pycom09g06310

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0012900
Physical Location & Seq
Forward (+)
4657137 .. 4658730
1594 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g06310.1

Sequence Viewer

Length: 894 bp
ATGTTTTCTTGGAAGATGACTCAGTTAAGCAAAACATTTCAGGCTGGTTTTTTTAGTGTTTTGGAGCTCACAATGTATTGCATGAGATTGAGCATCATACCAATTTTCTACATCTCCATTTCAATCACAACTTTCTCCACTCTATGTGATGCAAGAAGTTTTGCCCAATTCTTTAAACTACACAAAAGCAATTCAATCCATGAATTAGAGAAGAACAAGCTGAAAGCAATATATCACTTGGACTTACAATTTCCATTGCCTTCCCCAAATATTGAATTTACACCGTCCGATGCCAGCTCTCCCTCTCCCTCATCATCACCACCGTTGGATTCACGAGCACCAGGAAACCTCCCTCTTCCAGATCCATACTCTGTACTCCCACCCATTCCTTCAACCCCACCTCTTGCAAATCCTCCTTCATCTGGGCCCACTTCCTCACCCATCCCAAACCCACCACAAAATGGGCCTAGCCCATACCCACCAACCACAATCCCACTCCCGCCCAAAAATTCTCCTATCCCACCCAAATCCATCCCAACCCAACCAATCTCTCTGCCCCCTATAGCTTCCCCTCCGCCGTCCGGGCCACCATCTCCTCCGCACAAAAAGCCACCACAGTCTGCAGCGTGGTGCGTGGCCAACCCGGCGGTGCCGGACCCGATAGTCCAAGAAGCCCTAGACTATGCATGTGGGTCAGGGGCGGACTGCAAGTCAATCCAGCCCAGTGGGTCCTGCTACAAGCCCGACACATTGTTGTCGCATGCTTCGTACGCCTTCAACAGTTACTGGCAGAAGACCAAGGAGGCTGGAGGCACTTGTGATTTTGGAGGGACTGCCATGCTTGTCAAAGTGGATCCAAGTTTTGATGGATGCAAATTCTTCTACAAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

298

Amino Acids

31.89

Weight (kDa)

8.35

Isoelectric Point (pI)

