MD09G1143600.v1.1

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0012900
Physical Location & Seq
Forward (+)
11187578 .. 11189441
1864 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1143600.v1.1.491

Sequence Viewer

Length: 909 bp
ATGTTTTCTTGGAAGATGACTCGGTTAAGCAAAATATTTCAGACTGGTTTTCTGAGTGTTTTGGAGTTCACAATGTATTGCATGAGATTGAGCATCATACCAATTTTCTACATCTCCATTTCAATCACAACTTTCTCCATTCTATGTGATGCAAGAAGTTTTGCCCAATTCTTTAAACCCCATGACACAAAACTACACAAAAGCAATTCAATCCATGAATTAGAGAAGTACAAGCTGAAAGCAATATATCACCTGGACTTACAATTTCCATTGCCTTCCCCAAATATTGAATTTACACCGTTCGATGCCAGCTCTCCCTCTCCCTCCTCATCACCACCGTTGGATTCACCAGCACCAGGAAATCTCCCTCTTCCAGATCCGTACTCTGTACTCCCACCGATTCCTTCAACCCCACCTCTTACAAATCCTCCTTCATCTGGGCCCACTTCCTCACCCATCCCAAACCCACCACAAAATGGGCCTAGCCCATACCCACCAACCACAACCCCAATCCCGCCCGAAAATTCTCCTATCCCACCCAAATCCATCCCAACCCAACCAATCTCTCTGCCCCCCATAGCTTCCCCTCCGCCGTCCGGGCCACCATCTCCTCCGCACAAAAAGCCACCGCAGTCTGCAGCATGGTGCGTGGCCAACCCAGCGGTGCCGGACCCGATAGTCCAAGAAGCCCTAGACTATGCATGTGGGTCGGGGGCAGACTGCAAGTCAATCCAGCCCAGTGGGTCCTGCTACAAGCCCGACACATTGTTGTCGCATGCTTCGTACGCCTTCAACAGTTACTGGCAGAAGACGAAGGCTGCTGGAGGCACTTGTGATTTTGGAGGGACTGCCATGCTTGTCACAGTTGATCCCAGTTTTGATGGATGCAAATTCTTCTACAAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

303

Amino Acids

32.53

Weight (kDa)

7.56

Isoelectric Point (pI)

