Prupe.3G178900_v2.0.a1

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0017344
Physical Location & Seq
Reverse (-)
19532040 .. 19533262
1223 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G178900.1

Sequence Viewer

Length: 645 bp
ATGGCCAGAGAAGAAGAAGAAGATAAAGGTAGAGTTCAAATGTTGATAGCAATGAAGGGCCATCCAGGCACAGGCAAAACCACCTTAGCCAATTCCTTAGCCTCAACTCTCAAACTCCCTCTCTTAGACAAAGACGACGTGCGCGACAAAATCCAGAGTCTCCAACCCGCATCCTCCTCCGCGTCTTCCGTACTAAACGACGCGTCGTACCGCGTCATCTGGCAGATCGCTGCCACCCAGCTACGCCTGGGCCTCAGCGTCATCGTGGACTCGCCCCTCTCCCGTAGGGCCCACTTCGAGTACCTGGCCCAGTTGGCATCGTCCAGTGGGGCCCGCCTCTTGATTGTGGAGTGTAGGCCCAAGGACGAGGCCGAGTGGCGCCGAAGGCTCGAGCGCCGCGCTGAGGCTGGTGGAGGGCCGGGCTGGCACAAGCCGTCCACGTGGCGGGATATGCAGAGGCTATTGGACGGGTACGGTGGGTGCACGGAGTACGATGTGGCCGATGTACCCAAGATGGTGGTGGATACTACGGCGGCTCTTGAAGTCGAGGAGCTTGTCTCCAGTGTGGTCCAGTTTATCGAAATTCACAGCCACAGGGGTCCGCGAATGACATCTGTCCACCAAGGACTAAATATTATGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_33 Ten1_2

Protein Analysis

215

Amino Acids

23.71

Weight (kDa)

