Rorug02G0437500

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012900
Physical Location & Seq
Reverse (-)
55896759 .. 55905258
8500 bp
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UTR
Exon/CDS
Intron
Rorug02G0437500.1

Sequence Viewer

Length: 807 bp
ATGCTTCCACCATACTTGCAACCCGGTCCACATGATTTTACCGATGGATCCAACTTCGCTTCGGGTGGAGCCGGGGCCCTTGCAACAACCAACACAGGAACTGTGGCAAGTTTTCCAATGCAGTTGAGTTATTTTAGGAATGTGACAAAGTTGCTACAACAGAAACTGGGTCATTTAGAAGCCAAACGTATTCTGAGAAACGCTGTGTACTTGATTAGCATCGGAGGCTGTGATTATTTCAGCTTCTATGCTACATACCCAAATGCGACCGAGCCCCAGCAAGAGGAATATGTAGCAATCGTGATTGGTAACTTGACCACTGTGCTTCAAGGGATATATAACTTAGGAGGAAGGAAAATTGCATTTCAGAATGTGGGATCTCTTGGGTGCCTACCTGCAATGAGACAAATATTCGGTGTTACTGAAGGGTGCGTTGAAGGACTTCTGAGTTTGGCGAACCTACACAATACAGCTCTAGCTAATGTCCTCAAAGAGTTAGAGAGCCAACTATCAGGATTCAAATATTCAATATTTAACTACTATGATGCGACTGAGGATCGATACCTTAACCCTGCAACATATGGGTTCAAAAATGGGTCGGATGGATGCTGTGGTACAGGACCGTACAGGGGAGTTGATTGTGCAATAGAACCGTTTGAATTATGCGAAGACCCTGGTGAGTATGTGTGGTTTGATGGTGGCCATTCGACTGAAAGGGCAAACTTCCAATATGCAAAGCTAATATGGAGTGGAACCCCGAATACCACAGGGCCTTACAATGTCCAACAGCTTTTTCAGCAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

268

Amino Acids

29.34

Weight (kDa)

5.08

Isoelectric Point (pI)

