Rw2G041070

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0012900
Physical Location & Seq
Reverse (-)
66902902 .. 66907759
4858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G041070.1

Sequence Viewer

Length: 741 bp
ATGGAGTCCCTAATACTAATCCTTTACATCCTCATTTCCAGCACTCTATGTGATGCAAGAAGTTTATCCCAAACCCAGAAAGCAGAACAACACAGAAGTACCACTCAAATACTGAAGAAGCTGAAAGTAACAAACCACATAGACATACCAGTAGTACAAGCCAGCTCTCCATTTTCTTCTCCACCTTCTGTTTCACCAGCACCAAACCCATTGCCTACTGCAGCTGTCCCTCCTAATCTTCCCTATTGTGTAAATCCACAACCACCACCTACTATTTTATCTCCCACATACCCACCTCAAAATGGGCCTAGCCCACACCAACCCTGCATCATTCTAAGCCCACCTAACAATACCCCAACCCAACCCATAAGTCCTCTAAGCCCACCAGCAGTCAATCCCTCCCCTGCAGTCAACTCCCCACCACCAACTGGACCCAAAAACACTCCTCCACACACAAAGCCCCAGTTTGGAGTGTGGTGTGTGGCCAAGCCGACCGTGCCCGACCCGATAGTCCAAGCGGCCATGGACTATGCGTGCGGGTCGGGCGCGGACTGCAAGTCAATTCAGCCCAACGGGTCGTGCTACCATCCCGACACGTTGCTCGCCCATGCGTCGTATGCGTTCAACAATTACTGGCAGAGAAGGAAGGTGGCCGGAGGGACTTGTGATTTTGGAGGGACAGCGATGCTGGTCACTGCTGATCCAAGTTTTGATGGATGCCAGTTCTTCTACAATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

246

Amino Acids

26.12

Weight (kDa)

8.06

Isoelectric Point (pI)

