTNNAC 2 cut(s) 637, 895
Hpy188I TCNGA 8 cut(s) 319, 358, 380, 517, 881, 938, 1065, 1214
Hpy188III TCNNGA 9 cut(s) 114, 138, 529, 536, 760, 836, 1057, 1071, 1145
Hpy8I GTNNAC 2 cut(s) 637, 895
HpyAV CCTTC 3 cut(s) 256, 665, 1235
HpyCH4III ACNGT 3 cut(s) 770, 1008, 1275
HpyCH4V TGCA 5 cut(s) 298, 458, 482, 864, 1001
HpyF10VI GCNNNNNNNGC 5 cut(s) 440, 472, 989, 998, 1095
HpyF3I CTNAG 7 cut(s) 476, 815, 873, 905, 1069, 1132, 1227
Hsp92II CATG 5 cut(s) 532, 554, 665, 703, 1184
HspAI GCGC 2 cut(s) 932, 944
Kzo9I GATC 9 cut(s) 69, 116, 371, 541, 625, 640, 970, 1024, 1041
LmnI GCTCC 4 cut(s) 104, 552, 673, 989
Lsp1109I GCAGC 9 cut(s) 282, 310, 346, 427, 442, 470, 876, 1004, 1148
LweI GCATC 1 cut(s) 697
MaeI CTAG 3 cut(s) 74, 338, 645
MaeIII GTNAC 4 cut(s) 85, 801, 1183, 1259
MalI GATC 9 cut(s) 71, 118, 373, 543, 627, 642, 972, 1026, 1043
MboI GATC 9 cut(s) 69, 116, 371, 541, 625, 640, 970, 1024, 1041
MboII GAAGA 5 cut(s) 33, 256, 420, 1160, 1257
MflI RGATCY 1 cut(s) 69
MhlI GDGCHC 2 cut(s) 828, 1100
MluCI AATT 3 cut(s) 108, 580, 1217
MnlI CCTC 9 cut(s) 246, 323, 681, 719, 824, 843, 1067, 1078, 1206
MseI TTAA 4 cut(s) 450, 506, 746, 1176
MspA1I CMGCKG 1 cut(s) 1139
MspI CCGG 3 cut(s) 1085, 1101, 1190
MspR9I CCNGG 7 cut(s) 736, 796, 1086, 1101, 1102, 1124, 1191
MvaI CCWGG 3 cut(s) 736, 796, 1124
MvnI CGCG 2 cut(s) 932, 1200
MwoI GCNNNNNNNGC 5 cut(s) 440, 472, 989, 998, 1095
NciI CCSGG 4 cut(s) 1086, 1101, 1102, 1191
NdeI CATATG 1 cut(s) 621
NdeII GATC 9 cut(s) 69, 116, 371, 541, 625, 640, 970, 1024, 1041
NheI GCTAGC 1 cut(s) 337
NlaIII CATG 5 cut(s) 532, 554, 665, 703, 1184
NlaIV GGNNCC 4 cut(s) 71, 1083, 1097, 1194
NmuCI GTSAC 2 cut(s) 1183, 1259
NspI RCATGY 1 cut(s) 665
PagI TCATGA 1 cut(s) 528
PciI ACATGT 1 cut(s) 661
PcsI WCGNNNNNNNCGW 1 cut(s) 737
PfeI GAWTC 5 cut(s) 305, 532, 630, 839, 1060
PpuMI RGGWCCY 1 cut(s) 1193
PscI ACATGT 1 cut(s) 661
Psp5II RGGWCCY 1 cut(s) 1193
Psp6I CCWGG 3 cut(s) 734, 794, 1122
PspGI CCWGG 3 cut(s) 734, 794, 1122
PspN4I GGNNCC 4 cut(s) 71, 1083, 1097, 1194
PspPI GGNCC 2 cut(s) 1065, 1193
PspPPI RGGWCCY 1 cut(s) 1193
PstI CTGCAG 3 cut(s) 300, 460, 866
PstNI CAGNNNCTG 2 cut(s) 1139, 1263
PsuI RGATCY 1 cut(s) 69
PvuII CAGCTG 1 cut(s) 1139
RsaI GTAC 2 cut(s) 812, 911
RsaNI GTAC 2 cut(s) 811, 910
SaqAI TTAA 4 cut(s) 450, 506, 746, 1176
Sau3AI GATC 9 cut(s) 69, 116, 371, 541, 625, 640, 970, 1024, 1041
Sau96I GGNCC 2 cut(s) 1065, 1193
ScrFI CCNGG 7 cut(s) 736, 796, 1086, 1101, 1102, 1124, 1191
SduI GDGCHC 2 cut(s) 828, 1100
SfaNI GCATC 1 cut(s) 697
SfcI CTRYAG 4 cut(s) 296, 456, 862, 1236
SinI GGWCC 2 cut(s) 1065, 1193
SmaI CCCGGG 1 cut(s) 1102
Sse9I AATT 3 cut(s) 108, 580, 1217
SsiI CCGC 1 cut(s) 1200
SspMI CTAG 3 cut(s) 74, 338, 645
StyD4I CCNGG 7 cut(s) 734, 794, 1084, 1099, 1100, 1122, 1189
StyI CCWWGG 1 cut(s) 569
TaaI ACNGT 3 cut(s) 770, 1008, 1275
TaqI TCGA 4 cut(s) 370, 628, 1012, 1044
TasI AATT 3 cut(s) 108, 580, 1217
TauI GCSGC 1 cut(s) 1203
TfiI GAWTC 5 cut(s) 305, 532, 630, 839, 1060
Tru1I TTAA 4 cut(s) 450, 506, 746, 1176
Tru9I TTAA 4 cut(s) 450, 506, 746, 1176
TscAI CASTG 2 cut(s) 484, 1268
TseFI GTSAC 2 cut(s) 1183, 1259
TseI GCWGC 9 cut(s) 295, 298, 334, 440, 455, 458, 864, 992, 1136
Tsp45I GTSAC 2 cut(s) 1183, 1259
TspDTI ATGAA 3 cut(s) 303, 487, 545
TspMI CCCGGG 1 cut(s) 1100
TspRI CASTG 2 cut(s) 484, 1268
VpaK11BI GGWCC 2 cut(s) 1065, 1193
XapI RAATTY 1 cut(s) 1217
XceI RCATGY 1 cut(s) 665
XmaI CCCGGG 1 cut(s) 1100
XspI CTAG 3 cut(s) 74, 338, 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.