Rroxscaffold_2G00096170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017504
Physical Location & Seq
Reverse (-)
17399207 .. 17399485
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00096170.1

Sequence Viewer

Length: 279 bp
ATGGAAAACAGAGAACTACGAGAGGTATTTGACAGACTGGAGAAGAGCAGCTCAAACAGCTCCAAGTCGTCGACGTCAACGAAGACGTGGTCGTTAAAGAAGGTGATCAGCAAGGAGCTGTGGCCAAGGAAATTATCGTCGGTGTTCCGGTGGAAGCGTGTCGACTTGCGGCTGCGCATCATAGACGACGTCGTCTTCAAGATACTCTCTGTCGTGGAGGCTGTCGTTCTGGTCTCTACCCTATGCTTCTTCTTCCTTTGCTGCGGTTGCCACATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.76

Weight (kDa)

9.64

Isoelectric Point (pI)

40.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06475
fragaria_vesca FvH4_6g38520
malus_domestica MD09G1150000.v1.1 MD17G1137200.v1.1
prunus_persica Prupe.3G175200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151771
rosa_multiflora Rmu_co8423145.1_g000001 Rmu_sc0002042.1_g000008
rosa_roxburghii Rroxscaffold_2G00096170
rosa_rugosa Rorug02G0428900
rosa_samantha Rh2DG513400
rosa_wichuraiana Rw2G040150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 191
AatII GACGTC 2 cut(s) 77, 192
Acc16I TGCGCA 1 cut(s) 176
AccI GTMKAC 2 cut(s) 71, 162
AciI CCGC 2 cut(s) 169, 264
AcoI YGGCCR 1 cut(s) 122
AcyI GRCGYC 2 cut(s) 74, 189
AgsI TTSAA 1 cut(s) 199
AjiI CACGTC 1 cut(s) 87
AluBI AGCT 3 cut(s) 51, 60, 118
AluI AGCT 3 cut(s) 51, 60, 118
Alw26I GTCTC 1 cut(s) 238
AoxI GGCC 1 cut(s) 122
ApeKI GCWGC 3 cut(s) 48, 172, 261
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
AspLEI GCGC 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 115
BalI TGGCCA 1 cut(s) 124
BbsI GAAGAC 2 cut(s) 89, 187
BbvI GCAGC 3 cut(s) 60, 159, 248
BclI TGATCA 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 238
BisI GCNGC 4 cut(s) 49, 170, 173, 262
BlsI GCNGC 4 cut(s) 50, 171, 174, 263
BmgBI CACGTC 1 cut(s) 87
BmsI GCATC 1 cut(s) 186
BpiI GAAGAC 2 cut(s) 89, 187
BpmI CTGGAG 1 cut(s) 59
BsaHI GRCGYC 2 cut(s) 74, 189
BsaI GGTCTC 1 cut(s) 238
BsaJI CCNNGG 1 cut(s) 125
BsaWI WCCGGW 1 cut(s) 147
Bse1I ACTGG 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 125
BseNI ACTGG 1 cut(s) 42
BseXI GCAGC 3 cut(s) 60, 159, 248
BshFI GGCC 1 cut(s) 124
BsiSI CCGG 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 238
BsnI GGCC 1 cut(s) 124
Bso31I GGTCTC 1 cut(s) 238
Bsp143I GATC 1 cut(s) 105
BspACI CCGC 2 cut(s) 169, 264
BspANI GGCC 1 cut(s) 124
BspQI GCTCTTC 1 cut(s) 38
BspTNI GGTCTC 1 cut(s) 238
BsrI ACTGG 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 125
BssMI GATC 1 cut(s) 105
BssNI GRCGYC 2 cut(s) 74, 189
BssT1I CCWWGG 1 cut(s) 125
Bst6I CTCTTC 1 cut(s) 38
BstACI GRCGYC 2 cut(s) 74, 189
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 1 cut(s) 108
BstMAI GTCTC 1 cut(s) 238
BstMBI GATC 1 cut(s) 105
BstMWI GCNNNNNNNGC 2 cut(s) 57, 267
BstV1I GCAGC 3 cut(s) 60, 159, 248
BstV2I GAAGAC 2 cut(s) 89, 187
BsuRI GGCC 1 cut(s) 124