66.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 215 - 285 2.4e-23 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012900)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04910 AT2G04910
malus_domestica MD09G1143600.v1.1 MD17G1129900.v1.1
prunus_persica Prupe.3G184100_v2.0.a1
pyrus_communis pycom09g06310 pycom17g12250 pycom17g12270
rosa_chinensis RchiOBHm_Chr2g0153201
rosa_laevigata RLG00000020685
rosa_multiflora Rmu_sc0000442.1_g000001
rosa_roxburghii Rroxscaffold_2G00095100
rosa_rugosa Rorug02G0437500
rosa_samantha Rh2AG500400 Rh2BG511800 Rh2CG486600 Rh2DG523800
rosa_wichuraiana Rw2G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 677
AccB1I GGYRCC 1 cut(s) 664
AccB7I CCANNNNNTGG 1 cut(s) 476
AciI CCGC 5 cut(s) 515, 590, 614, 629, 662
AclWI GGATC 2 cut(s) 371, 863
AcoI YGGCCR 1 cut(s) 651
AcsI RAATTY 3 cut(s) 290, 523, 890
AfaI GTAC 4 cut(s) 230, 383, 390, 785
AfiI CCNNNNNNNGG 4 cut(s) 356, 437, 476, 596
AgsI TTSAA 5 cut(s) 123, 210, 290, 408, 793
AhdI GACNNNNNGTC 1 cut(s) 724
AjnI CCWGG 2 cut(s) 252, 355
AluBI AGCT 3 cut(s) 235, 312, 581
AluI AGCT 3 cut(s) 235, 312, 581
AlwI GGATC 2 cut(s) 371, 863
AlwNI CAGNNNCTG 1 cut(s) 801
AoxI GGCC 4 cut(s) 440, 479, 599, 651
ApaI GGGCCC 1 cut(s) 444
ApeKI GCWGC 2 cut(s) 638, 818
ApoI RAATTY 3 cut(s) 290, 523, 890
AspS9I GGNCC 6 cut(s) 440, 441, 479, 599, 670, 744
AsuC2I CCSGG 1 cut(s) 598
AsuHPI GGTGA 4 cut(s) 242, 324, 339, 444
AvaII GGWCC 2 cut(s) 670, 744
BaeGI GKGCMC 1 cut(s) 444
BalI TGGCCA 1 cut(s) 653
BanI GGYRCC 1 cut(s) 664
BanII GRGCYC 1 cut(s) 444
BbsI GAAGAC 1 cut(s) 815
BbvI GCAGC 2 cut(s) 650, 805
BccI CCATC 4 cut(s) 464, 554, 613, 875
BceAI ACGGC 1 cut(s) 577
BcgI CGANNNNNNTGC 2 cut(s) 690, 724
BciT130I CCWGG 2 cut(s) 254, 357
BcnI CCSGG 1 cut(s) 598
BfaI CTAG 2 cut(s) 483, 692
BfmI CTRYAG 1 cut(s) 636
BglI GCCNNNNNGGC 1 cut(s) 598
BisI GCNGC 2 cut(s) 639, 819
BlsI GCNGC 2 cut(s) 640, 820
Bme1390I CCNGG 3 cut(s) 254, 357, 598
Bme18I GGWCC 2 cut(s) 670, 744
BmeRI GACNNNNNGTC 1 cut(s) 724
BmgT120I GGNCC 6 cut(s) 440, 441, 479, 599, 670, 744
BmiI GGNNCC 4 cut(s) 442, 666, 672, 745
BmrFI CCNGG 3 cut(s) 254, 357, 598
BmrI ACTGGG 2 cut(s) 732, 867
BmsI GCATC 4 cut(s) 102, 139, 295, 875
BmuI ACTGGG 2 cut(s) 732, 867
BpiI GAAGAC 1 cut(s) 815
BpmI CTGGAG 1 cut(s) 843
BpuMI CCSGG 1 cut(s) 598
BsaXI ACNNNNNCTCC 2 cut(s) 412, 442
Bsc4I CCNNNNNNNGG 4 cut(s) 356, 437, 476, 596
Bse1I ACTGG 4 cut(s) 49, 738, 806, 873
Bse3DI GCAATG 1 cut(s) 269
BseBI CCWGG 2 cut(s) 254, 357
BseGI GGATG 3 cut(s) 456, 546, 890
BseLI CCNNNNNNNGG 4 cut(s) 356, 437, 476, 596
BseMI GCAATG 1 cut(s) 269
BseMII CTCAG 1 cut(s) 44
BseNI ACTGG 4 cut(s) 49, 738, 806, 873
BseRI GAGGAG 2 cut(s) 316, 600
BseSI GKGCMC 1 cut(s) 444
BseXI GCAGC 2 cut(s) 650, 805
BseYI CCCAGC 1 cut(s) 658
BshFI GGCC 4 cut(s) 442, 481, 601, 653
BshNI GGYRCC 1 cut(s) 664
BsiSI CCGG 2 cut(s) 597, 668
BsiWI CGTACG 1 cut(s) 783
BslFI GGGAC 1 cut(s) 859
BslI CCNNNNNNNGG 4 cut(s) 356, 437, 476, 596
