Rroxscaffold_2G00095100

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012900
Physical Location & Seq
Forward (+)
16424403 .. 16429274
4872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00095100.1

Sequence Viewer

Length: 789 bp
ATGGAGTCCCTAATACTAATCCTTTACATCCTCATTTCCACCACAACCTCAAGCACTCTATGTGATGCAAGAAGTTTATCCCAAACCCAGAAAGCAGAACAACACAGAAGTACTACTCAAATACTGAAGAAGCTGAAAGTAACAAACCACATAGACATACCAGTAGTGCAAGCCAGCTCTCCATTTTCTTCTCCACCTTCTGATTCACCAGCACCAAACCCATTGCCTACTGCAGCTGTCCCTCCTAATCTTCCCTACTGTGTAAATCCACAACCACCTACTTCTACTACTACTACTACTACTTTATCTCCCACATACCCACCTCAAAATGGGCCTAGCCCACACCAACCCTGCATCATTCTAAGCCCACCCAACAATACCCCAACCCAACCCAACATTCCTCCAAGCCCACCCATAAGTCCTCTAAGCCCACCAGCAGTCAATCCCTCCCCTACAGTCAACTCCCCACCACCAACTGGACCCAAAAACACTCCTCCACACACAAAGCCCCAGTCTGGAGTGTGGTGTGTAGCCAAGCCGACCGTGCCCGACCCGATAGTCCAAGCGGCCATGGACTACGCATGTGGGTCAGGCGCGGACTGCAAGTCAATCCAGCCCAACGGGTCGTGCTACCAACCGGACACGTTGCTCTCCCATGCATCGTATGCGTTCAACAATTACTGGCAGAGAAGGAAGGTGGCCGGAGGGACTTGTGATTTTGGAGGGACAGCGATGATGGTCACTGCTGATCCAAGTTTCGATGGATGCCAGTTCTTCTACAATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

262

Amino Acids

27.71

Weight (kDa)

7.54

Isoelectric Point (pI)

