FvH4_6g39290

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0018062
Physical Location & Seq
Forward (+)
31051457 .. 31054720
3264 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g39290.t2

Sequence Viewer

Length: 354 bp
ATGGCCTTGAGTACTGCTGTTGGCTTTGCAGCAAGTCGAGGTGTAGAGTTCCTCAAAATAGAGGGAGAGAACAAAACTACGTTCTCTTTGGTCACATACCGGATTCCTCCATCAGATGCAGTGACACAAGAGCTTCTGCATAGGTGCCTAAAGGAGCTGGATAATTTGAAAAGGGTGGAGTTTCGCCAAGTGACACCTGACACCAATGAGGCGGCCAACGTCCTTGCCAGAATGGCCATGGAGACGGAGGAGAGCTTGTTTTTGGCAGACAACCTTCTACCAGAGATAGCTGCAAGTCTGAATGCTGATGTCAATGGTCGTTATGTGCCATGGGTGCATCCGCACAATCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.04

Weight (kDa)

5.12

Isoelectric Point (pI)

28.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 2 - 110 3.8e-08 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018062)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g39290 FvH4_6g39290 FvH4_6g39290
rosa_chinensis RchiOBHm_Chr2g0153211
rosa_laevigata RLG00000020686
rosa_roxburghii Rroxscaffold_2G00095110
rosa_rugosa Rorug02G0437500
rosa_samantha Rh2AG500500 Rh2BG511900 Rh2CG486700 Rh2DG523900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 144
AciI CCGC 2 cut(s) 212, 341
AcoI YGGCCR 2 cut(s) 213, 234
AfaI GTAC 1 cut(s) 13
AgsI TTSAA 1 cut(s) 169
AluBI AGCT 4 cut(s) 133, 157, 255, 290
AluI AGCT 4 cut(s) 133, 157, 255, 290
Alw26I GTCTC 1 cut(s) 236
AoxI GGCC 3 cut(s) 3, 213, 234
ApeKI GCWGC 2 cut(s) 29, 290
BalI TGGCCA 1 cut(s) 236
BanI GGYRCC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 41, 277
BccI CCATC 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 236
BglI GCCNNNNNGGC 1 cut(s) 233
BisI GCNGC 3 cut(s) 30, 213, 291
BlsI GCNGC 3 cut(s) 31, 214, 292
BmcAI AGTACT 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 146
BmsI GCATC 2 cut(s) 106, 346
BpuEI CTTGAG 1 cut(s) 28
BsaJI CCNNGG 2 cut(s) 237, 329
BsaWI WCCGGW 1 cut(s) 99
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
BseDI CCNNGG 2 cut(s) 237, 329
BseGI GGATG 1 cut(s) 337
BseRI GAGGAG 1 cut(s) 263
BseXI GCAGC 2 cut(s) 41, 277
BshFI GGCC 3 cut(s) 5, 215, 236
BshNI GGYRCC 1 cut(s) 144
BsiSI CCGG 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 236
BsmBI CGTCTC 1 cut(s) 236
BsmI GAATGC 1 cut(s) 307
BsnI GGCC 3 cut(s) 5, 215, 236
Bsp19I CCATGG 2 cut(s) 237, 329
BspACI CCGC 2 cut(s) 212, 341
BspANI GGCC 3 cut(s) 5, 215, 236
BspLI GGNNCC 1 cut(s) 146
BspT107I GGYRCC 1 cut(s) 144
BssECI CCNNGG 2 cut(s) 237, 329
BssT1I CCWWGG 2 cut(s) 237, 329
BstDSI CCRYGG 2 cut(s) 237, 329
BstF5I GGATG 1 cut(s) 337
BstMAI GTCTC 1 cut(s) 236