6.32

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017344)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g38852
prunus_persica Prupe.3G178900_v2.0.a1
pyrus_communis pycom17g12730 pycom17g12770
rosa_chinensis RchiOBHm_Chr2g0152451
rosa_laevigata RLG00000020634
rosa_multiflora Rmu_sc0005366.1_g000014
rosa_roxburghii Rroxscaffold_2G00095710
rosa_samantha Rh2AG494600 Rh2BG506800 Rh2CG480800 Rh2DG518000
rosa_wichuraiana Rw2G040700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 378
AccII CGCG 6 cut(s) 144, 182, 203, 213, 399, 604
AciI CCGC 8 cut(s) 168, 180, 211, 334, 397, 445, 533, 602
AcoI YGGCCR 2 cut(s) 3, 498
AcsI RAATTY 1 cut(s) 582
AcvI CACGTG 1 cut(s) 441
AcyI GRCGYC 1 cut(s) 379
AfaI GTAC 6 cut(s) 192, 209, 302, 473, 491, 507
AfiI CCNNNNNNNGG 3 cut(s) 71, 403, 444
AflIII ACRYGT 1 cut(s) 201
AgsI TTSAA 2 cut(s) 38, 542
AjiI CACGTC 1 cut(s) 139
AjnI CCWGG 3 cut(s) 64, 246, 303
AluBI AGCT 2 cut(s) 241, 553
AluI AGCT 2 cut(s) 241, 553
Alw21I GWGCWC 1 cut(s) 485
Alw26I GTCTC 2 cut(s) 164, 562
Alw44I GTGCAC 1 cut(s) 481
Ama87I CYCGRG 1 cut(s) 389
ApaI GGGCCC 2 cut(s) 292, 334
ApaLI GTGCAC 1 cut(s) 481
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 582
AspLEI GCGC 4 cut(s) 144, 381, 396, 401
AsuC2I CCSGG 1 cut(s) 420
AvaI CYCGRG 1 cut(s) 389
AvaII GGWCC 2 cut(s) 568, 599
BaeGI GKGCMC 3 cut(s) 292, 334, 485
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 378
BanII GRGCYC 2 cut(s) 292, 334
BbrPI CACGTG 1 cut(s) 441
BbsI GAAGAC 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 485
BbvCI CCTCAGC 2 cut(s) 254, 402
BbvI GCAGC 1 cut(s) 217
BccI CCATC 2 cut(s) 69, 508
BceAI ACGGC 2 cut(s) 418, 546
BciT130I CCWGG 3 cut(s) 66, 248, 305
BciVI GTATCC 1 cut(s) 517
BcnI CCSGG 1 cut(s) 420
BcoDI GTCTC 2 cut(s) 164, 562
BfoI RGCGCY 2 cut(s) 382, 397
BfuI GTATCC 1 cut(s) 517
BglI GCCNNNNNGGC 3 cut(s) 66, 314, 424
BisI GCNGC 3 cut(s) 231, 397, 534
BlsI GCNGC 3 cut(s) 232, 398, 535
Bme1390I CCNGG 4 cut(s) 66, 248, 305, 420
Bme18I GGWCC 2 cut(s) 568, 599
BmeT110I CYCGRG 1 cut(s) 389
BmgBI CACGTC 1 cut(s) 139
BmiI GGNNCC 5 cut(s) 290, 331, 332, 380, 600
BmrFI CCNGG 4 cut(s) 66, 248, 305, 420
BmrI ACTGGG 1 cut(s) 304
BmsI GCATC 2 cut(s) 179, 326
BmuI ACTGGG 1 cut(s) 304
BoxI GACNNNNGTC 1 cut(s) 614
BpiI GAAGAC 1 cut(s) 177
BplI GAGNNNNNCTC 2 cut(s) 542, 574
BpmI CTGGAG 1 cut(s) 544
Bpu10I CCTNAGC 4 cut(s) 85, 97, 254, 402
BpuMI CCSGG 1 cut(s) 420
BsaAI YACGTR 1 cut(s) 441
BsaHI GRCGYC 1 cut(s) 379
BsaJI CCNNGG 3 cut(s) 247, 360, 622
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 403, 444
Bse1I ACTGG 4 cut(s) 310, 324, 561, 571
Bse3DI GCAATG 1 cut(s) 57
BseBI CCWGG 3 cut(s) 66, 248, 305
BseDI CCNNGG 3 cut(s) 247, 360, 622
BseGI GGATG 2 cut(s) 61, 170
BseLI CCNNNNNNNGG 3 cut(s) 71, 403, 444
BseMI GCAATG 1 cut(s) 57
BseMII CTCAG 2 cut(s) 268, 393
BseNI ACTGG 4 cut(s) 310, 324, 561, 571
BseRI GAGGAG 2 cut(s) 166, 563
BseSI GKGCMC 3 cut(s) 292, 334, 485
BseXI GCAGC 1 cut(s) 217
BseYI CCCAGC 1 cut(s) 237
Bsh1236I CGCG 6 cut(s) 144, 182, 203, 213, 399, 604
BshNI GGYRCC 1 cut(s) 378
