FvH4_6g38852

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017344
Physical Location & Seq
Reverse (-)
30759802 .. 30760386
585 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38852.t1

Sequence Viewer

Length: 585 bp
ATGGCCAAGCCAGAAGGAAATCGCCATGAAAGGGCTCCGGTGATAATCGCCATGAAAGGCCATCCCGGCACCGGAAAAACCACCTTAGCTCGTTCACTAGCTTCAACCCTCAAAATCCCTCTCATAGACAAAGACGACGTGCGGGACTCCACGTTGACTCTACAAGAAACCAGAGTCCCATCTTCCTTGCTAAATGACATGTCGTACCGCGCAATCTGGCAGCTGGCGTCTACGCAGCTACAGCTCGGGCTCAACGTCGTCGTGGACTCGCCGCTCTCCCGGCGGGAACACCTCGACCGGCTCCGCGAGATAGCGGCGGCGTCAGGCGGCGGGGTGGTGGTGGTGGAGTGCAAGCCGACGGACGAGGATGAATGGCGCCGGAGGCTGGAGGGGCGCGATGAAGCCACCTGGCACAAGCCGTCCACGTGGCGGGAGATGGAGGGACTGTTGGAAAGCTACGACGGTTGCACGGATTATGACGTAGGGGACGTGCCGAAGGTGGTGGTGGATACTACGGCGGGTGTCGCGGTTCAGGAGCGAGTATACTCTGTGGTCGAGTTTATCAAAACTCACTGTGGGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_33 Ten1_2

Protein Analysis

195

Amino Acids

21.59

Weight (kDa)

5.58

Isoelectric Point (pI)