68.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 175 - 245 3.2e-23 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012900)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04910 AT2G04910
malus_domestica MD09G1143600.v1.1 MD17G1129900.v1.1
prunus_persica Prupe.3G184100_v2.0.a1
pyrus_communis pycom09g06310 pycom17g12250 pycom17g12270
rosa_chinensis RchiOBHm_Chr2g0153201
rosa_laevigata RLG00000020685
rosa_multiflora Rmu_sc0000442.1_g000001
rosa_roxburghii Rroxscaffold_2G00095100
rosa_rugosa Rorug02G0437500
rosa_samantha Rh2AG500400 Rh2BG511800 Rh2CG486600 Rh2DG523800
rosa_wichuraiana Rw2G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 557
AccB7I CCANNNNNTGG 1 cut(s) 476
AccII CGCG 1 cut(s) 596
AciI CCGC 2 cut(s) 566, 596
AclWI GGATC 1 cut(s) 743
AcoI YGGCCR 2 cut(s) 567, 699
AcuI CTGAAG 1 cut(s) 146
AfaI GTAC 1 cut(s) 112
AfiI CCNNNNNNNGG 3 cut(s) 329, 476, 515
AflIII ACRYGT 1 cut(s) 642
AgsI TTSAA 1 cut(s) 673
AhdI GACNNNNNGTC 1 cut(s) 604
AjuI GAANNNNNNNTTGG 2 cut(s) 381, 413
AluBI AGCT 3 cut(s) 133, 177, 236
AluI AGCT 3 cut(s) 133, 177, 236
AlwI GGATC 1 cut(s) 743
AoxI GGCC 3 cut(s) 332, 567, 699
ApeKI GCWGC 1 cut(s) 233
ArsI GACNNNNNNTTYG 2 cut(s) 497, 529
AspLEI GCGC 1 cut(s) 596
AspS9I GGNCC 2 cut(s) 332, 479
AsuHPI GGTGA 1 cut(s) 198
AvaII GGWCC 1 cut(s) 479
BaeGI GKGCMC 1 cut(s) 549
BbvI GCAGC 1 cut(s) 245
BccI CCATC 2 cut(s) 730, 755
BfaI CTAG 1 cut(s) 336
BfmI CTRYAG 2 cut(s) 231, 453
BisI GCNGC 2 cut(s) 234, 567
BlsI GCNGC 2 cut(s) 235, 568
BmcAI AGTACT 1 cut(s) 112
Bme18I GGWCC 1 cut(s) 479
BmeRI GACNNNNNGTC 1 cut(s) 604
BmgT120I GGNCC 2 cut(s) 332, 479
BmiI GGNNCC 1 cut(s) 481
BmrI ACTGGG 1 cut(s) 505
BmsI GCATC 4 cut(s) 55, 363, 668, 755
BmuI ACTGGG 1 cut(s) 505
BpmI CTGGAG 1 cut(s) 537
BpuEI CTTGAG 1 cut(s) 34
BsaJI CCNNGG 1 cut(s) 570
BsaWI WCCGGW 1 cut(s) 637
BsaXI ACNNNNNCTCC 2 cut(s) 292, 322
Bsc4I CCNNNNNNNGG 3 cut(s) 329, 476, 515
Bse1I ACTGG 5 cut(s) 161, 481, 511, 686, 769
Bse3DI GCAATG 1 cut(s) 221
BseDI CCNNGG 1 cut(s) 570
BseGI GGATG 2 cut(s) 27, 770
BseLI CCNNNNNNNGG 3 cut(s) 329, 476, 515
BseMI GCAATG 1 cut(s) 221
BseNI ACTGG 5 cut(s) 161, 481, 511, 686, 769
BseRI GAGGAG 1 cut(s) 483
BseSI GKGCMC 1 cut(s) 549
BseXI GCAGC 1 cut(s) 245
Bsh1236I CGCG 1 cut(s) 596
Bsh1285I CGRYCG 1 cut(s) 543
BshFI GGCC 3 cut(s) 334, 569, 701
BsiEI CGRYCG 1 cut(s) 543
BsiSI CCGG 2 cut(s) 638, 702
BslFI GGGAC 3 cut(s) 224, 721, 739
BslI CCNNNNNNNGG 3 cut(s) 329, 476, 515
BsmFI GGGAC 3 cut(s) 224, 721, 739
BsnI GGCC 3 cut(s) 334, 569, 701
Bsp1286I GDGCHC 1 cut(s) 549
Bsp143I GATC 1 cut(s) 748
Bsp19I CCATGG 1 cut(s) 570
BspACI CCGC 2 cut(s) 566, 596
BspANI GGCC 3 cut(s) 334, 569, 701
BspFNI CGCG 1 cut(s) 596
BspLI GGNNCC 1 cut(s) 481
BspMAI CTGCAG 1 cut(s) 235
BspPI GGATC 1 cut(s) 743
BsrDI GCAATG 1 cut(s) 221
BsrI ACTGG 5 cut(s) 161, 481, 511, 686, 769
BssECI CCNNGG 1 cut(s) 570
BssMI GATC 1 cut(s) 748
BssT1I CCWWGG 1 cut(s) 570
Bst4CI ACNGT 3 cut(s) 260, 457, 544
BstAPI GCANNNNNTGC 1 cut(s) 665
BstC8I GCNNGC 2 cut(s) 171, 175
BstDEI CTNAG 2 cut(s) 362, 425
BstDSI CCRYGG 1 cut(s) 570
BstF5I GGATG 2 cut(s) 27, 770
BstFNI CGCG 1 cut(s) 596
BstHHI GCGC 1 cut(s) 596
BstKTI GATC 1 cut(s) 751
BstMBI GATC 1 cut(s) 748
BstMCI CGRYCG 1 cut(s) 543
BstMWI GCNNNNNNNGC 3 cut(s) 544, 600, 665
BstNSI RCATGY 1 cut(s) 585
BstSFI CTRYAG 2 cut(s) 231, 453
BstSLI GKGCMC 1 cut(s) 549
BstUI CGCG 1 cut(s) 596
BstV1I GCAGC 1 cut(s) 245
BsuRI GGCC 3 cut(s) 334, 569, 701
BtgI CCRYGG 1 cut(s) 570
BtgZI GCGATG 1 cut(s) 746
BtsCI GGATG 2 cut(s) 27, 770
BtsI GCAGTG 1 cut(s) 741
BtsIMutI CAGTG 1 cut(s) 741