BsmFI GGGAC 1 cut(s) 859
BsnI GGCC 4 cut(s) 442, 481, 601, 653
Bsp120I GGGCCC 1 cut(s) 440
Bsp1286I GDGCHC 1 cut(s) 444
Bsp143I GATC 2 cut(s) 376, 868
BspACI CCGC 5 cut(s) 515, 590, 614, 629, 662
BspANI GGCC 4 cut(s) 442, 481, 601, 653
BspCNI CTCAG 1 cut(s) 45
BspLI GGNNCC 4 cut(s) 442, 666, 672, 745
BspMAI CTGCAG 1 cut(s) 640
BspPI GGATC 2 cut(s) 371, 863
BspT107I GGYRCC 1 cut(s) 664
BsrDI GCAATG 1 cut(s) 269
BsrI ACTGG 4 cut(s) 49, 738, 806, 873
BssMI GATC 2 cut(s) 376, 868
Bst2UI CCWGG 2 cut(s) 254, 357
Bst4CI ACNGT 4 cut(s) 300, 339, 797, 865
Bst6I CTCTTC 1 cut(s) 375
BstC8I GCNNGC 2 cut(s) 310, 777
BstDEI CTNAG 1 cut(s) 53
BstF5I GGATG 3 cut(s) 456, 546, 890
BstKTI GATC 2 cut(s) 379, 871
BstMBI GATC 2 cut(s) 376, 868
BstMWI GCNNNNNNNGC 4 cut(s) 598, 622, 659, 785
BstNI CCWGG 2 cut(s) 254, 357
BstNSI RCATGY 2 cut(s) 705, 779
BstSCI CCNGG 3 cut(s) 252, 355, 596
BstSFI CTRYAG 1 cut(s) 636
BstSLI GKGCMC 1 cut(s) 444
BstV1I GCAGC 2 cut(s) 650, 805
BstV2I GAAGAC 1 cut(s) 815
BstX2I RGATCY 1 cut(s) 376
BstXI CCANNNNNNTGG 1 cut(s) 740
BstYI RGATCY 1 cut(s) 376
BsuRI GGCC 4 cut(s) 442, 481, 601, 653
BtsCI GGATG 3 cut(s) 456, 546, 890
BtsIMutI CAGTG 1 cut(s) 745
Cac8I GCNNGC 2 cut(s) 310, 777
CaiI CAGNNNCTG 1 cut(s) 801
Cfr13I GGNCC 6 cut(s) 440, 441, 479, 599, 670, 744
Csp6I GTAC 4 cut(s) 229, 382, 389, 784
CviAII CATG 7 cut(s) 82, 182, 215, 642, 702, 776, 853
CviQI GTAC 4 cut(s) 229, 382, 389, 784
DdeI CTNAG 1 cut(s) 53
DpnI GATC 2 cut(s) 378, 870
DpnII GATC 2 cut(s) 376, 868
DraI TTTAAA 1 cut(s) 175
DrdI GACNNNNNNGTC 1 cut(s) 677
DriI GACNNNNNGTC 1 cut(s) 724
DseDI GACNNNNNNGTC 1 cut(s) 677
EaeI YGGCCR 1 cut(s) 651
Eam1104I CTCTTC 1 cut(s) 375
Eam1105I GACNNNNNGTC 1 cut(s) 724
EarI CTCTTC 1 cut(s) 375
EciI GGCGGA 1 cut(s) 579
Eco24I GRGCYC 1 cut(s) 444
Eco47I GGWCC 2 cut(s) 670, 744
EcoO109I RGGNCCY 1 cut(s) 744
EcoRII CCWGG 2 cut(s) 252, 355
EcoT22I ATGCAT 1 cut(s) 703
EcoT38I GRGCYC 1 cut(s) 444
FaeI CATG 7 cut(s) 85, 185, 218, 645, 705, 779, 856
FaqI GGGAC 1 cut(s) 859
FatI CATG 7 cut(s) 81, 181, 214, 641, 701, 775, 852
FauI CCCGC 1 cut(s) 522
Fnu4HI GCNGC 2 cut(s) 639, 819
FokI GGATG 3 cut(s) 443, 533, 897
FriOI GRGCYC 1 cut(s) 444
Fsp4HI GCNGC 2 cut(s) 639, 819
FspBI CTAG 2 cut(s) 483, 692
GluI GCNGC 2 cut(s) 639, 819
GsaI CCCAGC 1 cut(s) 662
GsuI CTGGAG 1 cut(s) 843
HaeIII GGCC 4 cut(s) 442, 481, 601, 653
HapII CCGG 2 cut(s) 597, 668
Hin1II CATG 7 cut(s) 85, 185, 218, 645, 705, 779, 856
HinfI GANTC 3 cut(s) 19, 344, 400
HpaII CCGG 2 cut(s) 597, 668
HphI GGTGA 4 cut(s) 242, 324, 339, 444
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 2 cut(s) 42, 54
Hpy188III TCNNGA 1 cut(s) 374
Hpy8I GTNNAC 1 cut(s) 69
HpyAV CCTTC 5 cut(s) 285, 414, 441, 799, 808
HpyCH4III ACNGT 4 cut(s) 300, 339, 797, 865
HpyCH4V TGCA 6 cut(s) 81, 152, 638, 701, 723, 888
HpyF10VI GCNNNNNNNGC 4 cut(s) 598, 622, 659, 785
HpyF3I CTNAG 1 cut(s) 53
Hsp92II CATG 7 cut(s) 85, 185, 218, 645, 705, 779, 856
