Rh2CG480800

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0017344
Physical Location & Seq
Reverse (-)
64557306 .. 64557911
606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG480800.1

Sequence Viewer

Length: 606 bp
ATGGCCGACGAAGAAGGAAAGGGCGGTTCGGTTCCGGTGATAATAGCCATGAAAGGCCATCCCGGCACCGGTAAAACCACTCTGGCTCGTTCATTAGCTTCAACCCTCAAAATCCCTCTCATAGACAAAGACGACGTGCGCGACTCCACTCTGACTCTCCAGGAAGCCGGGGTCGCCTCTTCCTTGCTGAACGACATGTCGTACGGCGCCATCTGGCAGCTCGCGTCCTCGCAGCTCCGCCTCGGGCTCAGCGTCGTCGTGGACTCGCCGCTCTCCCGGCGGGCCCACCTCGACCGGCTCCTCCAGATAGCGACGTCCGGCGGGGCCCGCCTGGTGGTGGTGGAGTGCAGGCCGGCGGACGAGGACGAGTGGCGCCGGAGGCTCGAGCGGCGCGGCGGCGGTGAAGGTGAAGATGAAGCCAGCTGGCACAAGCCGTCCACGTGGCGGGAGATGGAGAGGCTGCTGGAAAGCTACGACGGTTGCACGGATTATGATGCCGGAAACGTGCCAATGGTGGTGGTGGATACTACGGCGGGTGTCGCCGTTCAAGAGCTTGTATACTCTGTAGTCGAGTTCATCAAAACTCACACCAGTCTCCAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_33 Ten1_2

Protein Analysis

201

Amino Acids

21.85

Weight (kDa)

5.05

Isoelectric Point (pI)

