MD09G1150000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0017504
Physical Location & Seq
Reverse (-)
11809492 .. 11809734
243 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1150000.v1.1.491

Sequence Viewer

Length: 243 bp
ATGGAAAATGATCAAAAGAGCTCACCGGCAACAACAAAGAAGGAGAAGGCAGCGTGGTCGTTAAGGAAGGTGATCAGCAAAGAGTTATGGCCAAGGAAATTCTGTGTGTTCAAATGGAAGCGCGTGAACTTTCAGATCACCGTCCTTGACGACGTCGTCTTCAAGATACTATCCGTCGTGGAGGCCGTCGTTCTGGTCTCGACGCTCTGCTTCTTCTACCTTTGCTGCGGTTGCCACATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.3

Weight (kDa)

9.27

Isoelectric Point (pI)

36.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06475
fragaria_vesca FvH4_6g38520
malus_domestica MD09G1150000.v1.1 MD17G1137200.v1.1
prunus_persica Prupe.3G175200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151771
rosa_multiflora Rmu_co8423145.1_g000001 Rmu_sc0002042.1_g000008
rosa_roxburghii Rroxscaffold_2G00096170
rosa_rugosa Rorug02G0428900
rosa_samantha Rh2DG513400
rosa_wichuraiana Rw2G040150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 155
AatII GACGTC 1 cut(s) 156
AccII CGCG 1 cut(s) 123
AciI CCGC 1 cut(s) 228
AcoI YGGCCR 1 cut(s) 89
AcsI RAATTY 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 153
AgsI TTSAA 2 cut(s) 112, 163
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Alw21I GWGCWC 1 cut(s) 23
Alw26I GTCTC 1 cut(s) 202
AoxI GGCC 2 cut(s) 89, 183
ApeKI GCWGC 2 cut(s) 50, 225
ApoI RAATTY 1 cut(s) 98
AspLEI GCGC 1 cut(s) 123
AsuHPI GGTGA 3 cut(s) 15, 82, 130
BalI TGGCCA 1 cut(s) 91
BanII GRGCYC 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 151
Bbv12I GWGCWC 1 cut(s) 23
BbvI GCAGC 2 cut(s) 62, 212
BceAI ACGGC 1 cut(s) 170
BcgI CGANNNNNNTGC 2 cut(s) 39, 73
BclI TGATCA 2 cut(s) 10, 72
BcoDI GTCTC 1 cut(s) 202
BisI GCNGC 2 cut(s) 51, 226
BlsI GCNGC 2 cut(s) 52, 227
BpiI GAAGAC 1 cut(s) 151
BsaHI GRCGYC 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 202
BsaJI CCNNGG 1 cut(s) 92
Bse118I RCCGGY 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 92
BseXI GCAGC 2 cut(s) 62, 212
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 2 cut(s) 91, 185
BsiHKAI GWGCWC 1 cut(s) 23
BsiSI CCGG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 202
BsnI GGCC 2 cut(s) 91, 185
Bso31I GGTCTC 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 23
Bsp143I GATC 3 cut(s) 10, 72, 135
BspACI CCGC 1 cut(s) 228
BspANI GGCC 2 cut(s) 91, 185
BspFNI CGCG 1 cut(s) 123
BspTNI GGTCTC 1 cut(s) 202
BsrFI RCCGGY 1 cut(s) 25
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 3 cut(s) 10, 72, 135
BssNI GRCGYC 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 92
Bst4CI ACNGT 1 cut(s) 142
BstACI GRCGYC 1 cut(s) 153
BstFNI CGCG 1 cut(s) 123
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 3 cut(s) 13, 75, 138
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 3 cut(s) 10, 72, 135
BstMWI GCNNNNNNNGC 1 cut(s) 231
