RchiOBHm_Chr2g0153201

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0012900
Physical Location & Seq
Reverse (-)
70632179 .. 70634954
2776 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52228

Sequence Viewer

Length: 762 bp
ATGGAGTCCCTAATACTAATCCTTTACATCCTCATTTCCAGCACTCTATGTGATGCAAGAAGTTTATCCCAAACCCAGAAAGCAGAACAACACAGAAGTACCACTCAAATACTGAAGAAGCTGAAAGTAACAAACCACATAGACATACCAGTAGTACAAGCCAGCTCTCCATTTTCTTCTCCACCTTCTGTTTCACCAGCACCAAACCCATTGCCTACTGCAACTGTCCCTCCTAATCTTCCCTATTGTGTAAATCCACAACTACCACCTACTATTTTATCTCCCACATACCCACCTCAAAATGGGCCTAGCCCACACCAACCCTGCATCATTCTAAGCCCACCCAACAATACCCCAACCCAACCCAACATTCCTCTAAGCCCACCCATAAGTCCTCTAAGCCCACCAGCAGTCAATCCCTTCCCTACAGTCAACTCCCCACCACCAACTGGACCCAAAAACACTCCTCCACACACAAAGCCCCAGTCTGGAGTGTGGTGTGTGGCCAAGCCGACCGTGCCCGACCCGATAGTCCAAGCGGCCATGGACTATGCGTGCGGGTCGGGCGCGGACTGCAAGTCAATTCAGCCCAACGGGTCGTGCTACCATCCCGAGACGTTGCTCTCCCATGCGTCGTATGCGTTCAACAATTACTGGCAGAGAAGGAAGGTGGCCGGAGGGACTTGTGATTTTGGAGGGACAGCGATGCTGGTCACTGCTGATCCAAGTTTTGATGGATGCCAGTTCTCCTTCAATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

253

Amino Acids

26.87

Weight (kDa)

8.07

Isoelectric Point (pI)