BstMWI GCNNNNNNNGC 2 cut(s) 233, 334
BstV1I GCAGC 2 cut(s) 41, 277
BsuRI GGCC 3 cut(s) 5, 215, 236
BtgI CCRYGG 2 cut(s) 237, 329
BtsCI GGATG 1 cut(s) 337
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 126
Csp6I GTAC 1 cut(s) 12
CviAII CATG 2 cut(s) 238, 330
CviJI RGCY 8 cut(s) 5, 24, 133, 157, 215, 236, 255, 290
CviKI_1 RGCY 8 cut(s) 5, 24, 133, 157, 215, 236, 255, 290
CviQI GTAC 1 cut(s) 12
EaeI YGGCCR 2 cut(s) 213, 234
Eco130I CCWWGG 2 cut(s) 237, 329
EcoT14I CCWWGG 2 cut(s) 237, 329
ErhI CCWWGG 2 cut(s) 237, 329
Esp3I CGTCTC 1 cut(s) 236
FaeI CATG 2 cut(s) 241, 333
FaiI YATR 6 cut(s) 97, 141, 239, 324, 331, 352
FatI CATG 2 cut(s) 237, 329
Fnu4HI GCNGC 3 cut(s) 30, 213, 291
FokI GGATG 1 cut(s) 324
Fsp4HI GCNGC 3 cut(s) 30, 213, 291
GluI GCNGC 3 cut(s) 30, 213, 291
HaeIII GGCC 3 cut(s) 5, 215, 236
HapII CCGG 1 cut(s) 100
Hin1II CATG 2 cut(s) 241, 333
HinfI GANTC 1 cut(s) 103
HpaII CCGG 1 cut(s) 100
Hpy188I TCNGA 2 cut(s) 115, 300
HpyAV CCTTC 1 cut(s) 284
HpyCH4IV ACGT 2 cut(s) 80, 219
HpyCH4V TGCA 5 cut(s) 29, 119, 139, 293, 337
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 334
HpySE526I ACGT 2 cut(s) 80, 219
Hsp92II CATG 2 cut(s) 241, 333
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 5 cut(s) 113, 143, 210, 241, 294
Lsp1109I GCAGC 2 cut(s) 41, 277
LweI GCATC 2 cut(s) 106, 346
MaeII ACGT 2 cut(s) 80, 219
MaeIII GTNAC 3 cut(s) 91, 121, 190
MlsI TGGCCA 1 cut(s) 236
MluCI AATT 1 cut(s) 163
MluNI TGGCCA 1 cut(s) 236
MnlI CCTC 6 cut(s) 32, 55, 62, 117, 202, 241
Mox20I TGGCCA 1 cut(s) 236
MscI TGGCCA 1 cut(s) 236
Msp20I TGGCCA 1 cut(s) 236
MspI CCGG 1 cut(s) 100
Mva1269I GAATGC 1 cut(s) 307
MwoI GCNNNNNNNGC 2 cut(s) 233, 334
NcoI CCATGG 2 cut(s) 237, 329
NlaIII CATG 2 cut(s) 241, 333
NlaIV GGNNCC 1 cut(s) 146
NmuCI GTSAC 3 cut(s) 91, 121, 190
PctI GAATGC 1 cut(s) 307
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 3 cut(s) 31, 214, 292
PspN4I GGNNCC 1 cut(s) 146
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SatI GCNGC 3 cut(s) 30, 213, 291
ScaI AGTACT 1 cut(s) 13
SfaNI GCATC 2 cut(s) 106, 346
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
Sse9I AATT 1 cut(s) 163
SsiI CCGC 2 cut(s) 212, 341
StyI CCWWGG 2 cut(s) 237, 329
TaiI ACGT 2 cut(s) 83, 222
TaqI TCGA 1 cut(s) 37
TasI AATT 1 cut(s) 163
TatI WGTACW 1 cut(s) 11
TauI GCSGC 1 cut(s) 215
TfiI GAWTC 1 cut(s) 103
TscAI CASTG 1 cut(s) 126
TseFI GTSAC 3 cut(s) 91, 121, 190
TseI GCWGC 2 cut(s) 29, 290
Tsp45I GTSAC 3 cut(s) 91, 121, 190
TspGWI ACGGA 1 cut(s) 260
TspRI CASTG 1 cut(s) 126
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.