51.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_33 PF13671 15 - 137 2.2e-17 AAA domain
KTI12 PF08433 15 - 190 2.6e-06 Chromatin associated protein KTI12
AAA_18 PF13238 15 - 138 4e-06 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017344)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g38852
prunus_persica Prupe.3G178900_v2.0.a1
pyrus_communis pycom17g12730 pycom17g12770
rosa_chinensis RchiOBHm_Chr2g0152451
rosa_laevigata RLG00000020634
rosa_multiflora Rmu_sc0005366.1_g000014
rosa_roxburghii Rroxscaffold_2G00095710
rosa_samantha Rh2AG494600 Rh2BG506800 Rh2CG480800 Rh2DG518000
rosa_wichuraiana Rw2G040700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 317
AccB1I GGYRCC 3 cut(s) 65, 206, 372
AccBSI CCGCTC 2 cut(s) 271, 388
AccI GTMKAC 1 cut(s) 558
AccII CGCG 3 cut(s) 141, 224, 393
AcoI YGGCCR 1 cut(s) 3
AcvI CACGTG 1 cut(s) 441
AcyI GRCGYC 3 cut(s) 207, 314, 373
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 4 cut(s) 68, 334, 337, 444
AflIII ACRYGT 1 cut(s) 195
AgeI ACCGGT 1 cut(s) 68
AgsI TTSAA 2 cut(s) 102, 548
AjiI CACGTC 1 cut(s) 136
AjnI CCWGG 2 cut(s) 159, 330
AluBI AGCT 6 cut(s) 98, 220, 235, 423, 471, 553
AluI AGCT 6 cut(s) 98, 220, 235, 423, 471, 553
Alw26I GTCTC 1 cut(s) 599
Ama87I CYCGRG 2 cut(s) 242, 383
AoxI GGCC 5 cut(s) 3, 55, 282, 324, 350
ApaI GGGCCC 2 cut(s) 286, 328
ApeKI GCWGC 3 cut(s) 217, 232, 460
AsiGI ACCGGT 1 cut(s) 68
AspLEI GCGC 4 cut(s) 141, 209, 375, 393
AspS9I GGNCC 4 cut(s) 282, 283, 324, 325
AsuC2I CCSGG 3 cut(s) 63, 169, 277
AsuHPI GGTGA 3 cut(s) 49, 413, 419
AvaI CYCGRG 2 cut(s) 242, 383
BaeGI GKGCMC 2 cut(s) 286, 328
BanI GGYRCC 3 cut(s) 65, 206, 372
BanII GRGCYC 3 cut(s) 249, 286, 328
BbrPI CACGTG 1 cut(s) 441
BbvI GCAGC 3 cut(s) 229, 244, 447
BccI CCATC 3 cut(s) 66, 218, 445
BceAI ACGGC 4 cut(s) 220, 418, 527, 546
BciT130I CCWGG 2 cut(s) 161, 332
BciVI GTATCC 1 cut(s) 517
BcnI CCSGG 3 cut(s) 63, 169, 277
BcoDI GTCTC 1 cut(s) 599
BfmI CTRYAG 1 cut(s) 564
BfoI RGCGCY 2 cut(s) 210, 376
BfuI GTATCC 1 cut(s) 517
BglI GCCNNNNNGGC 1 cut(s) 63
BisI GCNGC 7 cut(s) 218, 233, 269, 389, 394, 397, 461
BlpI GCTNAGC 1 cut(s) 248
BlsI GCNGC 7 cut(s) 219, 234, 270, 390, 395, 398, 462
Bme1390I CCNGG 5 cut(s) 63, 161, 169, 277, 332
BmeT110I CYCGRG 2 cut(s) 242, 383
BmgBI CACGTC 1 cut(s) 136
BmgT120I GGNCC 4 cut(s) 282, 283, 324, 325
BmiI GGNNCC 8 cut(s) 33, 67, 208, 284, 299, 325, 326, 374
BmrFI CCNGG 5 cut(s) 63, 161, 169, 277, 332
BmsI GCATC 1 cut(s) 484
BpmI CTGGAG 2 cut(s) 143, 287
Bpu1102I GCTNAGC 1 cut(s) 248
BpuMI CCSGG 3 cut(s) 63, 169, 277
BsaAI YACGTR 1 cut(s) 441
BsaHI GRCGYC 3 cut(s) 207, 314, 373
BsaJI CCNNGG 2 cut(s) 168, 241
BsaWI WCCGGW 2 cut(s) 34, 68
Bsc4I CCNNNNNNNGG 4 cut(s) 68, 334, 337, 444
Bse118I RCCGGY 3 cut(s) 68, 294, 352
Bse1I ACTGG 1 cut(s) 591
BseBI CCWGG 2 cut(s) 161, 332
BseDI CCNNGG 2 cut(s) 168, 241
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 4 cut(s) 68, 334, 337, 444
BseMII CTCAG 1 cut(s) 262
BseNI ACTGG 1 cut(s) 591
BseRI GAGGAG 1 cut(s) 290
BseSI GKGCMC 2 cut(s) 286, 328
BseXI GCAGC 3 cut(s) 229, 244, 447
BsgI GTGCAG 1 cut(s) 367
Bsh1236I CGCG 3 cut(s) 141, 224, 393
Bsh1285I CGRYCG 1 cut(s) 295
BshFI GGCC 5 cut(s) 5, 57, 284, 326, 352