32.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 11 - 246 2.5e-16 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012900)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04910 AT2G04910
malus_domestica MD09G1143600.v1.1 MD17G1129900.v1.1
prunus_persica Prupe.3G184100_v2.0.a1
pyrus_communis pycom09g06310 pycom17g12250 pycom17g12270
rosa_chinensis RchiOBHm_Chr2g0153201
rosa_laevigata RLG00000020685
rosa_multiflora Rmu_sc0000442.1_g000001
rosa_roxburghii Rroxscaffold_2G00095100
rosa_rugosa Rorug02G0437500
rosa_samantha Rh2AG500400 Rh2BG511800 Rh2CG486600 Rh2DG523800
rosa_wichuraiana Rw2G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 403
AccB1I GGYRCC 1 cut(s) 387
AclWI GGATC 4 cut(s) 42, 55, 385, 564
AcoI YGGCCR 1 cut(s) 700
AcuI CTGAAG 1 cut(s) 444
AfaI GTAC 3 cut(s) 209, 616, 626
AfiI CCNNNNNNNGG 2 cut(s) 283, 629
AgsI TTSAA 6 cut(s) 329, 437, 520, 528, 589, 659
AjnI CCWGG 1 cut(s) 673
AjuI GAANNNNNNNTTGG 1 cut(s) 777
AluBI AGCT 5 cut(s) 243, 473, 479, 739, 790
AluI AGCT 5 cut(s) 243, 473, 479, 739, 790
Alw26I GTCTC 1 cut(s) 397
AlwI GGATC 4 cut(s) 42, 55, 385, 564
AlwNI CAGNNNCTG 2 cut(s) 101, 166
AoxI GGCC 3 cut(s) 75, 700, 770
ApaI GGGCCC 1 cut(s) 79
Asp700I GAANNNNTTC 1 cut(s) 441
AspS9I GGNCC 5 cut(s) 26, 75, 76, 620, 770
AsuC2I CCSGG 2 cut(s) 24, 73
AsuHPI GGTGA 1 cut(s) 689
AvaII GGWCC 2 cut(s) 26, 620
BaeGI GKGCMC 1 cut(s) 79
BalI TGGCCA 1 cut(s) 702
BamHI GGATCC 1 cut(s) 47
BanI GGYRCC 1 cut(s) 387
BanII GRGCYC 2 cut(s) 79, 276
BbsI GAAGAC 1 cut(s) 675
BccI CCATC 3 cut(s) 38, 596, 689
BciT130I CCWGG 1 cut(s) 675
BcnI CCSGG 2 cut(s) 24, 73
BcoDI GTCTC 1 cut(s) 397
BfaI CTAG 1 cut(s) 476
BfuAI ACCTGC 1 cut(s) 403
Bme1390I CCNGG 3 cut(s) 24, 73, 675
Bme18I GGWCC 2 cut(s) 26, 620
BmgT120I GGNCC 5 cut(s) 26, 75, 76, 620, 770
BmiI GGNNCC 6 cut(s) 49, 70, 76, 77, 389, 754
BmrFI CCNGG 3 cut(s) 24, 73, 675
BmrI ACTGGG 1 cut(s) 176
BmsI GCATC 3 cut(s) 228, 535, 596
BmuI ACTGGG 1 cut(s) 176
BpiI GAAGAC 1 cut(s) 675
BpuMI CCSGG 2 cut(s) 24, 73
Bsa29I ATCGAT 1 cut(s) 559
BsaBI GATNNNNATC 1 cut(s) 218
BsaJI CCNNGG 2 cut(s) 72, 673
Bsc4I CCNNNNNNNGG 2 cut(s) 283, 629
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 405
Bse8I GATNNNNATC 1 cut(s) 218
BseBI CCWGG 1 cut(s) 675
BseCI ATCGAT 1 cut(s) 559
BseDI CCNNGG 2 cut(s) 72, 673
BseGI GGATG 2 cut(s) 607, 611
BseJI GATNNNNATC 1 cut(s) 218
BseLI CCNNNNNNNGG 2 cut(s) 283, 629
BseMI GCAATG 1 cut(s) 405
BseMII CTCAG 3 cut(s) 185, 437, 543
BseNI ACTGG 1 cut(s) 171
BseSI GKGCMC 1 cut(s) 79