67.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 210 - 280 1.5e-23 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012900)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04910 AT2G04910
malus_domestica MD09G1143600.v1.1 MD17G1129900.v1.1
prunus_persica Prupe.3G184100_v2.0.a1
pyrus_communis pycom09g06310 pycom17g12250 pycom17g12270
rosa_chinensis RchiOBHm_Chr2g0153201
rosa_laevigata RLG00000020685
rosa_multiflora Rmu_sc0000442.1_g000001
rosa_roxburghii Rroxscaffold_2G00095100
rosa_rugosa Rorug02G0437500
rosa_samantha Rh2AG500400 Rh2BG511800 Rh2CG486600 Rh2DG523800
rosa_wichuraiana Rw2G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 662
AccB1I GGYRCC 1 cut(s) 649
AccB7I CCANNNNNTGG 1 cut(s) 461
AciI CCGC 5 cut(s) 500, 575, 599, 647, 701
AclWI GGATC 3 cut(s) 356, 848, 861
AcoI YGGCCR 1 cut(s) 636
AcsI RAATTY 3 cut(s) 275, 508, 875
AfaI GTAC 2 cut(s) 375, 770
AfiI CCNNNNNNNGG 3 cut(s) 422, 461, 581
AgsI TTSAA 5 cut(s) 123, 195, 275, 393, 778
AhdI GACNNNNNGTC 1 cut(s) 709
AjnI CCWGG 1 cut(s) 340
AluBI AGCT 4 cut(s) 67, 220, 297, 566
AluI AGCT 4 cut(s) 67, 220, 297, 566
Alw21I GWGCWC 2 cut(s) 69, 340
AlwI GGATC 3 cut(s) 356, 848, 861
AlwNI CAGNNNCTG 1 cut(s) 786
AoxI GGCC 4 cut(s) 425, 464, 584, 636
ApaI GGGCCC 1 cut(s) 429
ApeKI GCWGC 1 cut(s) 623
ApoI RAATTY 3 cut(s) 275, 508, 875
AspS9I GGNCC 6 cut(s) 425, 426, 464, 584, 655, 729
AsuC2I CCSGG 2 cut(s) 583, 644
AsuHPI GGTGA 2 cut(s) 309, 429
AvaII GGWCC 2 cut(s) 655, 729
BaeGI GKGCMC 1 cut(s) 429
BalI TGGCCA 1 cut(s) 638
BamHI GGATCC 1 cut(s) 853
BanI GGYRCC 1 cut(s) 649
BanII GRGCYC 2 cut(s) 69, 429
BauI CACGAG 1 cut(s) 333
BbsI GAAGAC 1 cut(s) 800
Bbv12I GWGCWC 2 cut(s) 69, 340
BbvI GCAGC 1 cut(s) 635
BccI CCATC 4 cut(s) 449, 539, 598, 860
BceAI ACGGC 1 cut(s) 562
BciT130I CCWGG 1 cut(s) 342
BcnI CCSGG 2 cut(s) 583, 644
BfaI CTAG 2 cut(s) 468, 677
BfmI CTRYAG 2 cut(s) 561, 621
BglI GCCNNNNNGGC 2 cut(s) 583, 644
BisI GCNGC 1 cut(s) 624
BlsI GCNGC 1 cut(s) 625
Bme1390I CCNGG 3 cut(s) 342, 583, 644
Bme18I GGWCC 2 cut(s) 655, 729
BmeRI GACNNNNNGTC 1 cut(s) 709
BmgT120I GGNCC 6 cut(s) 425, 426, 464, 584, 655, 729
BmiI GGNNCC 5 cut(s) 427, 651, 657, 730, 855
BmrFI CCNGG 3 cut(s) 342, 583, 644
BmrI ACTGGG 1 cut(s) 717
BmsI GCATC 4 cut(s) 102, 139, 280, 860
BmuI ACTGGG 1 cut(s) 717
BpiI GAAGAC 1 cut(s) 800
BpmI CTGGAG 1 cut(s) 828
BpuMI CCSGG 2 cut(s) 583, 644
BsaJI CCNNGG 1 cut(s) 798
Bsc4I CCNNNNNNNGG 3 cut(s) 422, 461, 581
Bse1I ACTGG 2 cut(s) 723, 791
Bse3DI GCAATG 1 cut(s) 254
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 798
BseGI GGATG 3 cut(s) 441, 531, 875
BseLI CCNNNNNNNGG 3 cut(s) 422, 461, 581
BseMI GCAATG 1 cut(s) 254
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 2 cut(s) 723, 791
BseRI GAGGAG 1 cut(s) 585
BseSI GKGCMC 1 cut(s) 429
BseXI GCAGC 1 cut(s) 635
BshFI GGCC 4 cut(s) 427, 466, 586, 638
BshNI GGYRCC 1 cut(s) 649
BsiHKAI GWGCWC 2 cut(s) 69, 340
BsiSI CCGG 3 cut(s) 582, 644, 653
BsiWI CGTACG 1 cut(s) 768
BslFI GGGAC 1 cut(s) 844
BslI CCNNNNNNNGG 3 cut(s) 422, 461, 581