BsiHKAI GWGCWC 1 cut(s) 485
BsiHKCI CYCGRG 1 cut(s) 389
BsiSI CCGG 1 cut(s) 419
BslI CCNNNNNNNGG 3 cut(s) 71, 403, 444
BsmAI GTCTC 2 cut(s) 164, 562
BsoBI CYCGRG 1 cut(s) 389
Bsp120I GGGCCC 2 cut(s) 288, 330
Bsp1286I GDGCHC 3 cut(s) 292, 334, 485
Bsp143I GATC 1 cut(s) 225
BspACI CCGC 8 cut(s) 168, 180, 211, 334, 397, 445, 533, 602
BspCNI CTCAG 2 cut(s) 267, 394
BspFNI CGCG 6 cut(s) 144, 182, 203, 213, 399, 604
BspLI GGNNCC 5 cut(s) 290, 331, 332, 380, 600
BspT107I GGYRCC 1 cut(s) 378
BsrDI GCAATG 1 cut(s) 57
BsrI ACTGG 4 cut(s) 310, 324, 561, 571
BssECI CCNNGG 3 cut(s) 247, 360, 622
BssMI GATC 1 cut(s) 225
BssNI GRCGYC 1 cut(s) 379
BssT1I CCWWGG 2 cut(s) 360, 622
Bst2UI CCWGG 3 cut(s) 66, 248, 305
Bst4CI ACNGT 1 cut(s) 476
BstACI GRCGYC 1 cut(s) 379
BstBAI YACGTR 1 cut(s) 441
BstC8I GCNNGC 2 cut(s) 334, 425
BstDEI CTNAG 5 cut(s) 85, 97, 124, 254, 402
BstF5I GGATG 2 cut(s) 61, 170
BstFNI CGCG 6 cut(s) 144, 182, 203, 213, 399, 604
BstH2I RGCGCY 2 cut(s) 382, 397
BstHHI GCGC 4 cut(s) 144, 381, 396, 401
BstKTI GATC 1 cut(s) 228
BstMAI GTCTC 2 cut(s) 164, 562
BstMBI GATC 1 cut(s) 225
BstMWI GCNNNNNNNGC 5 cut(s) 66, 314, 385, 424, 451
BstNI CCWGG 3 cut(s) 66, 248, 305
BstPAI GACNNNNGTC 1 cut(s) 614
BstSCI CCNGG 4 cut(s) 64, 246, 303, 418
BstSLI GKGCMC 3 cut(s) 292, 334, 485
BstUI CGCG 6 cut(s) 144, 182, 203, 213, 399, 604
BstV1I GCAGC 1 cut(s) 217
BstV2I GAAGAC 1 cut(s) 177
BstXI CCANNNNNNTGG 1 cut(s) 517
BsuI GTATCC 1 cut(s) 517
BtrI CACGTC 1 cut(s) 139
BtsCI GGATG 2 cut(s) 61, 170
BtsIMutI CAGTG 2 cut(s) 331, 568
Cac8I GCNNGC 2 cut(s) 334, 425
CfoI GCGC 4 cut(s) 144, 381, 396, 401
CseI GACGC 5 cut(s) 171, 192, 202, 209, 247
Csp6I GTAC 6 cut(s) 191, 208, 301, 472, 490, 506
CviQI GTAC 6 cut(s) 191, 208, 301, 472, 490, 506
DdeI CTNAG 5 cut(s) 85, 97, 124, 254, 402
DinI GGCGCC 1 cut(s) 380
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
EaeI YGGCCR 2 cut(s) 3, 498
Eco130I CCWWGG 2 cut(s) 360, 622
Eco24I GRGCYC 2 cut(s) 292, 334
Eco47I GGWCC 2 cut(s) 568, 599
Eco72I CACGTG 1 cut(s) 441
Eco88I CYCGRG 1 cut(s) 389
EcoO109I RGGNCCY 2 cut(s) 288, 330
EcoRII CCWGG 3 cut(s) 64, 246, 303
EcoT14I CCWWGG 2 cut(s) 360, 622
EcoT38I GRGCYC 2 cut(s) 292, 334
EgeI GGCGCC 1 cut(s) 380
EheI GGCGCC 1 cut(s) 380
ErhI CCWWGG 2 cut(s) 360, 622
FaiI YATR 2 cut(s) 452, 638
FauI CCCGC 3 cut(s) 175, 341, 438
Fnu4HI GCNGC 3 cut(s) 231, 397, 534
FokI GGATG 2 cut(s) 48, 157
FriOI GRGCYC 2 cut(s) 292, 334
Fsp4HI GCNGC 3 cut(s) 231, 397, 534
GlaI GCGC 4 cut(s) 143, 380, 395, 400
GluI GCNGC 3 cut(s) 231, 397, 534
GsaI CCCAGC 1 cut(s) 241
GsuI CTGGAG 1 cut(s) 544
HaeII RGCGCY 2 cut(s) 382, 397
HapII CCGG 1 cut(s) 419
HgaI GACGC 5 cut(s) 171, 192, 202, 209, 247
HhaI GCGC 4 cut(s) 144, 381, 396, 401
Hin1I GRCGYC 1 cut(s) 379
Hin6I GCGC 4 cut(s) 142, 379, 394, 399
HinP1I GCGC 4 cut(s) 142, 379, 394, 399
HinfI GANTC 2 cut(s) 157, 269
HpaII CCGG 1 cut(s) 419
Hpy166II GTNNAC 4 cut(s) 268, 438, 483, 619
Hpy188III TCNNGA 3 cut(s) 154, 340, 539
Hpy8I GTNNAC 4 cut(s) 268, 438, 483, 619
Hpy99I CGWCG 3 cut(s) 140, 203, 208
