Rh2DG523800

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0012900
Physical Location & Seq
Reverse (-)
74912590 .. 74913579
990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG523800.1

Sequence Viewer

Length: 990 bp
ATGGAGTCCCTAATACTAATCCTTTACATCCTCATTTCCAGCACTCTATGTGGTAAGCAAGTTACTCCAATACCATTTACTGATATTATTTCACTAACTTTGTGCAAAAATAACACTACTGTCTTTGATCAAATTCTACAACTTTTTTCTATGAATTGTTTTAGAACAGATGCAAGAAGTTTATCCCAAACCCAGAAAGCAGAACAACACAGAAGTACCACTCAAATACTGAAGAAGCTGAAAATAACAAACCACATAGACATACCAGTAGTACAAGCCAGCTCTCCATTTTCTTCTCCACCTTCTGTTTCACCAGCACCAAACCCATTGCCTACTGCAACTGTCCCTCCTAATCTTCCCTATTGTGTAAATCCACAACTACCACCTACTATTTTATCTCCCACATACCCACCTCAAAATGGGCCTAGCCCACACCAACCCTGCATCATTCTAAGCCCACCCAACAATACCCCAACCCAACCCAACATTCCTCTAAGCCCACCCATAAGTCCTCTAAGCCCACCAGCAGTCAATCCCTCCCCTACAGTCAACTCCCCACCACCCACTGGACCCAAAAACACTCCTCCACACACAAAGCCCCAGTCTGGAGTGTGGTGTGTGGCCAAGCCGACCGTGCCCGACCCGATCGTCCAAGCGGCCATGGACTATGCGTGCGGGTCGGGCGCGGACTGCAAGTCAATTCAGCCCAACGGGTCGTGCTACCATCCCGAGACGTTGCTCTCCCATGCGTCGTATGCGTTCAACAATTACTGGCAGAGAAGGAAGGTGGCCGGAGGGACTTGTGATTTTGGAGGGACAGCGATGCTGGTCACTGCTGATCCAAGTAAGTACAATTCATGCAGGCCCGTTCATTTGTATTTATTAGTCTCCATAGTCAACGGGAACCGTCGTTATGTGCATTTATTATACGGTTTTTGGATTCCCCAGAAACCAAATAACACAAACAAGGTCAGCATTTGTAGGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

329

Amino Acids

35.74

Weight (kDa)

9.06

Isoelectric Point (pI)