67.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 166 - 236 8.1e-23 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012900)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04910 AT2G04910
malus_domestica MD09G1143600.v1.1 MD17G1129900.v1.1
prunus_persica Prupe.3G184100_v2.0.a1
pyrus_communis pycom09g06310 pycom17g12250 pycom17g12270
rosa_chinensis RchiOBHm_Chr2g0153201
rosa_laevigata RLG00000020685
rosa_multiflora Rmu_sc0000442.1_g000001
rosa_roxburghii Rroxscaffold_2G00095100
rosa_rugosa Rorug02G0437500
rosa_samantha Rh2AG500400 Rh2BG511800 Rh2CG486600 Rh2DG523800
rosa_wichuraiana Rw2G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 530
AccB7I CCANNNNNTGG 1 cut(s) 449
AccII CGCG 1 cut(s) 569
AciI CCGC 3 cut(s) 539, 558, 569
AclWI GGATC 1 cut(s) 716
AcoI YGGCCR 3 cut(s) 504, 540, 672
AcuI CTGAAG 1 cut(s) 134
AfaI GTAC 2 cut(s) 100, 156
AfiI CCNNNNNNNGG 3 cut(s) 302, 449, 488
AgsI TTSAA 2 cut(s) 646, 754
AhdI GACNNNNNGTC 1 cut(s) 577
AjuI GAANNNNNNNTTGG 2 cut(s) 354, 386
AluBI AGCT 2 cut(s) 121, 165
AluI AGCT 2 cut(s) 121, 165
Alw26I GTCTC 1 cut(s) 608
AlwI GGATC 1 cut(s) 716
Ama87I CYCGRG 1 cut(s) 611
AoxI GGCC 4 cut(s) 305, 504, 540, 672
ArsI GACNNNNNNTTYG 2 cut(s) 470, 502
AspLEI GCGC 1 cut(s) 569
AspS9I GGNCC 2 cut(s) 305, 452
AsuHPI GGTGA 1 cut(s) 186
AvaI CYCGRG 1 cut(s) 611
AvaII GGWCC 1 cut(s) 452
BaeGI GKGCMC 1 cut(s) 522
BaeI ACNNNNGTAYC 2 cut(s) 82, 115
BalI TGGCCA 1 cut(s) 506
BccI CCATC 2 cut(s) 615, 728
BcoDI GTCTC 1 cut(s) 608
BfaI CTAG 1 cut(s) 309
BfmI CTRYAG 1 cut(s) 426
BisI GCNGC 1 cut(s) 540
BlsI GCNGC 1 cut(s) 541
Bme18I GGWCC 1 cut(s) 452
BmeRI GACNNNNNGTC 1 cut(s) 577
BmeT110I CYCGRG 1 cut(s) 611
BmgT120I GGNCC 2 cut(s) 305, 452
BmiI GGNNCC 1 cut(s) 454
BmrI ACTGGG 1 cut(s) 478
BmsI GCATC 4 cut(s) 43, 336, 696, 728
BmuI ACTGGG 1 cut(s) 478
BpmI CTGGAG 1 cut(s) 510
BsaJI CCNNGG 1 cut(s) 543
BsaXI ACNNNNNCTCC 2 cut(s) 214, 244
Bsc4I CCNNNNNNNGG 3 cut(s) 302, 449, 488
Bse1I ACTGG 5 cut(s) 149, 454, 484, 659, 742
Bse3DI GCAATG 1 cut(s) 209
BseDI CCNNGG 1 cut(s) 543
BseGI GGATG 3 cut(s) 27, 607, 743
BseLI CCNNNNNNNGG 3 cut(s) 302, 449, 488
BseMI GCAATG 1 cut(s) 209
BseNI ACTGG 5 cut(s) 149, 454, 484, 659, 742
BseRI GAGGAG 1 cut(s) 456
BseSI GKGCMC 1 cut(s) 522
Bsh1236I CGCG 1 cut(s) 569
Bsh1285I CGRYCG 1 cut(s) 516
BshFI GGCC 4 cut(s) 307, 506, 542, 674
BsiEI CGRYCG 1 cut(s) 516
BsiHKCI CYCGRG 1 cut(s) 611
BsiSI CCGG 1 cut(s) 675
BslFI GGGAC 3 cut(s) 212, 694, 712
BslI CCNNNNNNNGG 3 cut(s) 302, 449, 488
BsmAI GTCTC 1 cut(s) 608
BsmBI CGTCTC 1 cut(s) 608
BsmFI GGGAC 3 cut(s) 212, 694, 712
BsnI GGCC 4 cut(s) 307, 506, 542, 674
BsoBI CYCGRG 1 cut(s) 611
Bsp1286I GDGCHC 1 cut(s) 522
Bsp143I GATC 1 cut(s) 721
Bsp19I CCATGG 1 cut(s) 543
BspACI CCGC 3 cut(s) 539, 558, 569
BspANI GGCC 4 cut(s) 307, 506, 542, 674
BspFNI CGCG 1 cut(s) 569
BspLI GGNNCC 1 cut(s) 454
BspPI GGATC 1 cut(s) 716
BsrDI GCAATG 1 cut(s) 209
BsrI ACTGG 5 cut(s) 149, 454, 484, 659, 742
BssECI CCNNGG 1 cut(s) 543
BssMI GATC 1 cut(s) 721
BssT1I CCWWGG 1 cut(s) 543
Bst4CI ACNGT 3 cut(s) 226, 430, 517
BstC8I GCNNGC 2 cut(s) 163, 556
BstDEI CTNAG 3 cut(s) 335, 377, 398
BstDSI CCRYGG 1 cut(s) 543
BstF5I GGATG 3 cut(s) 27, 607, 743
BstFNI CGCG 1 cut(s) 569
BstHHI GCGC 1 cut(s) 569
BstKTI GATC 1 cut(s) 724
BstMAI GTCTC 1 cut(s) 608
BstMBI GATC 1 cut(s) 721
BstMCI CGRYCG 1 cut(s) 516
BstMWI GCNNNNNNNGC 4 cut(s) 517, 564, 573, 638
BstSFI CTRYAG 1 cut(s) 426
BstSLI GKGCMC 1 cut(s) 522
BstUI CGCG 1 cut(s) 569
BsuRI GGCC 4 cut(s) 307, 506, 542, 674