BtrI CACGTC 1 cut(s) 87
CfoI GCGC 1 cut(s) 177
CviJI RGCY 6 cut(s) 51, 60, 118, 124, 172, 221
CviKI_1 RGCY 6 cut(s) 51, 60, 118, 124, 172, 221
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
DrdI GACNNNNNNGTC 1 cut(s) 191
DseDI GACNNNNNNGTC 1 cut(s) 191
EaeI YGGCCR 1 cut(s) 122
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 125
Eco31I GGTCTC 1 cut(s) 238
EcoT14I CCWWGG 1 cut(s) 125
ErhI CCWWGG 1 cut(s) 125
FaiI YATR 2 cut(s) 182, 244
FbaI TGATCA 1 cut(s) 105
FblI GTMKAC 2 cut(s) 71, 162
Fnu4HI GCNGC 4 cut(s) 49, 170, 173, 262
Fsp4HI GCNGC 4 cut(s) 49, 170, 173, 262
FspI TGCGCA 1 cut(s) 176
GlaI GCGC 1 cut(s) 176
GluI GCNGC 4 cut(s) 49, 170, 173, 262
GsuI CTGGAG 1 cut(s) 59
HaeIII GGCC 1 cut(s) 124
HapII CCGG 1 cut(s) 148
HhaI GCGC 1 cut(s) 177
Hin1I GRCGYC 2 cut(s) 74, 189
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HincII GTYRAC 3 cut(s) 72, 78, 163
HindII GTYRAC 3 cut(s) 72, 78, 163
HpaII CCGG 1 cut(s) 148
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 3 cut(s) 72, 78, 163
Hpy188I TCNGA 1 cut(s) 278
Hpy188III TCNNGA 1 cut(s) 199
Hpy8I GTNNAC 3 cut(s) 72, 78, 163
Hpy99I CGWCG 5 cut(s) 73, 76, 142, 191, 194
HpyAV CCTTC 1 cut(s) 94
HpyCH4IV ACGT 3 cut(s) 74, 86, 189
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 267
HpySE526I ACGT 3 cut(s) 74, 86, 189
Hsp92I GRCGYC 2 cut(s) 74, 189
HspAI GCGC 1 cut(s) 175
Ksp22I TGATCA 1 cut(s) 105
Kzo9I GATC 1 cut(s) 105
LguI GCTCTTC 1 cut(s) 38
LmnI GCTCC 2 cut(s) 65, 115
LpnPI CCDG 3 cut(s) 23, 161, 215
Lsp1109I GCAGC 3 cut(s) 60, 159, 248
LweI GCATC 1 cut(s) 186
MaeII ACGT 3 cut(s) 74, 86, 189
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MboII GAAGA 5 cut(s) 55, 94, 187, 241, 244
MlsI TGGCCA 1 cut(s) 124
MluCI AATT 1 cut(s) 131
MluNI TGGCCA 1 cut(s) 124
MnlI CCTC 2 cut(s) 16, 211
Mox20I TGGCCA 1 cut(s) 124
MscI TGGCCA 1 cut(s) 124
MseI TTAA 1 cut(s) 95
Msp20I TGGCCA 1 cut(s) 124
MspI CCGG 1 cut(s) 148
MwoI GCNNNNNNNGC 2 cut(s) 57, 267
NdeII GATC 1 cut(s) 105
NsbI TGCGCA 1 cut(s) 176
PciSI GCTCTTC 1 cut(s) 38
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PflFI GACNNNGTC 3 cut(s) 88, 188, 191
PkrI GCNGC 4 cut(s) 50, 171, 174, 263
PsyI GACNNNGTC 3 cut(s) 88, 188, 191
SalI GTCGAC 2 cut(s) 70, 161
SapI GCTCTTC 1 cut(s) 38
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 4 cut(s) 49, 170, 173, 262
Sau3AI GATC 1 cut(s) 105
SetI ASST 8 cut(s) 27, 53, 62, 77, 89, 105, 120, 192
SfaNI GCATC 1 cut(s) 186
SgrDI CGTCGACG 1 cut(s) 70
Sse9I AATT 1 cut(s) 131
SsiI CCGC 2 cut(s) 169, 264
StyI CCWWGG 1 cut(s) 125
TaiI ACGT 3 cut(s) 77, 89, 192
TaqI TCGA 2 cut(s) 71, 162
TasI AATT 1 cut(s) 131
TauI GCSGC 1 cut(s) 172
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TseI GCWGC 3 cut(s) 48, 172, 261
Tth111I GACNNNGTC 3 cut(s) 88, 188, 191
XmiI GTMKAC 2 cut(s) 71, 162
ZraI GACGTC 2 cut(s) 75, 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.