59.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 205 - 275 1.3e-22 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012900)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04910 AT2G04910
malus_domestica MD09G1143600.v1.1 MD17G1129900.v1.1
prunus_persica Prupe.3G184100_v2.0.a1
pyrus_communis pycom09g06310 pycom17g12250 pycom17g12270
rosa_chinensis RchiOBHm_Chr2g0153201
rosa_laevigata RLG00000020685
rosa_multiflora Rmu_sc0000442.1_g000001
rosa_roxburghii Rroxscaffold_2G00095100
rosa_rugosa Rorug02G0437500
rosa_samantha Rh2AG500400 Rh2BG511800 Rh2CG486600 Rh2DG523800
rosa_wichuraiana Rw2G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 647
AccB7I CCANNNNNTGG 1 cut(s) 566
AccII CGCG 1 cut(s) 686
AciI CCGC 3 cut(s) 656, 675, 686
AclWI GGATC 1 cut(s) 833
AcoI YGGCCR 3 cut(s) 621, 657, 789
AcsI RAATTY 1 cut(s) 132
AcuI CTGAAG 1 cut(s) 251
AfaI GTAC 3 cut(s) 217, 273, 851
AfiI CCNNNNNNNGG 3 cut(s) 419, 566, 605
AgsI TTSAA 1 cut(s) 763
AhdI GACNNNNNGTC 1 cut(s) 694
AjuI GAANNNNNNNTTGG 2 cut(s) 471, 503
AluBI AGCT 2 cut(s) 238, 282
AluI AGCT 2 cut(s) 238, 282
Alw26I GTCTC 2 cut(s) 725, 892
AlwI GGATC 1 cut(s) 833
Ama87I CYCGRG 1 cut(s) 728
AoxI GGCC 5 cut(s) 422, 621, 657, 789, 863
ApoI RAATTY 1 cut(s) 132
ArsI GACNNNNNNTTYG 2 cut(s) 587, 619
AspLEI GCGC 1 cut(s) 686
AspS9I GGNCC 3 cut(s) 422, 569, 864
AsuHPI GGTGA 1 cut(s) 303
AvaI CYCGRG 1 cut(s) 728
AvaII GGWCC 1 cut(s) 569
BaeGI GKGCMC 1 cut(s) 639
BaeI ACNNNNGTAYC 2 cut(s) 199, 232
BalI TGGCCA 1 cut(s) 623
BccI CCATC 1 cut(s) 732
BclI TGATCA 1 cut(s) 127
BcoDI GTCTC 2 cut(s) 725, 892
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 1 cut(s) 543
BisI GCNGC 1 cut(s) 657
BlsI GCNGC 1 cut(s) 658
Bme18I GGWCC 1 cut(s) 569
BmeRI GACNNNNNGTC 1 cut(s) 694
BmeT110I CYCGRG 1 cut(s) 728
BmgT120I GGNCC 3 cut(s) 422, 569, 864
BmiI GGNNCC 2 cut(s) 571, 905
BmrI ACTGGG 1 cut(s) 595
BmsI GCATC 3 cut(s) 160, 453, 813
BmuI ACTGGG 1 cut(s) 595
BpmI CTGGAG 1 cut(s) 627
BsaJI CCNNGG 1 cut(s) 660
BsaXI ACNNNNNCTCC 2 cut(s) 331, 361
Bsc4I CCNNNNNNNGG 3 cut(s) 419, 566, 605
Bse1I ACTGG 4 cut(s) 266, 571, 601, 776
Bse3DI GCAATG 1 cut(s) 326
BseDI CCNNGG 1 cut(s) 660
BseGI GGATG 2 cut(s) 27, 724
BseLI CCNNNNNNNGG 3 cut(s) 419, 566, 605
BseMI GCAATG 1 cut(s) 326
BseNI ACTGG 4 cut(s) 266, 571, 601, 776
BseRI GAGGAG 1 cut(s) 573
BseSI GKGCMC 1 cut(s) 639
Bsh1236I CGCG 1 cut(s) 686
Bsh1285I CGRYCG 2 cut(s) 633, 648
BshFI GGCC 5 cut(s) 424, 623, 659, 791, 865
BsiEI CGRYCG 2 cut(s) 633, 648
BsiHKCI CYCGRG 1 cut(s) 728
BsiSI CCGG 1 cut(s) 792
BslFI GGGAC 3 cut(s) 329, 811, 829