BtgI CCRYGG 1 cut(s) 543
BtgZI GCGATG 1 cut(s) 719
BtsCI GGATG 3 cut(s) 27, 607, 743
BtsI GCAGTG 1 cut(s) 714
BtsIMutI CAGTG 1 cut(s) 714
Cac8I GCNNGC 2 cut(s) 163, 556
CfoI GCGC 1 cut(s) 569
Cfr13I GGNCC 2 cut(s) 305, 452
CseI GACGC 1 cut(s) 621
Csp6I GTAC 2 cut(s) 99, 155
CviAII CATG 2 cut(s) 544, 629
CviQI GTAC 2 cut(s) 99, 155
DdeI CTNAG 3 cut(s) 335, 377, 398
DpnI GATC 1 cut(s) 723
DpnII GATC 1 cut(s) 721
DrdI GACNNNNNNGTC 1 cut(s) 530
DriI GACNNNNNGTC 1 cut(s) 577
DseDI GACNNNNNNGTC 1 cut(s) 530
EaeI YGGCCR 3 cut(s) 504, 540, 672
Eam1105I GACNNNNNGTC 1 cut(s) 577
Eco130I CCWWGG 1 cut(s) 543
Eco47I GGWCC 1 cut(s) 452
Eco57I CTGAAG 1 cut(s) 134
Eco88I CYCGRG 1 cut(s) 611
EcoT14I CCWWGG 1 cut(s) 543
ErhI CCWWGG 1 cut(s) 543
Esp3I CGTCTC 1 cut(s) 608
FaeI CATG 2 cut(s) 547, 632
FaiI YATR 9 cut(s) 49, 140, 146, 289, 389, 545, 552, 630, 639
FaqI GGGAC 3 cut(s) 212, 694, 712
FatI CATG 2 cut(s) 543, 628
FauI CCCGC 1 cut(s) 551
Fnu4HI GCNGC 1 cut(s) 540
FokI GGATG 3 cut(s) 14, 594, 750
Fsp4HI GCNGC 1 cut(s) 540
FspBI CTAG 1 cut(s) 309
GlaI GCGC 1 cut(s) 568
GluI GCNGC 1 cut(s) 540
GsuI CTGGAG 1 cut(s) 510
HaeIII GGCC 4 cut(s) 307, 506, 542, 674
HapII CCGG 1 cut(s) 675
HgaI GACGC 1 cut(s) 621
HhaI GCGC 1 cut(s) 569
Hin1II CATG 2 cut(s) 547, 632
Hin6I GCGC 1 cut(s) 567
HinP1I GCGC 1 cut(s) 567
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 675
HphI GGTGA 1 cut(s) 186
Hpy166II GTNNAC 1 cut(s) 433
Hpy188III TCNNGA 2 cut(s) 489, 611
Hpy8I GTNNAC 1 cut(s) 433
Hpy99I CGWCG 1 cut(s) 637
HpyAV CCTTC 5 cut(s) 195, 430, 657, 661, 760
HpyCH4III ACNGT 3 cut(s) 226, 430, 517
HpyCH4IV ACGT 1 cut(s) 617
HpyCH4V TGCA 4 cut(s) 56, 221, 327, 576
HpyF10VI GCNNNNNNNGC 4 cut(s) 517, 564, 573, 638
HpyF3I CTNAG 3 cut(s) 335, 377, 398
HpySE526I ACGT 1 cut(s) 617
Hsp92II CATG 2 cut(s) 547, 632
HspAI GCGC 1 cut(s) 567
Kzo9I GATC 1 cut(s) 721
LweI GCATC 4 cut(s) 43, 336, 696, 728
MaeI CTAG 1 cut(s) 309
MaeII ACGT 1 cut(s) 617
MaeIII GTNAC 2 cut(s) 127, 712
MalI GATC 1 cut(s) 723
MboI GATC 1 cut(s) 721
MboII GAAGA 3 cut(s) 127, 168, 230
MhlI GDGCHC 1 cut(s) 522
MlsI TGGCCA 1 cut(s) 506
MluCI AATT 2 cut(s) 582, 649
MluNI TGGCCA 1 cut(s) 506
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 8 cut(s) 41, 240, 306, 384, 405, 477, 671, 689
Mox20I TGGCCA 1 cut(s) 506
MscI TGGCCA 1 cut(s) 506
Msp20I TGGCCA 1 cut(s) 506
MspI CCGG 1 cut(s) 675
MvnI CGCG 1 cut(s) 569
MwoI GCNNNNNNNGC 4 cut(s) 517, 564, 573, 638
NcoI CCATGG 1 cut(s) 543
NdeII GATC 1 cut(s) 721
NlaIII CATG 2 cut(s) 547, 632
NlaIV GGNNCC 1 cut(s) 454
NmuCI GTSAC 1 cut(s) 712
PflMI CCANNNNNTGG 1 cut(s) 449
PkrI GCNGC 1 cut(s) 541
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 454
PspPI GGNCC 2 cut(s) 305, 452
RsaI GTAC 2 cut(s) 100, 156
RsaNI GTAC 2 cut(s) 99, 155
SatI GCNGC 1 cut(s) 540
Sau3AI GATC 1 cut(s) 721
Sau96I GGNCC 2 cut(s) 305, 452
SchI GAGTC 1 cut(s) 14
SduI GDGCHC 1 cut(s) 522
SetI ASST 7 cut(s) 123, 167, 187, 271, 298, 620, 672
SfaNI GCATC 4 cut(s) 43, 336, 696, 728
SfcI CTRYAG 1 cut(s) 426
SinI GGWCC 1 cut(s) 452
Sse9I AATT 2 cut(s) 582, 649
SsiI CCGC 3 cut(s) 539, 558, 569
SspMI CTAG 1 cut(s) 309
StyI CCWWGG 1 cut(s) 543
TaaI ACNGT 3 cut(s) 226, 430, 517
TaiI ACGT 1 cut(s) 620
TasI AATT 2 cut(s) 582, 649
TatI WGTACW 1 cut(s) 154
TauI GCSGC 1 cut(s) 542
TscAI CASTG 1 cut(s) 721
TseFI GTSAC 1 cut(s) 712
Tsp45I GTSAC 1 cut(s) 712
TspRI CASTG 1 cut(s) 721
Van91I CCANNNNNTGG 1 cut(s) 449
VpaK11BI GGWCC 1 cut(s) 452
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.