Kzo9I GATC 2 cut(s) 376, 868
Lsp1109I GCAGC 2 cut(s) 650, 805
LweI GCATC 4 cut(s) 102, 139, 295, 875
MaeI CTAG 2 cut(s) 483, 692
MaeIII GTNAC 2 cut(s) 797, 859
MalI GATC 2 cut(s) 378, 870
MboI GATC 2 cut(s) 376, 868
MboII GAAGA 4 cut(s) 25, 362, 820, 886
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 1 cut(s) 444
MlsI TGGCCA 1 cut(s) 653
MluCI AATT 8 cut(s) 102, 167, 205, 218, 263, 290, 523, 890
MluNI TGGCCA 1 cut(s) 653
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 321
Mox20I TGGCCA 1 cut(s) 653
Mph1103I ATGCAT 1 cut(s) 703
MscI TGGCCA 1 cut(s) 653
MseI TTAA 2 cut(s) 26, 174
Msp20I TGGCCA 1 cut(s) 653
MspA1I CMGCKG 1 cut(s) 662
MspI CCGG 2 cut(s) 597, 668
MspR9I CCNGG 3 cut(s) 254, 357, 598
MvaI CCWGG 2 cut(s) 254, 357
MwoI GCNNNNNNNGC 4 cut(s) 598, 622, 659, 785
NciI CCSGG 1 cut(s) 598
NdeII GATC 2 cut(s) 376, 868
NlaIII CATG 7 cut(s) 85, 185, 218, 645, 705, 779, 856
NlaIV GGNNCC 4 cut(s) 442, 666, 672, 745
NmuCI GTSAC 1 cut(s) 859
NsiI ATGCAT 1 cut(s) 703
NspI RCATGY 2 cut(s) 705, 779
PaeI GCATGC 1 cut(s) 779
PcsI WCGNNNNNNNCGW 1 cut(s) 779
PfeI GAWTC 2 cut(s) 344, 400
Pfl23II CGTACG 1 cut(s) 783
PflMI CCANNNNNTGG 1 cut(s) 476
PkrI GCNGC 2 cut(s) 640, 820
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 744
Psp5II RGGWCCY 1 cut(s) 744
Psp6I CCWGG 2 cut(s) 252, 355
PspFI CCCAGC 1 cut(s) 658
PspGI CCWGG 2 cut(s) 252, 355
PspLI CGTACG 1 cut(s) 783
PspN4I GGNNCC 4 cut(s) 442, 666, 672, 745
PspOMI GGGCCC 1 cut(s) 440
PspPI GGNCC 6 cut(s) 440, 441, 479, 599, 670, 744
PspPPI RGGWCCY 1 cut(s) 744
PstI CTGCAG 1 cut(s) 640
PstNI CAGNNNCTG 1 cut(s) 801
PsuI RGATCY 1 cut(s) 376
RsaI GTAC 4 cut(s) 230, 383, 390, 785
RsaNI GTAC 4 cut(s) 229, 382, 389, 784
SaqAI TTAA 2 cut(s) 26, 174
SatI GCNGC 2 cut(s) 639, 819
Sau3AI GATC 2 cut(s) 376, 868
Sau96I GGNCC 6 cut(s) 440, 441, 479, 599, 670, 744
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 3 cut(s) 254, 357, 598
SduI GDGCHC 1 cut(s) 444
SetI ASST 5 cut(s) 237, 255, 314, 418, 583
SfaNI GCATC 4 cut(s) 102, 139, 295, 875
SfcI CTRYAG 1 cut(s) 636
SinI GGWCC 2 cut(s) 670, 744
SphI GCATGC 1 cut(s) 779
Sse9I AATT 8 cut(s) 102, 167, 205, 218, 263, 290, 523, 890
SsiI CCGC 5 cut(s) 515, 590, 614, 629, 662
SspI AATATT 2 cut(s) 36, 286
SspMI CTAG 2 cut(s) 483, 692
StyD4I CCNGG 3 cut(s) 252, 355, 596
TaaI ACNGT 4 cut(s) 300, 339, 797, 865
TaqI TCGA 1 cut(s) 303
TasI AATT 8 cut(s) 102, 167, 205, 218, 263, 290, 523, 890
TatI WGTACW 2 cut(s) 228, 388
TfiI GAWTC 2 cut(s) 344, 400
Tru1I TTAA 2 cut(s) 26, 174
Tru9I TTAA 2 cut(s) 26, 174
TscAI CASTG 1 cut(s) 745
TseFI GTSAC 1 cut(s) 859
TseI GCWGC 2 cut(s) 638, 818
Tsp45I GTSAC 1 cut(s) 859
TspDTI ATGAA 2 cut(s) 231, 423
TspGWI ACGGA 1 cut(s) 369
TspRI CASTG 1 cut(s) 745
Van91I CCANNNNNTGG 1 cut(s) 476
VpaK11BI GGWCC 2 cut(s) 670, 744
XapI RAATTY 3 cut(s) 290, 523, 890
XceI RCATGY 2 cut(s) 705, 779
XspI CTAG 2 cut(s) 483, 692
Zsp2I ATGCAT 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.