BslI CCNNNNNNNGG 3 cut(s) 419, 566, 605
BsmAI GTCTC 2 cut(s) 725, 892
BsmBI CGTCTC 1 cut(s) 725
BsmFI GGGAC 3 cut(s) 329, 811, 829
BsnI GGCC 5 cut(s) 424, 623, 659, 791, 865
BsoBI CYCGRG 1 cut(s) 728
Bsp1286I GDGCHC 1 cut(s) 639
Bsp143I GATC 3 cut(s) 127, 645, 838
Bsp19I CCATGG 1 cut(s) 660
BspACI CCGC 3 cut(s) 656, 675, 686
BspANI GGCC 5 cut(s) 424, 623, 659, 791, 865
BspFNI CGCG 1 cut(s) 686
BspLI GGNNCC 2 cut(s) 571, 905
BspPI GGATC 1 cut(s) 833
BsrDI GCAATG 1 cut(s) 326
BsrI ACTGG 4 cut(s) 266, 571, 601, 776
BssECI CCNNGG 1 cut(s) 660
BssMI GATC 3 cut(s) 127, 645, 838
BssT1I CCWWGG 1 cut(s) 660
Bst4CI ACNGT 6 cut(s) 121, 343, 547, 634, 908, 932
BstC8I GCNNGC 3 cut(s) 280, 673, 863
BstDEI CTNAG 3 cut(s) 452, 494, 515
BstDSI CCRYGG 1 cut(s) 660
BstF5I GGATG 2 cut(s) 27, 724
BstFNI CGCG 1 cut(s) 686
BstHHI GCGC 1 cut(s) 686
BstKTI GATC 3 cut(s) 130, 648, 841
BstMAI GTCTC 2 cut(s) 725, 892
BstMBI GATC 3 cut(s) 127, 645, 838
BstMCI CGRYCG 2 cut(s) 633, 648
BstMWI GCNNNNNNNGC 4 cut(s) 634, 681, 690, 755
BstSFI CTRYAG 1 cut(s) 543
BstSLI GKGCMC 1 cut(s) 639
BstUI CGCG 1 cut(s) 686
BsuRI GGCC 5 cut(s) 424, 623, 659, 791, 865
BtgI CCRYGG 1 cut(s) 660
BtgZI GCGATG 1 cut(s) 836
BtsCI GGATG 2 cut(s) 27, 724
BtsI GCAGTG 1 cut(s) 831
BtsIMutI CAGTG 2 cut(s) 564, 831
Cac8I GCNNGC 3 cut(s) 280, 673, 863
CfoI GCGC 1 cut(s) 686
Cfr13I GGNCC 3 cut(s) 422, 569, 864
CseI GACGC 1 cut(s) 738
Csp6I GTAC 3 cut(s) 216, 272, 850
CviAII CATG 3 cut(s) 661, 746, 858
CviQI GTAC 3 cut(s) 216, 272, 850
DdeI CTNAG 3 cut(s) 452, 494, 515
DpnI GATC 3 cut(s) 129, 647, 840
DpnII GATC 3 cut(s) 127, 645, 838
DrdI GACNNNNNNGTC 1 cut(s) 647
DriI GACNNNNNGTC 1 cut(s) 694
DseDI GACNNNNNNGTC 1 cut(s) 647
EaeI YGGCCR 3 cut(s) 621, 657, 789
Eam1105I GACNNNNNGTC 1 cut(s) 694
Eco130I CCWWGG 1 cut(s) 660
Eco47I GGWCC 1 cut(s) 569
Eco57I CTGAAG 1 cut(s) 251
Eco88I CYCGRG 1 cut(s) 728
EcoT14I CCWWGG 1 cut(s) 660
ErhI CCWWGG 1 cut(s) 660
Esp3I CGTCTC 1 cut(s) 725
FaeI CATG 3 cut(s) 664, 749, 861
FaqI GGGAC 3 cut(s) 329, 811, 829
FatI CATG 3 cut(s) 660, 745, 857
FauI CCCGC 1 cut(s) 668
FbaI TGATCA 1 cut(s) 127
Fnu4HI GCNGC 1 cut(s) 657
FokI GGATG 2 cut(s) 14, 711
Fsp4HI GCNGC 1 cut(s) 657
FspBI CTAG 1 cut(s) 426
GlaI GCGC 1 cut(s) 685
GluI GCNGC 1 cut(s) 657
GsuI CTGGAG 1 cut(s) 627
HaeIII GGCC 5 cut(s) 424, 623, 659, 791, 865
HapII CCGG 1 cut(s) 792
HgaI GACGC 1 cut(s) 738
HhaI GCGC 1 cut(s) 686
Hin1II CATG 3 cut(s) 664, 749, 861
Hin6I GCGC 1 cut(s) 684
HinP1I GCGC 1 cut(s) 684
HincII GTYRAC 2 cut(s) 550, 898
HindII GTYRAC 2 cut(s) 550, 898
HinfI GANTC 2 cut(s) 5, 940