BsmFI GGGAC 1 cut(s) 844
BsnI GGCC 4 cut(s) 427, 466, 586, 638
Bsp120I GGGCCC 1 cut(s) 425
Bsp1286I GDGCHC 3 cut(s) 69, 340, 429
Bsp143I GATC 2 cut(s) 361, 853
BspACI CCGC 5 cut(s) 500, 575, 599, 647, 701
BspANI GGCC 4 cut(s) 427, 466, 586, 638
BspCNI CTCAG 1 cut(s) 34
BspLI GGNNCC 5 cut(s) 427, 651, 657, 730, 855
BspMAI CTGCAG 1 cut(s) 625
BspPI GGATC 3 cut(s) 356, 848, 861
BspT107I GGYRCC 1 cut(s) 649
BsrDI GCAATG 1 cut(s) 254
BsrI ACTGG 2 cut(s) 723, 791
BssECI CCNNGG 1 cut(s) 798
BssMI GATC 2 cut(s) 361, 853
BssSI CACGAG 1 cut(s) 333
BssT1I CCWWGG 1 cut(s) 798
Bst2BI CACGAG 1 cut(s) 333
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 4 cut(s) 285, 324, 618, 782
Bst6I CTCTTC 1 cut(s) 360
BstC8I GCNNGC 2 cut(s) 295, 762
BstDEI CTNAG 1 cut(s) 21
BstF5I GGATG 3 cut(s) 441, 531, 875
BstKTI GATC 2 cut(s) 364, 856
BstMBI GATC 2 cut(s) 361, 853
BstMWI GCNNNNNNNGC 4 cut(s) 583, 607, 644, 770
BstNI CCWGG 1 cut(s) 342
BstNSI RCATGY 2 cut(s) 690, 764
BstSCI CCNGG 3 cut(s) 340, 581, 642
BstSFI CTRYAG 2 cut(s) 561, 621
BstSLI GKGCMC 1 cut(s) 429
BstV1I GCAGC 1 cut(s) 635
BstV2I GAAGAC 1 cut(s) 800
BstX2I RGATCY 2 cut(s) 361, 853
BstXI CCANNNNNNTGG 1 cut(s) 725
BstYI RGATCY 2 cut(s) 361, 853
BsuRI GGCC 4 cut(s) 427, 466, 586, 638
BtsCI GGATG 3 cut(s) 441, 531, 875
BtsIMutI CAGTG 1 cut(s) 730
Cac8I GCNNGC 2 cut(s) 295, 762
CaiI CAGNNNCTG 1 cut(s) 786
Cfr13I GGNCC 6 cut(s) 425, 426, 464, 584, 655, 729
Csp6I GTAC 2 cut(s) 374, 769
CviAII CATG 5 cut(s) 82, 200, 687, 761, 838
CviQI GTAC 2 cut(s) 374, 769
DdeI CTNAG 1 cut(s) 21
DpnI GATC 2 cut(s) 363, 855
DpnII GATC 2 cut(s) 361, 853
DraI TTTAAA 1 cut(s) 175
DrdI GACNNNNNNGTC 1 cut(s) 662
DriI GACNNNNNGTC 1 cut(s) 709
DseDI GACNNNNNNGTC 1 cut(s) 662
EaeI YGGCCR 1 cut(s) 636
Eam1104I CTCTTC 1 cut(s) 360
Eam1105I GACNNNNNGTC 1 cut(s) 709
EarI CTCTTC 1 cut(s) 360
EciI GGCGGA 2 cut(s) 564, 716
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 798
Eco24I GRGCYC 2 cut(s) 69, 429
Eco47I GGWCC 2 cut(s) 655, 729
Eco53kI GAGCTC 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 67
EcoO109I RGGNCCY 1 cut(s) 729
EcoRII CCWGG 1 cut(s) 340
EcoT14I CCWWGG 1 cut(s) 798
EcoT22I ATGCAT 1 cut(s) 688
EcoT38I GRGCYC 2 cut(s) 69, 429
ErhI CCWWGG 1 cut(s) 798
FaeI CATG 5 cut(s) 85, 203, 690, 764, 841
FaqI GGGAC 1 cut(s) 844
FatI CATG 5 cut(s) 81, 199, 686, 760, 837
FauI CCCGC 1 cut(s) 507
Fnu4HI GCNGC 1 cut(s) 624
FokI GGATG 3 cut(s) 428, 518, 882
FriOI GRGCYC 2 cut(s) 69, 429
Fsp4HI GCNGC 1 cut(s) 624
FspBI CTAG 2 cut(s) 468, 677
GluI GCNGC 1 cut(s) 624
GsuI CTGGAG 1 cut(s) 828
HaeIII GGCC 4 cut(s) 427, 466, 586, 638
HapII CCGG 3 cut(s) 582, 644, 653
Hin1II CATG 5 cut(s) 85, 203, 690, 764, 841
HinfI GANTC 2 cut(s) 19, 329
HpaII CCGG 3 cut(s) 582, 644, 653
HphI GGTGA 2 cut(s) 309, 429
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 2 cut(s) 333, 359
HpyAV CCTTC 4 cut(s) 270, 399, 426, 784
HpyCH4III ACNGT 4 cut(s) 285, 324, 618, 782
HpyCH4V TGCA 7 cut(s) 81, 152, 407, 623, 686, 708, 873
HpyF10VI GCNNNNNNNGC 4 cut(s) 583, 607, 644, 770