44.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zeta_toxin PF06414 9 - 114 1.4e-06 Zeta toxin
AAA_33 PF13671 16 - 136 4.4e-17 AAA domain
AAA_18 PF13238 16 - 134 3.7e-07 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017344)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g38852
prunus_persica Prupe.3G178900_v2.0.a1
pyrus_communis pycom17g12730 pycom17g12770
rosa_chinensis RchiOBHm_Chr2g0152451
rosa_laevigata RLG00000020634
rosa_multiflora Rmu_sc0005366.1_g000014
rosa_roxburghii Rroxscaffold_2G00095710
rosa_samantha Rh2AG494600 Rh2BG506800 Rh2CG480800 Rh2DG518000
rosa_wichuraiana Rw2G040700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 68, 375
AccBSI CCGCTC 1 cut(s) 274
AccI GTMKAC 2 cut(s) 230, 543
AccII CGCG 4 cut(s) 210, 306, 396, 527
AcoI YGGCCR 1 cut(s) 3
AcvI CACGTG 1 cut(s) 426
AcyI GRCGYC 3 cut(s) 227, 320, 376
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 4 cut(s) 31, 71, 385, 429
AflIII ACRYGT 1 cut(s) 198
AgsI TTSAA 1 cut(s) 105
AjiI CACGTC 2 cut(s) 139, 490
AjnI CCWGG 1 cut(s) 407
AluBI AGCT 6 cut(s) 89, 101, 223, 238, 244, 456
AluI AGCT 6 cut(s) 89, 101, 223, 238, 244, 456
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 2 cut(s) 3, 58
ApeKI GCWGC 2 cut(s) 220, 235
AspLEI GCGC 3 cut(s) 212, 378, 396
AsuC2I CCSGG 2 cut(s) 66, 280
AsuHPI GGTGA 1 cut(s) 52
AvaI CYCGRG 1 cut(s) 245
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 68, 375
BanII GRGCYC 2 cut(s) 37, 252
BbrPI CACGTG 1 cut(s) 426
BbvI GCAGC 2 cut(s) 232, 247
BccI CCATC 3 cut(s) 69, 187, 430
BceAI ACGGC 2 cut(s) 403, 531
BciT130I CCWGG 1 cut(s) 409
BciVI GTATCC 1 cut(s) 502
BcnI CCSGG 2 cut(s) 66, 280
BfaI CTAG 2 cut(s) 98, 583
BfmI CTRYAG 1 cut(s) 239
BfoI RGCGCY 1 cut(s) 379
BfuI GTATCC 1 cut(s) 502
BglI GCCNNNNNGGC 1 cut(s) 66
BisI GCNGC 6 cut(s) 221, 236, 272, 315, 318, 328
BlsI GCNGC 6 cut(s) 222, 237, 273, 316, 319, 329
Bme1390I CCNGG 3 cut(s) 66, 280, 409
BmeT110I CYCGRG 1 cut(s) 245
BmgBI CACGTC 2 cut(s) 139, 490
BmiI GGNNCC 4 cut(s) 36, 70, 302, 377
BmrFI CCNGG 3 cut(s) 66, 280, 409
BpmI CTGGAG 1 cut(s) 407
Bpu10I CCTNAGC 1 cut(s) 85
BpuMI CCSGG 2 cut(s) 66, 280
BsaAI YACGTR 1 cut(s) 426
BsaHI GRCGYC 3 cut(s) 227, 320, 376
BsaWI WCCGGW 2 cut(s) 37, 71
BsaXI ACNNNNNCTCC 2 cut(s) 431, 461
Bsc4I CCNNNNNNNGG 4 cut(s) 31, 71, 385, 429
Bse118I RCCGGY 1 cut(s) 297
BseBI CCWGG 1 cut(s) 409
BseGI GGATG 2 cut(s) 61, 373
BseLI CCNNNNNNNGG 4 cut(s) 31, 71, 385, 429
BseXI GCAGC 2 cut(s) 232, 247
Bsh1236I CGCG 4 cut(s) 210, 306, 396, 527
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 2 cut(s) 5, 60
BshNI GGYRCC 2 cut(s) 68, 375
BsiEI CGRYCG 1 cut(s) 298
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 6 cut(s) 38, 66, 72, 280, 298, 379
