FvH4_6g38520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017504
Physical Location & Seq
Forward (+)
30480038 .. 30480870
833 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38520.t1

Sequence Viewer

Length: 294 bp
ATGGAAAACAGAGAAGTCAGAGAACTACGAGAGGTTTTTGACAGACTGGAGAAGAGCTGCAGCTCGAGCAGCTCCAAGTCTTCGTCGACGTCGAGGAAGACGTGGTCGTTAAAGAAGGTGATCAGCAAGGAGCTGTGGCCTAGGAAATTCTCGTCCGTGTTCCGGTGGAAGCGCGTCGACTTGCGTCTGAGCATCATCGACGACGTCGTCTTCAAGATACTCTCCGTCGTGGAGGCTGTCGTTCTTGTCTCTACTTTATGCTTCTTCTTCCTCTGCTGCGGTTGCCACATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.32

Weight (kDa)

9.5

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06475
fragaria_vesca FvH4_6g38520
malus_domestica MD09G1150000.v1.1 MD17G1137200.v1.1
prunus_persica Prupe.3G175200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151771
rosa_multiflora Rmu_co8423145.1_g000001 Rmu_sc0002042.1_g000008
rosa_roxburghii Rroxscaffold_2G00096170
rosa_rugosa Rorug02G0428900
rosa_samantha Rh2DG513400
rosa_wichuraiana Rw2G040150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 206
AatII GACGTC 2 cut(s) 92, 207
AccI GTMKAC 2 cut(s) 86, 177
AccII CGCG 1 cut(s) 174
AciI CCGC 1 cut(s) 279
AcsI RAATTY 1 cut(s) 146
AcyI GRCGYC 2 cut(s) 89, 204
AfiI CCNNNNNNNGG 1 cut(s) 162
AgsI TTSAA 1 cut(s) 214
AjiI CACGTC 1 cut(s) 102
AluBI AGCT 4 cut(s) 57, 63, 72, 133
AluI AGCT 4 cut(s) 57, 63, 72, 133
Alw26I GTCTC 1 cut(s) 253
Ama87I CYCGRG 1 cut(s) 64
AoxI GGCC 1 cut(s) 137
ApeKI GCWGC 4 cut(s) 57, 60, 69, 276
ApoI RAATTY 1 cut(s) 146
AspA2I CCTAGG 1 cut(s) 140
AspLEI GCGC 1 cut(s) 174
AsuHPI GGTGA 1 cut(s) 130
AvaI CYCGRG 1 cut(s) 64
AvrII CCTAGG 1 cut(s) 140
BbsI GAAGAC 3 cut(s) 72, 104, 202
BbvI GCAGC 4 cut(s) 44, 72, 81, 263
BclI TGATCA 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 253
BfaI CTAG 1 cut(s) 141
BfmI CTRYAG 1 cut(s) 58
BisI GCNGC 4 cut(s) 58, 61, 70, 277
BlnI CCTAGG 1 cut(s) 140
BlsI GCNGC 4 cut(s) 59, 62, 71, 278
BmeT110I CYCGRG 1 cut(s) 64
BmgBI CACGTC 1 cut(s) 102
BmsI GCATC 1 cut(s) 201
BoxI GACNNNNGTC 1 cut(s) 183
BpiI GAAGAC 3 cut(s) 72, 104, 202
BpmI CTGGAG 1 cut(s) 68
BsaHI GRCGYC 2 cut(s) 89, 204
BsaJI CCNNGG 1 cut(s) 140
BsaWI WCCGGW 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 162
BseMII CTCAG 1 cut(s) 179
BseNI ACTGG 1 cut(s) 51
BseXI GCAGC 4 cut(s) 44, 72, 81, 263
Bsh1236I CGCG 1 cut(s) 174
BshFI GGCC 1 cut(s) 139
BsiHKCI CYCGRG 1 cut(s) 64
BsiSI CCGG 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 162
BsmAI GTCTC 1 cut(s) 253
BsnI GGCC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 64
Bsp143I GATC 1 cut(s) 120
BspACI CCGC 1 cut(s) 279
BspANI GGCC 1 cut(s) 139
BspCNI CTCAG 1 cut(s) 180
BspFNI CGCG 1 cut(s) 174
BspMAI CTGCAG 1 cut(s) 62
BspQI GCTCTTC 1 cut(s) 47
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 1 cut(s) 120
BssNI GRCGYC 2 cut(s) 89, 204
BssT1I CCWWGG 1 cut(s) 140
Bst6I CTCTTC 1 cut(s) 47
BstACI GRCGYC 2 cut(s) 89, 204
BstDEI CTNAG 1 cut(s) 188
BstFNI CGCG 1 cut(s) 174
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 1 cut(s) 123
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 1 cut(s) 120
BstMWI GCNNNNNNNGC 3 cut(s) 66, 69, 282
BstPAI GACNNNNGTC 1 cut(s) 183
BstSFI CTRYAG 1 cut(s) 58
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 4 cut(s) 44, 72, 81, 263