HpyF3I CTNAG 1 cut(s) 21
Hsp92II CATG 5 cut(s) 85, 203, 690, 764, 841
Kzo9I GATC 2 cut(s) 361, 853
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 1 cut(s) 635
LweI GCATC 4 cut(s) 102, 139, 280, 860
MaeI CTAG 2 cut(s) 468, 677
MaeIII GTNAC 1 cut(s) 782
MalI GATC 2 cut(s) 363, 855
MboI GATC 2 cut(s) 361, 853
MboII GAAGA 5 cut(s) 25, 223, 347, 805, 871
MflI RGATCY 2 cut(s) 361, 853
MhlI GDGCHC 3 cut(s) 69, 340, 429
MlsI TGGCCA 1 cut(s) 638
MluCI AATT 8 cut(s) 102, 167, 190, 203, 248, 275, 508, 875
MluNI TGGCCA 1 cut(s) 638
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 306
Mox20I TGGCCA 1 cut(s) 638
Mph1103I ATGCAT 1 cut(s) 688
MscI TGGCCA 1 cut(s) 638
MseI TTAA 2 cut(s) 26, 174
Msp20I TGGCCA 1 cut(s) 638
MspI CCGG 3 cut(s) 582, 644, 653
MspR9I CCNGG 3 cut(s) 342, 583, 644
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 4 cut(s) 583, 607, 644, 770
NciI CCSGG 2 cut(s) 583, 644
NdeII GATC 2 cut(s) 361, 853
NlaIII CATG 5 cut(s) 85, 203, 690, 764, 841
NlaIV GGNNCC 5 cut(s) 427, 651, 657, 730, 855
NsiI ATGCAT 1 cut(s) 688
NspI RCATGY 2 cut(s) 690, 764
PaeI GCATGC 1 cut(s) 764
PcsI WCGNNNNNNNCGW 1 cut(s) 764
PfeI GAWTC 1 cut(s) 329
Pfl23II CGTACG 1 cut(s) 768
PflMI CCANNNNNTGG 1 cut(s) 461
PkrI GCNGC 1 cut(s) 625
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 729
Psp124BI GAGCTC 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 729
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspLI CGTACG 1 cut(s) 768
PspN4I GGNNCC 5 cut(s) 427, 651, 657, 730, 855
PspOMI GGGCCC 1 cut(s) 425
PspPI GGNCC 6 cut(s) 425, 426, 464, 584, 655, 729
PspPPI RGGWCCY 1 cut(s) 729
PstI CTGCAG 1 cut(s) 625
PstNI CAGNNNCTG 1 cut(s) 786
PsuI RGATCY 2 cut(s) 361, 853
RsaI GTAC 2 cut(s) 375, 770
RsaNI GTAC 2 cut(s) 374, 769
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 2 cut(s) 26, 174
SatI GCNGC 1 cut(s) 624
Sau3AI GATC 2 cut(s) 361, 853
Sau96I GGNCC 6 cut(s) 425, 426, 464, 584, 655, 729
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 3 cut(s) 342, 583, 644
SduI GDGCHC 3 cut(s) 69, 340, 429
SetI ASST 6 cut(s) 69, 222, 299, 351, 403, 568
SfaNI GCATC 4 cut(s) 102, 139, 280, 860
SfcI CTRYAG 2 cut(s) 561, 621
SinI GGWCC 2 cut(s) 655, 729
SphI GCATGC 1 cut(s) 764
Sse9I AATT 8 cut(s) 102, 167, 190, 203, 248, 275, 508, 875
SsiI CCGC 5 cut(s) 500, 575, 599, 647, 701
SspI AATATT 1 cut(s) 271
SspMI CTAG 2 cut(s) 468, 677
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 3 cut(s) 340, 581, 642
StyI CCWWGG 1 cut(s) 798
TaaI ACNGT 4 cut(s) 285, 324, 618, 782
TasI AATT 8 cut(s) 102, 167, 190, 203, 248, 275, 508, 875
TatI WGTACW 1 cut(s) 373
TfiI GAWTC 1 cut(s) 329
Tru1I TTAA 2 cut(s) 26, 174
Tru9I TTAA 2 cut(s) 26, 174
TscAI CASTG 1 cut(s) 730
TseI GCWGC 1 cut(s) 623
TspDTI ATGAA 2 cut(s) 216, 408
TspRI CASTG 1 cut(s) 730
Van91I CCANNNNNTGG 1 cut(s) 461
VpaK11BI GGWCC 2 cut(s) 655, 729
XapI RAATTY 3 cut(s) 275, 508, 875
XceI RCATGY 2 cut(s) 690, 764
XspI CTAG 2 cut(s) 468, 677
Zsp2I ATGCAT 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.