BslFI GGGAC 4 cut(s) 158, 161, 456, 500
BslI CCNNNNNNNGG 4 cut(s) 31, 71, 385, 429
BsmFI GGGAC 4 cut(s) 158, 161, 456, 500
BsnI GGCC 2 cut(s) 5, 60
BsoBI CYCGRG 1 cut(s) 245
Bsp1286I GDGCHC 2 cut(s) 37, 252
BspANI GGCC 2 cut(s) 5, 60
BspFNI CGCG 4 cut(s) 210, 306, 396, 527
BspLI GGNNCC 4 cut(s) 36, 70, 302, 377
BspT107I GGYRCC 2 cut(s) 68, 375
BsrBI CCGCTC 1 cut(s) 274
BsrFI RCCGGY 1 cut(s) 297
BssAI RCCGGY 1 cut(s) 297
BssNAI GTATAC 1 cut(s) 544
BssNI GRCGYC 3 cut(s) 227, 320, 376
Bst1107I GTATAC 1 cut(s) 544
Bst2UI CCWGG 1 cut(s) 409
Bst4CI ACNGT 3 cut(s) 447, 464, 575
BstACI GRCGYC 3 cut(s) 227, 320, 376
BstBAI YACGTR 1 cut(s) 426
BstC8I GCNNGC 2 cut(s) 225, 353
BstDEI CTNAG 1 cut(s) 85
BstF5I GGATG 2 cut(s) 61, 373
BstFNI CGCG 4 cut(s) 210, 306, 396, 527
BstH2I RGCGCY 1 cut(s) 379
BstHHI GCGC 3 cut(s) 212, 378, 396
BstMCI CGRYCG 1 cut(s) 298
BstMWI GCNNNNNNNGC 6 cut(s) 66, 241, 280, 382, 391, 524
BstNI CCWGG 1 cut(s) 409
BstNSI RCATGY 1 cut(s) 202
BstSCI CCNGG 3 cut(s) 64, 278, 407
BstSFI CTRYAG 1 cut(s) 239
BstUI CGCG 4 cut(s) 210, 306, 396, 527
BstV1I GCAGC 2 cut(s) 232, 247
BstZ17I GTATAC 1 cut(s) 544
BsuI GTATCC 1 cut(s) 502
BsuRI GGCC 2 cut(s) 5, 60
BtgZI GCGATG 1 cut(s) 411
BtrI CACGTC 2 cut(s) 139, 490
BtsCI GGATG 2 cut(s) 61, 373
BtsIMutI CAGTG 1 cut(s) 571
Cac8I GCNNGC 2 cut(s) 225, 353
CfoI GCGC 3 cut(s) 212, 378, 396
Cfr10I RCCGGY 1 cut(s) 297
CseI GACGC 2 cut(s) 216, 309
Csp6I GTAC 1 cut(s) 205
CviAII CATG 3 cut(s) 26, 52, 199
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 1 cut(s) 85
DinI GGCGCC 1 cut(s) 377
EaeI YGGCCR 1 cut(s) 3
Eco24I GRGCYC 2 cut(s) 37, 252
Eco72I CACGTG 1 cut(s) 426
Eco88I CYCGRG 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 407
EcoT38I GRGCYC 2 cut(s) 37, 252
EgeI GGCGCC 1 cut(s) 377
EheI GGCGCC 1 cut(s) 377
FaeI CATG 3 cut(s) 29, 55, 202
FaiI YATR 6 cut(s) 27, 53, 125, 200, 477, 544
FaqI GGGAC 4 cut(s) 158, 161, 456, 500
FatI CATG 3 cut(s) 25, 51, 198
FauI CCCGC 5 cut(s) 135, 276, 323, 423, 511
FblI GTMKAC 2 cut(s) 230, 543
Fnu4HI GCNGC 6 cut(s) 221, 236, 272, 315, 318, 328
FokI GGATG 2 cut(s) 48, 380
FriOI GRGCYC 2 cut(s) 37, 252
Fsp4HI GCNGC 6 cut(s) 221, 236, 272, 315, 318, 328
FspBI CTAG 2 cut(s) 98, 583
GlaI GCGC 3 cut(s) 211, 377, 395
GluI GCNGC 6 cut(s) 221, 236, 272, 315, 318, 328
GsuI CTGGAG 1 cut(s) 407
HaeII RGCGCY 1 cut(s) 379
HaeIII GGCC 2 cut(s) 5, 60
HapII CCGG 6 cut(s) 38, 66, 72, 280, 298, 379
HgaI GACGC 2 cut(s) 216, 309
HhaI GCGC 3 cut(s) 212, 378, 396
Hin1I GRCGYC 3 cut(s) 227, 320, 376
Hin1II CATG 3 cut(s) 29, 55, 202
Hin6I GCGC 3 cut(s) 210, 376, 394
HinP1I GCGC 3 cut(s) 210, 376, 394
HincII GTYRAC 1 cut(s) 156
HindII GTYRAC 1 cut(s) 156
HinfI GANTC 4 cut(s) 146, 157, 174, 266