BshNI GGYRCC 3 cut(s) 65, 206, 372
BshTI ACCGGT 1 cut(s) 68
BsiEI CGRYCG 1 cut(s) 295
BsiHKCI CYCGRG 2 cut(s) 242, 383
BsiWI CGTACG 1 cut(s) 201
BslI CCNNNNNNNGG 4 cut(s) 68, 334, 337, 444
BsmAI GTCTC 1 cut(s) 599
BsnI GGCC 5 cut(s) 5, 57, 284, 326, 352
BsoBI CYCGRG 2 cut(s) 242, 383
Bsp120I GGGCCC 2 cut(s) 282, 324
Bsp1286I GDGCHC 3 cut(s) 249, 286, 328
Bsp1720I GCTNAGC 1 cut(s) 248
BspANI GGCC 5 cut(s) 5, 57, 284, 326, 352
BspCNI CTCAG 1 cut(s) 261
BspFNI CGCG 3 cut(s) 141, 224, 393
BspLI GGNNCC 8 cut(s) 33, 67, 208, 284, 299, 325, 326, 374
BspT107I GGYRCC 3 cut(s) 65, 206, 372
BsrBI CCGCTC 2 cut(s) 271, 388
BsrFI RCCGGY 3 cut(s) 68, 294, 352
BsrI ACTGG 1 cut(s) 591
BssAI RCCGGY 3 cut(s) 68, 294, 352
BssECI CCNNGG 2 cut(s) 168, 241
BssNAI GTATAC 1 cut(s) 559
BssNI GRCGYC 3 cut(s) 207, 314, 373
Bst1107I GTATAC 1 cut(s) 559
Bst2UI CCWGG 2 cut(s) 161, 332
Bst4CI ACNGT 1 cut(s) 479
Bst6I CTCTTC 1 cut(s) 184
BstACI GRCGYC 3 cut(s) 207, 314, 373
BstBAI YACGTR 1 cut(s) 441
BstC8I GCNNGC 7 cut(s) 222, 282, 328, 350, 354, 421, 425
BstDEI CTNAG 1 cut(s) 248
BstF5I GGATG 1 cut(s) 58
BstFNI CGCG 3 cut(s) 141, 224, 393
BstH2I RGCGCY 2 cut(s) 210, 376
BstHHI GCGC 4 cut(s) 141, 209, 375, 393
BstMAI GTCTC 1 cut(s) 599
BstMCI CGRYCG 1 cut(s) 295
BstMWI GCNNNNNNNGC 7 cut(s) 63, 173, 277, 327, 379, 388, 539
BstNI CCWGG 2 cut(s) 161, 332
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 5 cut(s) 61, 159, 167, 275, 330
BstSFI CTRYAG 1 cut(s) 564
BstSLI GKGCMC 2 cut(s) 286, 328
BstUI CGCG 3 cut(s) 141, 224, 393
BstV1I GCAGC 3 cut(s) 229, 244, 447
BstZ17I GTATAC 1 cut(s) 559
BsuI GTATCC 1 cut(s) 517
BsuRI GGCC 5 cut(s) 5, 57, 284, 326, 352
BtrI CACGTC 1 cut(s) 136
BtsCI GGATG 1 cut(s) 58
Cac8I GCNNGC 7 cut(s) 222, 282, 328, 350, 354, 421, 425
CfoI GCGC 4 cut(s) 141, 209, 375, 393
Cfr10I RCCGGY 3 cut(s) 68, 294, 352
Cfr13I GGNCC 4 cut(s) 282, 283, 324, 325
CseI GACGC 2 cut(s) 213, 241
Csp6I GTAC 1 cut(s) 202
CspAI ACCGGT 1 cut(s) 68
CspCI CAANNNNNGTGG 2 cut(s) 498, 533
CviAII CATG 2 cut(s) 49, 196
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 1 cut(s) 248
DinI GGCGCC 2 cut(s) 208, 374
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 184
EarI CTCTTC 1 cut(s) 184
EciI GGCGGA 2 cut(s) 227, 371
Eco24I GRGCYC 3 cut(s) 249, 286, 328
Eco72I CACGTG 1 cut(s) 441
Eco88I CYCGRG 2 cut(s) 242, 383
EcoO109I RGGNCCY 1 cut(s) 324
EcoRII CCWGG 2 cut(s) 159, 330
EcoT38I GRGCYC 3 cut(s) 249, 286, 328
EgeI GGCGCC 2 cut(s) 208, 374
EheI GGCGCC 2 cut(s) 208, 374
FaeI CATG 2 cut(s) 52, 199
FaiI YATR 6 cut(s) 50, 122, 197, 492, 559, 604
FatI CATG 2 cut(s) 48, 195
FauI CCCGC 5 cut(s) 273, 314, 335, 438, 526
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 7 cut(s) 218, 233, 269, 389, 394, 397, 461
FokI GGATG 1 cut(s) 45
FriOI GRGCYC 3 cut(s) 249, 286, 328
Fsp4HI GCNGC 7 cut(s) 218, 233, 269, 389, 394, 397, 461
GlaI GCGC 4 cut(s) 140, 208, 374, 392
GluI GCNGC 7 cut(s) 218, 233, 269, 389, 394, 397, 461
GsuI CTGGAG 2 cut(s) 143, 287
HaeII RGCGCY 2 cut(s) 210, 376
HaeIII GGCC 5 cut(s) 5, 57, 284, 326, 352
HgaI GACGC 2 cut(s) 213, 241
HhaI GCGC 4 cut(s) 141, 209, 375, 393
Hin1I GRCGYC 3 cut(s) 207, 314, 373
Hin1II CATG 2 cut(s) 52, 199