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 62, 212
BstV2I GAAGAC 1 cut(s) 151
BsuRI GGCC 2 cut(s) 91, 185
CfoI GCGC 1 cut(s) 123
Cfr10I RCCGGY 1 cut(s) 25
CseI GACGC 1 cut(s) 211
CviJI RGCY 3 cut(s) 21, 91, 185
CviKI_1 RGCY 3 cut(s) 21, 91, 185
DpnI GATC 3 cut(s) 12, 74, 137
DpnII GATC 3 cut(s) 10, 72, 135
DrdI GACNNNNNNGTC 1 cut(s) 155
DseDI GACNNNNNNGTC 1 cut(s) 155
EaeI YGGCCR 1 cut(s) 89
Ecl136II GAGCTC 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 92
Eco24I GRGCYC 1 cut(s) 23
Eco31I GGTCTC 1 cut(s) 202
Eco53kI GAGCTC 1 cut(s) 21
EcoICRI GAGCTC 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 92
EcoT38I GRGCYC 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 92
FaiI YATR 1 cut(s) 88
FbaI TGATCA 2 cut(s) 10, 72
Fnu4HI GCNGC 2 cut(s) 51, 226
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 2 cut(s) 51, 226
GlaI GCGC 1 cut(s) 122
GluI GCNGC 2 cut(s) 51, 226
HaeIII GGCC 2 cut(s) 91, 185
HapII CCGG 1 cut(s) 26
HgaI GACGC 1 cut(s) 211
HhaI GCGC 1 cut(s) 123
Hin1I GRCGYC 1 cut(s) 153
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HpaII CCGG 1 cut(s) 26
HphI GGTGA 3 cut(s) 15, 82, 130
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 2 cut(s) 135, 242
Hpy188III TCNNGA 2 cut(s) 163, 199
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 5 cut(s) 155, 158, 179, 191, 205
HpyAV CCTTC 3 cut(s) 34, 40, 61
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 153
HpyF10VI GCNNNNNNNGC 1 cut(s) 231
HpySE526I ACGT 1 cut(s) 153
Hsp92I GRCGYC 1 cut(s) 153
HspAI GCGC 1 cut(s) 121
Ksp22I TGATCA 2 cut(s) 10, 72
Kzo9I GATC 3 cut(s) 10, 72, 135
LpnPI CCDG 2 cut(s) 39, 179
Lsp1109I GCAGC 2 cut(s) 62, 212
MaeII ACGT 1 cut(s) 153
MalI GATC 3 cut(s) 12, 74, 137
MboI GATC 3 cut(s) 10, 72, 135
MboII GAAGA 2 cut(s) 151, 205
MhlI GDGCHC 1 cut(s) 23
MlsI TGGCCA 1 cut(s) 91
MluCI AATT 1 cut(s) 98
MluNI TGGCCA 1 cut(s) 91
MnlI CCTC 1 cut(s) 175
Mox20I TGGCCA 1 cut(s) 91
MscI TGGCCA 1 cut(s) 91
MseI TTAA 1 cut(s) 62
Msp20I TGGCCA 1 cut(s) 91
MspI CCGG 1 cut(s) 26
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 231
NdeII GATC 3 cut(s) 10, 72, 135
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PflFI GACNNNGTC 2 cut(s) 152, 155
PkrI GCNGC 2 cut(s) 52, 227
Psp124BI GAGCTC 1 cut(s) 23
PsyI GACNNNGTC 2 cut(s) 152, 155
SacI GAGCTC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 2 cut(s) 51, 226
Sau3AI GATC 3 cut(s) 10, 72, 135
SduI GDGCHC 1 cut(s) 23
SetI ASST 4 cut(s) 23, 72, 156, 222
Sse9I AATT 1 cut(s) 98
SsiI CCGC 1 cut(s) 228
SstI GAGCTC 1 cut(s) 23
StyI CCWWGG 1 cut(s) 92
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 1 cut(s) 156
TaqI TCGA 1 cut(s) 200
TasI AATT 1 cut(s) 98
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TseI GCWGC 2 cut(s) 50, 225
TspGWI ACGGA 1 cut(s) 163
Tth111I GACNNNGTC 2 cut(s) 152, 155
XapI RAATTY 1 cut(s) 98
ZraI GACGTC 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.