BstV2I GAAGAC 3 cut(s) 72, 104, 202
BsuRI GGCC 1 cut(s) 139
BtrI CACGTC 1 cut(s) 102
CfoI GCGC 1 cut(s) 174
CseI GACGC 2 cut(s) 163, 173
CviJI RGCY 6 cut(s) 57, 63, 72, 133, 139, 236
CviKI_1 RGCY 6 cut(s) 57, 63, 72, 133, 139, 236
DdeI CTNAG 1 cut(s) 188
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
DrdI GACNNNNNNGTC 1 cut(s) 206
DseDI GACNNNNNNGTC 1 cut(s) 206
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 140
Eco88I CYCGRG 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 140
FaiI YATR 1 cut(s) 259
FbaI TGATCA 1 cut(s) 120
FblI GTMKAC 2 cut(s) 86, 177
Fnu4HI GCNGC 4 cut(s) 58, 61, 70, 277
Fsp4HI GCNGC 4 cut(s) 58, 61, 70, 277
FspBI CTAG 1 cut(s) 141
GlaI GCGC 1 cut(s) 173
GluI GCNGC 4 cut(s) 58, 61, 70, 277
GsuI CTGGAG 1 cut(s) 68
HaeIII GGCC 1 cut(s) 139
HapII CCGG 1 cut(s) 163
HgaI GACGC 2 cut(s) 163, 173
HhaI GCGC 1 cut(s) 174
Hin1I GRCGYC 2 cut(s) 89, 204
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HincII GTYRAC 2 cut(s) 87, 178
HindII GTYRAC 2 cut(s) 87, 178
HpaII CCGG 1 cut(s) 163
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 2 cut(s) 87, 178
Hpy188I TCNGA 3 cut(s) 20, 189, 293
Hpy188III TCNNGA 1 cut(s) 214
Hpy8I GTNNAC 2 cut(s) 87, 178
Hpy99I CGWCG 8 cut(s) 88, 91, 94, 179, 203, 206, 209, 230
HpyAV CCTTC 1 cut(s) 109
HpyCH4IV ACGT 3 cut(s) 89, 101, 204
HpyCH4V TGCA 1 cut(s) 60
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 69, 282
HpyF3I CTNAG 1 cut(s) 188
HpySE526I ACGT 3 cut(s) 89, 101, 204
Hsp92I GRCGYC 2 cut(s) 89, 204
HspAI GCGC 1 cut(s) 172
Ksp22I TGATCA 1 cut(s) 120
Kzo9I GATC 1 cut(s) 120
LguI GCTCTTC 1 cut(s) 47
LmnI GCTCC 2 cut(s) 77, 130
LpnPI CCDG 2 cut(s) 32, 176
Lsp1109I GCAGC 4 cut(s) 44, 72, 81, 263
LweI GCATC 1 cut(s) 201
MaeI CTAG 1 cut(s) 141
MaeII ACGT 3 cut(s) 89, 101, 204
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 6 cut(s) 64, 72, 109, 202, 256, 259
MluCI AATT 1 cut(s) 146
MnlI CCTC 4 cut(s) 25, 87, 226, 281
MseI TTAA 1 cut(s) 110
MspI CCGG 1 cut(s) 163
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 3 cut(s) 66, 69, 282
NdeII GATC 1 cut(s) 120
PaeR7I CTCGAG 1 cut(s) 64
PciSI GCTCTTC 1 cut(s) 47
PcsI WCGNNNNNNNCGW 3 cut(s) 89, 98, 204
PflFI GACNNNGTC 3 cut(s) 103, 203, 206
PkrI GCNGC 4 cut(s) 59, 62, 71, 278
PshAI GACNNNNGTC 1 cut(s) 183
PspXI VCTCGAGB 1 cut(s) 64
PstI CTGCAG 1 cut(s) 62
PsyI GACNNNGTC 3 cut(s) 103, 203, 206
SalI GTCGAC 2 cut(s) 85, 176
SapI GCTCTTC 1 cut(s) 47
SaqAI TTAA 1 cut(s) 110
SatI GCNGC 4 cut(s) 58, 61, 70, 277
Sau3AI GATC 1 cut(s) 120
SetI ASST 9 cut(s) 36, 59, 65, 74, 92, 104, 120, 135, 207
SfaNI GCATC 1 cut(s) 201
SfcI CTRYAG 1 cut(s) 58
Sfr274I CTCGAG 1 cut(s) 64
SgrDI CGTCGACG 1 cut(s) 85
SlaI CTCGAG 1 cut(s) 64
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
Sse9I AATT 1 cut(s) 146
SsiI CCGC 1 cut(s) 279
SspMI CTAG 1 cut(s) 141
StyI CCWWGG 1 cut(s) 140
TaiI ACGT 3 cut(s) 92, 104, 207
TaqI TCGA 5 cut(s) 65, 86, 92, 177, 198
TasI AATT 1 cut(s) 146
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TseI GCWGC 4 cut(s) 57, 60, 69, 276
TspGWI ACGGA 2 cut(s) 145, 214
Tth111I GACNNNGTC 3 cut(s) 103, 203, 206
XapI RAATTY 1 cut(s) 146
XhoI CTCGAG 1 cut(s) 64
XmaJI CCTAGG 1 cut(s) 140
XmiI GTMKAC 2 cut(s) 86, 177
XspI CTAG 1 cut(s) 141
ZraI GACGTC 2 cut(s) 90, 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.