HpyAV CCTTC 2 cut(s) 49, 378
HpyCH4III ACNGT 1 cut(s) 476
HpyCH4IV ACGT 2 cut(s) 138, 440
HpyCH4V TGCA 2 cut(s) 454, 483
HpyF10VI GCNNNNNNNGC 5 cut(s) 66, 314, 385, 424, 451
HpyF3I CTNAG 5 cut(s) 85, 97, 124, 254, 402
HpySE526I ACGT 2 cut(s) 138, 440
Hsp92I GRCGYC 1 cut(s) 379
HspAI GCGC 4 cut(s) 142, 379, 394, 399
KasI GGCGCC 1 cut(s) 378
Kzo9I GATC 1 cut(s) 225
LmnI GCTCC 1 cut(s) 550
Lsp1109I GCAGC 1 cut(s) 217
LweI GCATC 2 cut(s) 179, 326
MaeII ACGT 2 cut(s) 138, 440
MalI GATC 1 cut(s) 227
MboI GATC 1 cut(s) 225
MboII GAAGA 5 cut(s) 23, 26, 29, 32, 177
MhlI GDGCHC 3 cut(s) 292, 334, 485
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 91, 582
MluI ACGCGT 1 cut(s) 201
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 379
MlyI GAGTC 2 cut(s) 166, 263
MmeI TCCRAC 1 cut(s) 187
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 643
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 419
MspR9I CCNGG 4 cut(s) 66, 248, 305, 420
MteI GCGCNGCGC 1 cut(s) 397
MvaI CCWGG 3 cut(s) 66, 248, 305
MvnI CGCG 6 cut(s) 144, 182, 203, 213, 399, 604
MwoI GCNNNNNNNGC 5 cut(s) 66, 314, 385, 424, 451
NarI GGCGCC 1 cut(s) 379
NciI CCSGG 1 cut(s) 420
NdeII GATC 1 cut(s) 225
NlaIV GGNNCC 5 cut(s) 290, 331, 332, 380, 600
NmeAIII GCCGAG 1 cut(s) 397
PaeR7I CTCGAG 1 cut(s) 389
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 498
PkrI GCNGC 3 cut(s) 232, 398, 535
PleI GAGTC 2 cut(s) 165, 263
PluTI GGCGCC 1 cut(s) 382
PmaCI CACGTG 1 cut(s) 441
PmlI CACGTG 1 cut(s) 441
PpsI GAGTC 2 cut(s) 165, 263
Ppu21I YACGTR 1 cut(s) 441
PshAI GACNNNNGTC 1 cut(s) 614
Psp6I CCWGG 3 cut(s) 64, 246, 303
PspCI CACGTG 1 cut(s) 441
PspFI CCCAGC 1 cut(s) 237
PspGI CCWGG 3 cut(s) 64, 246, 303
PspN4I GGNNCC 5 cut(s) 290, 331, 332, 380, 600
PspOMI GGGCCC 2 cut(s) 288, 330
PspXI VCTCGAGB 1 cut(s) 389
RsaI GTAC 6 cut(s) 192, 209, 302, 473, 491, 507
RsaNI GTAC 6 cut(s) 191, 208, 301, 472, 490, 506
SaqAI TTAA 1 cut(s) 643
SatI GCNGC 3 cut(s) 231, 397, 534
Sau3AI GATC 1 cut(s) 225
SchI GAGTC 2 cut(s) 166, 263
ScrFI CCNGG 4 cut(s) 66, 248, 305, 420
SduI GDGCHC 3 cut(s) 292, 334, 485
SetI ASST 7 cut(s) 31, 86, 141, 243, 306, 443, 555
SfaNI GCATC 2 cut(s) 179, 326
SfoI GGCGCC 1 cut(s) 380
Sfr274I CTCGAG 1 cut(s) 389
SinI GGWCC 2 cut(s) 568, 599
SlaI CTCGAG 1 cut(s) 389
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
Sse9I AATT 2 cut(s) 91, 582
SsiI CCGC 8 cut(s) 168, 180, 211, 334, 397, 445, 533, 602
SspDI GGCGCC 1 cut(s) 378
SspI AATATT 1 cut(s) 634
StyD4I CCNGG 4 cut(s) 64, 246, 303, 418
StyI CCWWGG 2 cut(s) 360, 622
TaaI ACNGT 1 cut(s) 476
TaiI ACGT 2 cut(s) 141, 443
TaqI TCGA 4 cut(s) 297, 390, 546, 579
TasI AATT 2 cut(s) 91, 582
TauI GCSGC 2 cut(s) 399, 536
Tru1I TTAA 1 cut(s) 643
Tru9I TTAA 1 cut(s) 643
TscAI CASTG 2 cut(s) 331, 568
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 1 cut(s) 68
TspGWI ACGGA 2 cut(s) 178, 500
TspRI CASTG 2 cut(s) 331, 568
VneI GTGCAC 1 cut(s) 481
VpaK11BI GGWCC 2 cut(s) 568, 599
XapI RAATTY 1 cut(s) 582
XcmI CCANNNNNNNNNTGG 1 cut(s) 517
XhoI CTCGAG 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.