HpaII CCGG 6 cut(s) 38, 66, 72, 280, 298, 379
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 6 cut(s) 95, 156, 231, 265, 423, 544
Hpy188III TCNNGA 1 cut(s) 533
Hpy8I GTNNAC 6 cut(s) 95, 156, 231, 265, 423, 544
Hpy99I CGWCG 5 cut(s) 140, 260, 263, 361, 464
HpyAV CCTTC 2 cut(s) 8, 490
HpyCH4III ACNGT 3 cut(s) 447, 464, 575
HpyCH4IV ACGT 6 cut(s) 138, 152, 255, 425, 480, 489
HpyCH4V TGCA 2 cut(s) 351, 468
HpyF10VI GCNNNNNNNGC 6 cut(s) 66, 241, 280, 382, 391, 524
HpyF3I CTNAG 1 cut(s) 85
HpySE526I ACGT 6 cut(s) 138, 152, 255, 425, 480, 489
Hsp92I GRCGYC 3 cut(s) 227, 320, 376
Hsp92II CATG 3 cut(s) 29, 55, 202
HspAI GCGC 3 cut(s) 210, 376, 394
KasI GGCGCC 1 cut(s) 375
LmnI GCTCC 3 cut(s) 40, 306, 535
Lsp1109I GCAGC 2 cut(s) 232, 247
MaeI CTAG 2 cut(s) 98, 583
MaeII ACGT 6 cut(s) 138, 152, 255, 425, 480, 489
MbiI CCGCTC 1 cut(s) 274
MboII GAAGA 1 cut(s) 174
MhlI GDGCHC 2 cut(s) 37, 252
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 376
MlyI GAGTC 4 cut(s) 140, 151, 183, 260
MmeI TCCRAC 1 cut(s) 429
MnlI CCTC 7 cut(s) 119, 129, 302, 358, 375, 382, 433
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 223
MspI CCGG 6 cut(s) 38, 66, 72, 280, 298, 379
MspR9I CCNGG 3 cut(s) 66, 280, 409
MvaI CCWGG 1 cut(s) 409
MvnI CGCG 4 cut(s) 210, 306, 396, 527
MwoI GCNNNNNNNGC 6 cut(s) 66, 241, 280, 382, 391, 524
NarI GGCGCC 1 cut(s) 376
NciI CCSGG 2 cut(s) 66, 280
NlaIII CATG 3 cut(s) 29, 55, 202
NlaIV GGNNCC 4 cut(s) 36, 70, 302, 377
NspI RCATGY 1 cut(s) 202
PciI ACATGT 1 cut(s) 198
PcsI WCGNNNNNNNCGW 2 cut(s) 252, 486
PkrI GCNGC 6 cut(s) 222, 237, 273, 316, 319, 329
PleI GAGTC 4 cut(s) 140, 151, 182, 260
PluTI GGCGCC 1 cut(s) 379
PmaCI CACGTG 1 cut(s) 426
PmlI CACGTG 1 cut(s) 426
PpsI GAGTC 4 cut(s) 140, 151, 182, 260
Ppu21I YACGTR 1 cut(s) 426
PscI ACATGT 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 407
PspCI CACGTG 1 cut(s) 426
PspGI CCWGG 1 cut(s) 407
PspN4I GGNNCC 4 cut(s) 36, 70, 302, 377
PvuII CAGCTG 1 cut(s) 223
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SatI GCNGC 6 cut(s) 221, 236, 272, 315, 318, 328
SchI GAGTC 4 cut(s) 140, 151, 183, 260
ScrFI CCNGG 3 cut(s) 66, 280, 409
SduI GDGCHC 2 cut(s) 37, 252
SfcI CTRYAG 1 cut(s) 239
SfoI GGCGCC 1 cut(s) 377
SspDI GGCGCC 1 cut(s) 375
SspMI CTAG 2 cut(s) 98, 583
StyD4I CCNGG 3 cut(s) 64, 278, 407
TaaI ACNGT 3 cut(s) 447, 464, 575
TaiI ACGT 6 cut(s) 141, 155, 258, 428, 483, 492
TaqI TCGA 2 cut(s) 294, 555
TauI GCSGC 4 cut(s) 274, 317, 320, 330
TscAI CASTG 1 cut(s) 578
TseI GCWGC 2 cut(s) 220, 235
TspDTI ATGAA 4 cut(s) 42, 68, 384, 414
TspGWI ACGGA 2 cut(s) 374, 485
TspRI CASTG 1 cut(s) 578
XceI RCATGY 1 cut(s) 202
XmiI GTMKAC 2 cut(s) 230, 543
XspI CTAG 2 cut(s) 98, 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.