BseYI CCCAGC 1 cut(s) 276
Bsh1285I CGRYCG 1 cut(s) 270
BshFI GGCC 3 cut(s) 77, 702, 772
BshNI GGYRCC 1 cut(s) 387
BshVI ATCGAT 1 cut(s) 559
BsiEI CGRYCG 1 cut(s) 270
BsiSI CCGG 2 cut(s) 24, 72
BslI CCNNNNNNNGG 2 cut(s) 283, 629
BsmAI GTCTC 1 cut(s) 397
BsnI GGCC 3 cut(s) 77, 702, 772
Bsp120I GGGCCC 1 cut(s) 75
Bsp1286I GDGCHC 2 cut(s) 79, 276
Bsp143I GATC 3 cut(s) 47, 377, 556
BspANI GGCC 3 cut(s) 77, 702, 772
BspCNI CTCAG 3 cut(s) 186, 438, 544
BspDI ATCGAT 1 cut(s) 559
BspLI GGNNCC 6 cut(s) 49, 70, 76, 77, 389, 754
BspMI ACCTGC 1 cut(s) 403
BspPI GGATC 4 cut(s) 42, 55, 385, 564
BspT107I GGYRCC 1 cut(s) 387
BsrDI GCAATG 1 cut(s) 405
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 2 cut(s) 72, 673
BssMI GATC 3 cut(s) 47, 377, 556
Bst2UI CCWGG 1 cut(s) 675
Bst4CI ACNGT 4 cut(s) 103, 322, 624, 654
BstDEI CTNAG 4 cut(s) 194, 343, 446, 552
BstF5I GGATG 2 cut(s) 607, 611
BstKTI GATC 3 cut(s) 50, 380, 559
BstMAI GTCTC 1 cut(s) 397
BstMBI GATC 3 cut(s) 47, 377, 556
BstMCI CGRYCG 1 cut(s) 270
BstMWI GCNNNNNNNGC 2 cut(s) 225, 796
BstNI CCWGG 1 cut(s) 675
BstSCI CCNGG 3 cut(s) 22, 71, 673
BstSLI GKGCMC 1 cut(s) 79
BstV2I GAAGAC 1 cut(s) 675
BstX2I RGATCY 2 cut(s) 47, 377
BstYI RGATCY 2 cut(s) 47, 377
Bsu15I ATCGAT 1 cut(s) 559
BsuRI GGCC 3 cut(s) 77, 702, 772
BsuTUI ATCGAT 1 cut(s) 559
BtsCI GGATG 2 cut(s) 607, 611
BtsIMutI CAGTG 1 cut(s) 318
BveI ACCTGC 1 cut(s) 403
CaiI CAGNNNCTG 2 cut(s) 101, 166
Cfr13I GGNCC 5 cut(s) 26, 75, 76, 620, 770
ClaI ATCGAT 1 cut(s) 559
Csp6I GTAC 3 cut(s) 208, 615, 625
CspCI CAANNNNNGTGG 1 cut(s) 32
CviAII CATG 1 cut(s) 32
CviQI GTAC 3 cut(s) 208, 615, 625
DdeI CTNAG 4 cut(s) 194, 343, 446, 552
DpnI GATC 3 cut(s) 49, 379, 558
DpnII GATC 3 cut(s) 47, 377, 556
EaeI YGGCCR 1 cut(s) 700
Eco24I GRGCYC 2 cut(s) 79, 276
Eco47I GGWCC 2 cut(s) 26, 620
Eco57I CTGAAG 1 cut(s) 444
EcoO109I RGGNCCY 3 cut(s) 75, 76, 770
EcoRII CCWGG 1 cut(s) 673
EcoT38I GRGCYC 2 cut(s) 79, 276
FaeI CATG 1 cut(s) 35
FatI CATG 1 cut(s) 31
FauNDI CATATG 1 cut(s) 580
FokI GGATG 2 cut(s) 614, 618
FriOI GRGCYC 2 cut(s) 79, 276
FspBI CTAG 1 cut(s) 476
GsaI CCCAGC 1 cut(s) 280
HaeIII GGCC 3 cut(s) 77, 702, 772
HapII CCGG 2 cut(s) 24, 72
Hin1II CATG 1 cut(s) 35
HinfI GANTC 1 cut(s) 516
HpaII CCGG 2 cut(s) 24, 72
HphI GGTGA 1 cut(s) 689
Hpy166II GTNNAC 2 cut(s) 29, 208
Hpy188I TCNGA 5 cut(s) 195, 224, 369, 447, 601
Hpy188III TCNNGA 2 cut(s) 301, 513
Hpy8I GTNNAC 2 cut(s) 29, 208
HpyAV CCTTC 3 cut(s) 345, 419, 431
HpyCH4III ACNGT 4 cut(s) 103, 322, 624, 654