Hin6I GCGC 4 cut(s) 139, 207, 373, 391
HinP1I GCGC 4 cut(s) 139, 207, 373, 391
HinfI GANTC 3 cut(s) 143, 154, 263
HphI GGTGA 3 cut(s) 49, 413, 419
Hpy166II GTNNAC 3 cut(s) 262, 438, 559
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 2 cut(s) 304, 548
Hpy8I GTNNAC 3 cut(s) 262, 438, 559
Hpy99I CGWCG 6 cut(s) 11, 137, 257, 260, 316, 479
HpyAV CCTTC 2 cut(s) 8, 398
HpyCH4III ACNGT 1 cut(s) 479
HpyCH4IV ACGT 4 cut(s) 135, 314, 440, 504
HpyCH4V TGCA 2 cut(s) 348, 483
HpyF10VI GCNNNNNNNGC 7 cut(s) 63, 173, 277, 327, 379, 388, 539
HpyF3I CTNAG 1 cut(s) 248
HpySE526I ACGT 4 cut(s) 135, 314, 440, 504
Hsp92I GRCGYC 3 cut(s) 207, 314, 373
Hsp92II CATG 2 cut(s) 52, 199
HspAI GCGC 4 cut(s) 139, 207, 373, 391
KasI GGCGCC 2 cut(s) 206, 372
KroI GCCGGC 1 cut(s) 352
KroNI GCCGGC 1 cut(s) 354
LmnI GCTCC 2 cut(s) 240, 303
Lsp1109I GCAGC 3 cut(s) 229, 244, 447
LweI GCATC 1 cut(s) 484
MaeII ACGT 4 cut(s) 135, 314, 440, 504
MbiI CCGCTC 2 cut(s) 271, 388
MboII GAAGA 3 cut(s) 23, 171, 422
MhlI GDGCHC 3 cut(s) 249, 286, 328
Mly113I GGCGCC 2 cut(s) 207, 373
MlyI GAGTC 3 cut(s) 137, 148, 257
MroNI GCCGGC 1 cut(s) 352
MspA1I CMGCKG 1 cut(s) 423
MspR9I CCNGG 5 cut(s) 63, 161, 169, 277, 332
MvaI CCWGG 2 cut(s) 161, 332
MvnI CGCG 3 cut(s) 141, 224, 393
MwoI GCNNNNNNNGC 7 cut(s) 63, 173, 277, 327, 379, 388, 539
NaeI GCCGGC 1 cut(s) 354
NarI GGCGCC 2 cut(s) 207, 373
NciI CCSGG 3 cut(s) 63, 169, 277
NgoMIV GCCGGC 1 cut(s) 352
NlaIII CATG 2 cut(s) 52, 199
NlaIV GGNNCC 8 cut(s) 33, 67, 208, 284, 299, 325, 326, 374
NspI RCATGY 1 cut(s) 199
PaeR7I CTCGAG 1 cut(s) 383
PciI ACATGT 1 cut(s) 195
PcsI WCGNNNNNNNCGW 2 cut(s) 138, 249
PdiI GCCGGC 1 cut(s) 354
Pfl23II CGTACG 1 cut(s) 201
PfoI TCCNGGA 1 cut(s) 159
PinAI ACCGGT 1 cut(s) 68
PkrI GCNGC 7 cut(s) 219, 234, 270, 390, 395, 398, 462
PleI GAGTC 3 cut(s) 137, 148, 257
PluTI GGCGCC 2 cut(s) 210, 376
PmaCI CACGTG 1 cut(s) 441
PmlI CACGTG 1 cut(s) 441
PpsI GAGTC 3 cut(s) 137, 148, 257
Ppu21I YACGTR 1 cut(s) 441
PscI ACATGT 1 cut(s) 195
Psp6I CCWGG 2 cut(s) 159, 330
PspCI CACGTG 1 cut(s) 441
PspGI CCWGG 2 cut(s) 159, 330
PspLI CGTACG 1 cut(s) 201
PspN4I GGNNCC 8 cut(s) 33, 67, 208, 284, 299, 325, 326, 374
PspOMI GGGCCC 2 cut(s) 282, 324
PspPI GGNCC 4 cut(s) 282, 283, 324, 325
PspXI VCTCGAGB 1 cut(s) 383
PvuII CAGCTG 1 cut(s) 423
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SatI GCNGC 7 cut(s) 218, 233, 269, 389, 394, 397, 461
Sau96I GGNCC 4 cut(s) 282, 283, 324, 325
SchI GAGTC 3 cut(s) 137, 148, 257
ScrFI CCNGG 5 cut(s) 63, 161, 169, 277, 332
SduI GDGCHC 3 cut(s) 249, 286, 328
SfaNI GCATC 1 cut(s) 484
SfcI CTRYAG 1 cut(s) 564
SfoI GGCGCC 2 cut(s) 208, 374
Sfr274I CTCGAG 1 cut(s) 383
SlaI CTCGAG 1 cut(s) 383
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
SspDI GGCGCC 2 cut(s) 206, 372
StyD4I CCNGG 5 cut(s) 61, 159, 167, 275, 330
TaaI ACNGT 1 cut(s) 479
TaiI ACGT 4 cut(s) 138, 317, 443, 507
TaqI TCGA 3 cut(s) 291, 384, 570
TauI GCSGC 4 cut(s) 271, 391, 396, 399
TseI GCWGC 3 cut(s) 217, 232, 460
TspDTI ATGAA 4 cut(s) 65, 81, 429, 565
TspGWI ACGGA 1 cut(s) 500
XceI RCATGY 1 cut(s) 199
XhoI CTCGAG 1 cut(s) 383
XmiI GTMKAC 1 cut(s) 558
ZraI GACGTC 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.