MD17G1137200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0017504
Physical Location & Seq
Reverse (-)
12281037 .. 12281279
243 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1137200.v1.1.491

Sequence Viewer

Length: 243 bp
ATGGAAAATGATCAAAAGAACTCACCAGCAACAACAAAGAAGGAGAAGGCGGCGTGGTCGTTAAAGAAGGTGATCAGCAAAGAGTTATGGCCAAGGAAATTCTCAGTGTTCAAATGGAAGCGCGTGGACTTTCAAACGACCATACTCGACGGCGTCGTCTTCAAGATACTATCCGTTGTGGAGGCCGTCGTTTTGGTCTCGGCGCTCTGCTTCTTCTACCTTTGCTGTGGTTGCCACATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.2

Weight (kDa)

9.36

Isoelectric Point (pI)

32.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06475
fragaria_vesca FvH4_6g38520
malus_domestica MD09G1150000.v1.1 MD17G1137200.v1.1
prunus_persica Prupe.3G175200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151771
rosa_multiflora Rmu_co8423145.1_g000001 Rmu_sc0002042.1_g000008
rosa_roxburghii Rroxscaffold_2G00096170
rosa_rugosa Rorug02G0428900
rosa_samantha Rh2DG513400
rosa_wichuraiana Rw2G040150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 155
AccII CGCG 1 cut(s) 123
AciI CCGC 1 cut(s) 50
AcoI YGGCCR 1 cut(s) 89
AcsI RAATTY 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 153
AgsI TTSAA 3 cut(s) 112, 134, 163
Alw26I GTCTC 1 cut(s) 202
AoxI GGCC 2 cut(s) 89, 183
ApoI RAATTY 1 cut(s) 98
AspLEI GCGC 2 cut(s) 123, 205
AsuHPI GGTGA 2 cut(s) 15, 82
BalI TGGCCA 1 cut(s) 91
BbsI GAAGAC 1 cut(s) 151
BceAI ACGGC 2 cut(s) 166, 170
BclI TGATCA 2 cut(s) 10, 72
BcoDI GTCTC 1 cut(s) 202
BfoI RGCGCY 1 cut(s) 206
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
BpiI GAAGAC 1 cut(s) 151
BsaHI GRCGYC 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 202
BsaJI CCNNGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 92
BseMII CTCAG 1 cut(s) 117
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 2 cut(s) 91, 185
BsmAI GTCTC 1 cut(s) 202
BsnI GGCC 2 cut(s) 91, 185
Bso31I GGTCTC 1 cut(s) 202
Bsp143I GATC 2 cut(s) 10, 72
BspACI CCGC 1 cut(s) 50
BspANI GGCC 2 cut(s) 91, 185
BspCNI CTCAG 1 cut(s) 116
BspFNI CGCG 1 cut(s) 123
BspTNI GGTCTC 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 2 cut(s) 10, 72
BssNI GRCGYC 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 92
BstACI GRCGYC 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 103
BstFNI CGCG 1 cut(s) 123
BstH2I RGCGCY 1 cut(s) 206
BstHHI GCGC 2 cut(s) 123, 205
BstKTI GATC 2 cut(s) 13, 75
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 2 cut(s) 10, 72
BstMWI GCNNNNNNNGC 1 cut(s) 231
BstUI CGCG 1 cut(s) 123
BstV2I GAAGAC 1 cut(s) 151
BsuRI GGCC 2 cut(s) 91, 185
BtsIMutI CAGTG 1 cut(s) 111
CfoI GCGC 2 cut(s) 123, 205
CseI GACGC 1 cut(s) 142
CviJI RGCY 2 cut(s) 91, 185
CviKI_1 RGCY 2 cut(s) 91, 185
DdeI CTNAG 1 cut(s) 103
DpnI GATC 2 cut(s) 12, 74
DpnII GATC 2 cut(s) 10, 72
DrdI GACNNNNNNGTC 1 cut(s) 155
DseDI GACNNNNNNGTC 1 cut(s) 155
EaeI YGGCCR 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 92
Eco31I GGTCTC 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 92
ErhI CCWWGG 1 cut(s) 92
FaiI YATR 2 cut(s) 88, 143
FbaI TGATCA 2 cut(s) 10, 72
Fnu4HI GCNGC 1 cut(s) 51
Fsp4HI GCNGC 1 cut(s) 51
GlaI GCGC 2 cut(s) 122, 204
GluI GCNGC 1 cut(s) 51
HaeII RGCGCY 1 cut(s) 206
HaeIII GGCC 2 cut(s) 91, 185
HgaI GACGC 1 cut(s) 142
HhaI GCGC 2 cut(s) 123, 205
Hin1I GRCGYC 1 cut(s) 153
Hin6I GCGC 2 cut(s) 121, 203
HinP1I GCGC 2 cut(s) 121, 203
HphI GGTGA 2 cut(s) 15, 82
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 1 cut(s) 242
Hpy188III TCNNGA 1 cut(s) 163
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 3 cut(s) 152, 158, 191
HpyAV CCTTC 3 cut(s) 34, 40, 61
HpyF10VI GCNNNNNNNGC 1 cut(s) 231
HpyF3I CTNAG 1 cut(s) 103
Hsp92I GRCGYC 1 cut(s) 153
HspAI GCGC 2 cut(s) 121, 203
Ksp22I TGATCA 2 cut(s) 10, 72
Kzo9I GATC 2 cut(s) 10, 72
LpnPI CCDG 1 cut(s) 39
MalI GATC 2 cut(s) 12, 74
MboI GATC 2 cut(s) 10, 72
MboII GAAGA 2 cut(s) 151, 205
MlsI TGGCCA 1 cut(s) 91
MluCI AATT 1 cut(s) 98
MluNI TGGCCA 1 cut(s) 91
MnlI CCTC 1 cut(s) 175
Mox20I TGGCCA 1 cut(s) 91
MscI TGGCCA 1 cut(s) 91
MseI TTAA 1 cut(s) 62
Msp20I TGGCCA 1 cut(s) 91
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 231
NdeII GATC 2 cut(s) 10, 72
NmeAIII GCCGAG 1 cut(s) 179
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PflFI GACNNNGTC 1 cut(s) 152
PkrI GCNGC 1 cut(s) 52
PsyI GACNNNGTC 1 cut(s) 152
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 2 cut(s) 10, 72
SetI ASST 2 cut(s) 72, 222
SgeI CNNG 8 cut(s) 38, 66, 105, 134, 136, 158, 175, 211
Sse9I AATT 1 cut(s) 98
SsiI CCGC 1 cut(s) 50
StyI CCWWGG 1 cut(s) 92
TaqI TCGA 1 cut(s) 147
TasI AATT 1 cut(s) 98
TauI GCSGC 1 cut(s) 53
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TscAI CASTG 1 cut(s) 111
TspGWI ACGGA 1 cut(s) 163
TspRI CASTG 1 cut(s) 111
Tth111I GACNNNGTC 1 cut(s) 152
XapI RAATTY 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.