HpaII CCGG 1 cut(s) 792
HphI GGTGA 1 cut(s) 303
Hpy166II GTNNAC 2 cut(s) 550, 898
Hpy188III TCNNGA 2 cut(s) 606, 728
Hpy8I GTNNAC 2 cut(s) 550, 898
Hpy99I CGWCG 2 cut(s) 754, 912
HpyAV CCTTC 3 cut(s) 312, 774, 778
HpyCH4III ACNGT 6 cut(s) 121, 343, 547, 634, 908, 932
HpyCH4IV ACGT 1 cut(s) 734
HpyCH4V TGCA 7 cut(s) 105, 173, 338, 444, 693, 861, 919
HpyF10VI GCNNNNNNNGC 4 cut(s) 634, 681, 690, 755
HpyF3I CTNAG 3 cut(s) 452, 494, 515
HpySE526I ACGT 1 cut(s) 734
Hsp92II CATG 3 cut(s) 664, 749, 861
HspAI GCGC 1 cut(s) 684
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 3 cut(s) 127, 645, 838
LweI GCATC 3 cut(s) 160, 453, 813
MaeI CTAG 1 cut(s) 426
MaeII ACGT 1 cut(s) 734
MaeIII GTNAC 2 cut(s) 61, 829
MalI GATC 3 cut(s) 129, 647, 840
MboI GATC 3 cut(s) 127, 645, 838
MboII GAAGA 3 cut(s) 244, 285, 347
MhlI GDGCHC 1 cut(s) 639
MlsI TGGCCA 1 cut(s) 623
MluCI AATT 5 cut(s) 132, 154, 699, 766, 853
MluNI TGGCCA 1 cut(s) 623
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 9 cut(s) 41, 357, 423, 501, 522, 547, 594, 788, 806
Mox20I TGGCCA 1 cut(s) 623
MscI TGGCCA 1 cut(s) 623
Msp20I TGGCCA 1 cut(s) 623
MspI CCGG 1 cut(s) 792
MvnI CGCG 1 cut(s) 686
MwoI GCNNNNNNNGC 4 cut(s) 634, 681, 690, 755
NcoI CCATGG 1 cut(s) 660
NdeII GATC 3 cut(s) 127, 645, 838
NlaIII CATG 3 cut(s) 664, 749, 861
NlaIV GGNNCC 2 cut(s) 571, 905
NmuCI GTSAC 1 cut(s) 829
PfeI GAWTC 1 cut(s) 940
PflMI CCANNNNNTGG 1 cut(s) 566
PkrI GCNGC 1 cut(s) 658
Ple19I CGATCG 1 cut(s) 648
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PspN4I GGNNCC 2 cut(s) 571, 905
PspPI GGNCC 3 cut(s) 422, 569, 864
PvuI CGATCG 1 cut(s) 648
RsaI GTAC 3 cut(s) 217, 273, 851
RsaNI GTAC 3 cut(s) 216, 272, 850
SatI GCNGC 1 cut(s) 657
Sau3AI GATC 3 cut(s) 127, 645, 838
Sau96I GGNCC 3 cut(s) 422, 569, 864
SchI GAGTC 1 cut(s) 14
SduI GDGCHC 1 cut(s) 639
SetI ASST 8 cut(s) 240, 284, 304, 388, 415, 737, 789, 972
SfaNI GCATC 3 cut(s) 160, 453, 813
SfcI CTRYAG 1 cut(s) 543
SinI GGWCC 1 cut(s) 569
Sse9I AATT 5 cut(s) 132, 154, 699, 766, 853
SsiI CCGC 3 cut(s) 656, 675, 686
SspMI CTAG 1 cut(s) 426
StyI CCWWGG 1 cut(s) 660
TaaI ACNGT 6 cut(s) 121, 343, 547, 634, 908, 932
TaiI ACGT 1 cut(s) 737
TasI AATT 5 cut(s) 132, 154, 699, 766, 853
TatI WGTACW 2 cut(s) 271, 849
TauI GCSGC 1 cut(s) 659
TfiI GAWTC 1 cut(s) 940
TscAI CASTG 2 cut(s) 571, 838
TseFI GTSAC 1 cut(s) 829
Tsp45I GTSAC 1 cut(s) 829
TspDTI ATGAA 3 cut(s) 167, 846, 860
TspRI CASTG 2 cut(s) 571, 838
Van91I CCANNNNNTGG 1 cut(s) 566
VpaK11BI GGWCC 1 cut(s) 569
XapI RAATTY 1 cut(s) 132
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.