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 8 cut(s) 19, 83, 121, 362, 398, 575, 644, 734
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 796
HpyF3I CTNAG 4 cut(s) 194, 343, 446, 552
HpySE526I ACGT 1 cut(s) 187
Hsp92II CATG 1 cut(s) 35
Kzo9I GATC 3 cut(s) 47, 377, 556
LmnI GCTCC 1 cut(s) 68
LweI GCATC 3 cut(s) 228, 535, 596
MaeI CTAG 1 cut(s) 476
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 3 cut(s) 142, 308, 418
MalI GATC 3 cut(s) 49, 379, 558
MboI GATC 3 cut(s) 47, 377, 556
MboII GAAGA 1 cut(s) 680
MflI RGATCY 2 cut(s) 47, 377
MhlI GDGCHC 2 cut(s) 79, 276
MlsI TGGCCA 1 cut(s) 702
MluCI AATT 2 cut(s) 357, 659
MluNI TGGCCA 1 cut(s) 702
MmeI TCCRAC 2 cut(s) 75, 579
MnlI CCTC 5 cut(s) 218, 277, 341, 497, 547
Mox20I TGGCCA 1 cut(s) 702
MroXI GAANNNNTTC 1 cut(s) 441
MscI TGGCCA 1 cut(s) 702
MseI TTAA 2 cut(s) 534, 567
Msp20I TGGCCA 1 cut(s) 702
MspI CCGG 2 cut(s) 24, 72
MspR9I CCNGG 3 cut(s) 24, 73, 675
MvaI CCWGG 1 cut(s) 675
MwoI GCNNNNNNNGC 2 cut(s) 225, 796
NciI CCSGG 2 cut(s) 24, 73
NdeI CATATG 1 cut(s) 580
NdeII GATC 3 cut(s) 47, 377, 556
NlaIII CATG 1 cut(s) 35
NlaIV GGNNCC 6 cut(s) 49, 70, 76, 77, 389, 754
NmuCI GTSAC 1 cut(s) 142
PdmI GAANNNNTTC 1 cut(s) 441
PfeI GAWTC 1 cut(s) 516
Psp6I CCWGG 1 cut(s) 673
PspFI CCCAGC 1 cut(s) 276
PspGI CCWGG 1 cut(s) 673
PspN4I GGNNCC 6 cut(s) 49, 70, 76, 77, 389, 754
PspOMI GGGCCC 1 cut(s) 75
PspPI GGNCC 5 cut(s) 26, 75, 76, 620, 770
PsrI GAACNNNNNNTAC 2 cut(s) 745, 777
PstNI CAGNNNCTG 2 cut(s) 101, 166
PsuI RGATCY 2 cut(s) 47, 377
RsaI GTAC 3 cut(s) 209, 616, 626
RsaNI GTAC 3 cut(s) 208, 615, 625
SaqAI TTAA 2 cut(s) 534, 567
Sau3AI GATC 3 cut(s) 47, 377, 556
Sau96I GGNCC 5 cut(s) 26, 75, 76, 620, 770
ScrFI CCNGG 3 cut(s) 24, 73, 675
SduI GDGCHC 2 cut(s) 79, 276
SetI ASST 9 cut(s) 190, 245, 397, 462, 475, 481, 567, 741, 792
SfaNI GCATC 3 cut(s) 228, 535, 596
SinI GGWCC 2 cut(s) 26, 620
Sse9I AATT 2 cut(s) 357, 659
SspI AATATT 3 cut(s) 411, 524, 531
SspMI CTAG 1 cut(s) 476
StyD4I CCNGG 3 cut(s) 22, 71, 673
TaaI ACNGT 4 cut(s) 103, 322, 624, 654
TaiI ACGT 1 cut(s) 190
TaqI TCGA 2 cut(s) 559, 707
TaqII GACCGA 1 cut(s) 284
TasI AATT 2 cut(s) 357, 659
TatI WGTACW 1 cut(s) 207
TfiI GAWTC 1 cut(s) 516
Tru1I TTAA 2 cut(s) 534, 567
Tru9I TTAA 2 cut(s) 534, 567
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 1 cut(s) 142
Tsp45I GTSAC 1 cut(s) 142
TspRI CASTG 1 cut(s) 325
VpaK11BI GGWCC 2 cut(s) 26, 620
XmnI GAANNNNTTC 1 cut(s) 441
XspI CTAG 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.