AT2G04910

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012900
Physical Location & Seq
Reverse (-)
1723939 .. 1724354
416 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G04910.1

Sequence Viewer

Length: 375 bp
ATGGGGTATCTTATTTTTGTAGCGAAAGCGGAGTTCGGACAATGGTGTGTAGCCGATGGACAGATACCAGATAATGTGATACAAGCAGCCGTAGACTGGGCTTGTCAAACAGGTGGAGCAGACTGCAGTACGATTCAGCCTAACCAGCCTTGCTTCTTGCCCAACACTGTCAAGGACCATGCCTCTGTTGTCTTCAATAACTATTACCAGCGTTATAAGCGCAACGGCGGTTCCTGTAACTTCAACAGCACTGCATTTATCACACAAACCGACCCTAGTAAGCAACTTTATCTAAACCCTTTTTGTTACAGTTATTTAAGCTCTTTGATCAATCAAAATCTTGAACCATCTGTTTCTGATTATCTCATGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

124

Amino Acids

13.86

Weight (kDa)

4.7

Isoelectric Point (pI)

22.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 14 - 85 1e-20 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012900)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04910 AT2G04910
malus_domestica MD09G1143600.v1.1 MD17G1129900.v1.1
prunus_persica Prupe.3G184100_v2.0.a1
pyrus_communis pycom09g06310 pycom17g12250 pycom17g12270
rosa_chinensis RchiOBHm_Chr2g0153201
rosa_laevigata RLG00000020685
rosa_multiflora Rmu_sc0000442.1_g000001
rosa_roxburghii Rroxscaffold_2G00095100
rosa_rugosa Rorug02G0437500
rosa_samantha Rh2AG500400 Rh2BG511800 Rh2CG486600 Rh2DG523800
rosa_wichuraiana Rw2G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 216
AccI GTMKAC 1 cut(s) 93
AciI CCGC 2 cut(s) 29, 228
AfaI GTAC 1 cut(s) 130
AfiI CCNNNNNNNGG 1 cut(s) 96
AgsI TTSAA 3 cut(s) 196, 244, 344
AluBI AGCT 1 cut(s) 321
AluI AGCT 1 cut(s) 321
ApeKI GCWGC 1 cut(s) 86
AspLEI GCGC 1 cut(s) 222
AspS9I GGNCC 1 cut(s) 175
AvaII GGWCC 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 184
BbvI GCAGC 1 cut(s) 98
BccI CCATC 2 cut(s) 50, 355
BceAI ACGGC 2 cut(s) 74, 241
BclI TGATCA 1 cut(s) 327
BfaI CTAG 1 cut(s) 276
BfmI CTRYAG 1 cut(s) 124
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 232
BmrI ACTGGG 1 cut(s) 106
BmuI ACTGGG 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 184
Bsc4I CCNNNNNNNGG 1 cut(s) 96
Bse1I ACTGG 1 cut(s) 101
BseLI CCNNNNNNNGG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 101
BseXI GCAGC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 96
Bsp143I GATC 1 cut(s) 327
BspACI CCGC 2 cut(s) 29, 228
BspHI TCATGA 1 cut(s) 366
BspLI GGNNCC 1 cut(s) 232
BspMAI CTGCAG 1 cut(s) 128
BsrI ACTGG 1 cut(s) 101
BssMI GATC 1 cut(s) 327
Bst4CI ACNGT 2 cut(s) 169, 311
BstHHI GCGC 1 cut(s) 222
BstKTI GATC 1 cut(s) 330
BstMBI GATC 1 cut(s) 327
BstMWI GCNNNNNNNGC 2 cut(s) 145, 217
BstSFI CTRYAG 1 cut(s) 124
BstV1I GCAGC 1 cut(s) 98
BstV2I GAAGAC 1 cut(s) 184
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 2 cut(s) 165, 249
CciI TCATGA 1 cut(s) 366
CfoI GCGC 1 cut(s) 222
Cfr13I GGNCC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 129
CviAII CATG 2 cut(s) 179, 367
CviJI RGCY 6 cut(s) 53, 89, 101, 139, 148, 321
CviKI_1 RGCY 6 cut(s) 53, 89, 101, 139, 148, 321
CviQI GTAC 1 cut(s) 129
DpnI GATC 1 cut(s) 329
DpnII GATC 1 cut(s) 327
Eco47I GGWCC 1 cut(s) 175
FaeI CATG 2 cut(s) 182, 370
FaiI YATR 3 cut(s) 180, 216, 368
FatI CATG 2 cut(s) 178, 366
FbaI TGATCA 1 cut(s) 327
FblI GTMKAC 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 1 cut(s) 276
GlaI GCGC 1 cut(s) 221
GluI GCNGC 1 cut(s) 87
HhaI GCGC 1 cut(s) 222
Hin1II CATG 2 cut(s) 182, 370
Hin6I GCGC 1 cut(s) 220
HinP1I GCGC 1 cut(s) 220
HinfI GANTC 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 2 cut(s) 38, 358
Hpy188III TCNNGA 2 cut(s) 341, 367
Hpy8I GTNNAC 1 cut(s) 94
HpyCH4III ACNGT 2 cut(s) 169, 311
HpyCH4V TGCA 2 cut(s) 126, 254
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 217
Hsp92II CATG 2 cut(s) 182, 370
HspAI GCGC 1 cut(s) 220
Ksp22I TGATCA 1 cut(s) 327
Kzo9I GATC 1 cut(s) 327
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 6 cut(s) 81, 82, 96, 158, 221, 247
Lsp1109I GCAGC 1 cut(s) 98
MaeI CTAG 1 cut(s) 276
MaeIII GTNAC 2 cut(s) 236, 305
MalI GATC 1 cut(s) 329
MboI GATC 1 cut(s) 327
MboII GAAGA 1 cut(s) 184
MnlI CCTC 1 cut(s) 193
MseI TTAA 1 cut(s) 317
MwoI GCNNNNNNNGC 2 cut(s) 145, 217
NdeII GATC 1 cut(s) 327
NlaIII CATG 2 cut(s) 182, 370
NlaIV GGNNCC 1 cut(s) 232
PagI TCATGA 1 cut(s) 366
PfeI GAWTC 1 cut(s) 133
PkrI GCNGC 1 cut(s) 88
PsiI TTATAA 1 cut(s) 216
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 1 cut(s) 175
PstI CTGCAG 1 cut(s) 128
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 1 cut(s) 327
Sau96I GGNCC 1 cut(s) 175
SetI ASST 2 cut(s) 115, 323
SfcI CTRYAG 1 cut(s) 124
SinI GGWCC 1 cut(s) 175
SsiI CCGC 2 cut(s) 29, 228
SspMI CTAG 1 cut(s) 276
TaaI ACNGT 2 cut(s) 169, 311
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TscAI CASTG 2 cut(s) 172, 256
TseI GCWGC 1 cut(s) 86
TspRI CASTG 2 cut(s) 172, 256
VpaK11BI GGWCC 1 cut(s) 175
XmiI GTMKAC 1 cut(s) 93
XspI CTAG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.