Cac8I GCNNGC 2 cut(s) 171, 175
CfoI GCGC 1 cut(s) 596
Cfr13I GGNCC 2 cut(s) 332, 479
Csp6I GTAC 1 cut(s) 111
CviAII CATG 3 cut(s) 571, 582, 656
CviQI GTAC 1 cut(s) 111
DdeI CTNAG 2 cut(s) 362, 425
DpnI GATC 1 cut(s) 750
DpnII GATC 1 cut(s) 748
DrdI GACNNNNNNGTC 1 cut(s) 557
DriI GACNNNNNGTC 1 cut(s) 604
DseDI GACNNNNNNGTC 1 cut(s) 557
EaeI YGGCCR 2 cut(s) 567, 699
Eam1105I GACNNNNNGTC 1 cut(s) 604
Eco130I CCWWGG 1 cut(s) 570
Eco47I GGWCC 1 cut(s) 479
Eco57I CTGAAG 1 cut(s) 146
EcoT14I CCWWGG 1 cut(s) 570
EcoT22I ATGCAT 1 cut(s) 661
ErhI CCWWGG 1 cut(s) 570
FaeI CATG 3 cut(s) 574, 585, 659
FaiI YATR 9 cut(s) 61, 152, 158, 316, 416, 572, 583, 657, 666
FaqI GGGAC 3 cut(s) 224, 721, 739
FatI CATG 3 cut(s) 570, 581, 655
Fnu4HI GCNGC 2 cut(s) 234, 567
FokI GGATG 2 cut(s) 14, 777
Fsp4HI GCNGC 2 cut(s) 234, 567
FspBI CTAG 1 cut(s) 336
GlaI GCGC 1 cut(s) 595
GluI GCNGC 2 cut(s) 234, 567
GsuI CTGGAG 1 cut(s) 537
HaeIII GGCC 3 cut(s) 334, 569, 701
HapII CCGG 2 cut(s) 638, 702
HhaI GCGC 1 cut(s) 596
Hin1II CATG 3 cut(s) 574, 585, 659
Hin6I GCGC 1 cut(s) 594
HinP1I GCGC 1 cut(s) 594
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HinfI GANTC 2 cut(s) 5, 203
HpaII CCGG 2 cut(s) 638, 702
HphI GGTGA 1 cut(s) 198
Hpy166II GTNNAC 1 cut(s) 460
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 1 cut(s) 516
Hpy8I GTNNAC 1 cut(s) 460
HpyAV CCTTC 3 cut(s) 207, 684, 688
HpyCH4III ACNGT 3 cut(s) 260, 457, 544
HpyCH4IV ACGT 1 cut(s) 644
HpyCH4V TGCA 6 cut(s) 68, 169, 233, 354, 603, 659
HpyF10VI GCNNNNNNNGC 3 cut(s) 544, 600, 665
HpyF3I CTNAG 2 cut(s) 362, 425
HpySE526I ACGT 1 cut(s) 644
Hsp92II CATG 3 cut(s) 574, 585, 659
HspAI GCGC 1 cut(s) 594
Kzo9I GATC 1 cut(s) 748
Lsp1109I GCAGC 1 cut(s) 245
LweI GCATC 4 cut(s) 55, 363, 668, 755
MaeI CTAG 1 cut(s) 336
MaeII ACGT 1 cut(s) 644
MaeIII GTNAC 2 cut(s) 139, 739
MalI GATC 1 cut(s) 750
MboI GATC 1 cut(s) 748
MboII GAAGA 4 cut(s) 139, 180, 242, 766
MhlI GDGCHC 1 cut(s) 549
MluCI AATT 1 cut(s) 676
MlyI GAGTC 1 cut(s) 14
Mph1103I ATGCAT 1 cut(s) 661
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 2 cut(s) 638, 702
MvnI CGCG 1 cut(s) 596
MwoI GCNNNNNNNGC 3 cut(s) 544, 600, 665
NcoI CCATGG 1 cut(s) 570
NdeII GATC 1 cut(s) 748
NlaIII CATG 3 cut(s) 574, 585, 659
NlaIV GGNNCC 1 cut(s) 481
NmuCI GTSAC 1 cut(s) 739
NsiI ATGCAT 1 cut(s) 661
NspI RCATGY 1 cut(s) 585
PfeI GAWTC 1 cut(s) 203
PflMI CCANNNNNTGG 1 cut(s) 476
PkrI GCNGC 2 cut(s) 235, 568
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 481
PspPI GGNCC 2 cut(s) 332, 479
PstI CTGCAG 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
SatI GCNGC 2 cut(s) 234, 567
Sau3AI GATC 1 cut(s) 748
Sau96I GGNCC 2 cut(s) 332, 479
ScaI AGTACT 1 cut(s) 112
SchI GAGTC 1 cut(s) 14
SduI GDGCHC 1 cut(s) 549
SetI ASST 9 cut(s) 50, 135, 179, 199, 238, 280, 325, 647, 699
SfaNI GCATC 4 cut(s) 55, 363, 668, 755
SfcI CTRYAG 2 cut(s) 231, 453
SinI GGWCC 1 cut(s) 479
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 1 cut(s) 676
SsiI CCGC 2 cut(s) 566, 596
SspMI CTAG 1 cut(s) 336
StyI CCWWGG 1 cut(s) 570
TaaI ACNGT 3 cut(s) 260, 457, 544
TaiI ACGT 1 cut(s) 647
TaqI TCGA 1 cut(s) 759
TasI AATT 1 cut(s) 676
TatI WGTACW 1 cut(s) 110
TauI GCSGC 1 cut(s) 569
TfiI GAWTC 1 cut(s) 203
TscAI CASTG 1 cut(s) 748
TseFI GTSAC 1 cut(s) 739
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 1 cut(s) 739
TspRI CASTG 1 cut(s) 748
Van91I CCANNNNNTGG 1 cut(s) 476
VpaK11BI GGWCC 1 cut(s) 479
XceI RCATGY 1 cut(s) 585
XspI CTAG 1 cut(s) 336
ZrmI AGTACT 1 cut(s) 112
Zsp2I ATGCAT 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.