65.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 159 - 229 3.8e-23 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012900)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04910 AT2G04910
malus_domestica MD09G1143600.v1.1 MD17G1129900.v1.1
prunus_persica Prupe.3G184100_v2.0.a1
pyrus_communis pycom09g06310 pycom17g12250 pycom17g12270
rosa_chinensis RchiOBHm_Chr2g0153201
rosa_laevigata RLG00000020685
rosa_multiflora Rmu_sc0000442.1_g000001
rosa_roxburghii Rroxscaffold_2G00095100
rosa_rugosa Rorug02G0437500
rosa_samantha Rh2AG500400 Rh2BG511800 Rh2CG486600 Rh2DG523800
rosa_wichuraiana Rw2G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 509
AccB7I CCANNNNNTGG 1 cut(s) 428
AccII CGCG 1 cut(s) 548
AciI CCGC 3 cut(s) 518, 537, 548
AclWI GGATC 1 cut(s) 695
AcoI YGGCCR 3 cut(s) 483, 519, 651
AcuI CTGAAG 1 cut(s) 134
AfaI GTAC 2 cut(s) 100, 156
AfiI CCNNNNNNNGG 3 cut(s) 302, 428, 467
AflIII ACRYGT 1 cut(s) 594
AgsI TTSAA 1 cut(s) 625
AhdI GACNNNNNGTC 1 cut(s) 556
AluBI AGCT 3 cut(s) 121, 165, 224
AluI AGCT 3 cut(s) 121, 165, 224
AlwI GGATC 1 cut(s) 695
AoxI GGCC 4 cut(s) 305, 483, 519, 651
ApeKI GCWGC 1 cut(s) 221
AspLEI GCGC 1 cut(s) 548
AspS9I GGNCC 2 cut(s) 305, 431
AsuHPI GGTGA 1 cut(s) 186
AvaII GGWCC 1 cut(s) 431
BaeGI GKGCMC 1 cut(s) 501
BaeI ACNNNNGTAYC 2 cut(s) 82, 115
BalI TGGCCA 1 cut(s) 485
BbvI GCAGC 1 cut(s) 233
BccI CCATC 2 cut(s) 594, 707
BfaI CTAG 1 cut(s) 309
BfmI CTRYAG 2 cut(s) 219, 405
BisI GCNGC 2 cut(s) 222, 519
BlsI GCNGC 2 cut(s) 223, 520
Bme18I GGWCC 1 cut(s) 431
BmeRI GACNNNNNGTC 1 cut(s) 556
BmgT120I GGNCC 2 cut(s) 305, 431
BmiI GGNNCC 1 cut(s) 433
BmrI ACTGGG 1 cut(s) 457
BmsI GCATC 4 cut(s) 43, 336, 675, 707
BmuI ACTGGG 1 cut(s) 457
BsaJI CCNNGG 1 cut(s) 522
Bsc4I CCNNNNNNNGG 3 cut(s) 302, 428, 467
Bse1I ACTGG 5 cut(s) 149, 433, 463, 638, 721
Bse3DI GCAATG 1 cut(s) 209
BseDI CCNNGG 1 cut(s) 522
BseGI GGATG 3 cut(s) 27, 586, 722
BseLI CCNNNNNNNGG 3 cut(s) 302, 428, 467
BseMI GCAATG 1 cut(s) 209
BseNI ACTGG 5 cut(s) 149, 433, 463, 638, 721
BseRI GAGGAG 1 cut(s) 435
BseSI GKGCMC 1 cut(s) 501
BseXI GCAGC 1 cut(s) 233
Bsh1236I CGCG 1 cut(s) 548
Bsh1285I CGRYCG 1 cut(s) 495
BshFI GGCC 4 cut(s) 307, 485, 521, 653
BsiEI CGRYCG 1 cut(s) 495
BsiSI CCGG 1 cut(s) 654
BslFI GGGAC 3 cut(s) 212, 673, 691
BslI CCNNNNNNNGG 3 cut(s) 302, 428, 467
BsmFI GGGAC 3 cut(s) 212, 673, 691
BsnI GGCC 4 cut(s) 307, 485, 521, 653
Bsp1286I GDGCHC 1 cut(s) 501
Bsp143I GATC 1 cut(s) 700
Bsp19I CCATGG 1 cut(s) 522
BspACI CCGC 3 cut(s) 518, 537, 548
BspANI GGCC 4 cut(s) 307, 485, 521, 653
BspFNI CGCG 1 cut(s) 548
BspLI GGNNCC 1 cut(s) 433
BspMAI CTGCAG 2 cut(s) 223, 409
BspPI GGATC 1 cut(s) 695
BsrDI GCAATG 1 cut(s) 209
BsrI ACTGG 5 cut(s) 149, 433, 463, 638, 721
BssECI CCNNGG 1 cut(s) 522
BssMI GATC 1 cut(s) 700
BssT1I CCWWGG 1 cut(s) 522
Bst4CI ACNGT 1 cut(s) 496
BstC8I GCNNGC 3 cut(s) 163, 535, 603
BstDEI CTNAG 2 cut(s) 335, 377
BstDSI CCRYGG 1 cut(s) 522
BstF5I GGATG 3 cut(s) 27, 586, 722
BstFNI CGCG 1 cut(s) 548
BstHHI GCGC 1 cut(s) 548
BstKTI GATC 1 cut(s) 703
BstMBI GATC 1 cut(s) 700
BstMCI CGRYCG 1 cut(s) 495
BstMWI GCNNNNNNNGC 4 cut(s) 496, 543, 552, 617
BstSFI CTRYAG 2 cut(s) 219, 405
BstSLI GKGCMC 1 cut(s) 501
BstUI CGCG 1 cut(s) 548
BstV1I GCAGC 1 cut(s) 233
BsuRI GGCC 4 cut(s) 307, 485, 521, 653
BtgI CCRYGG 1 cut(s) 522
BtgZI GCGATG 1 cut(s) 698
BtsCI GGATG 3 cut(s) 27, 586, 722
BtsI GCAGTG 1 cut(s) 693
BtsIMutI CAGTG 1 cut(s) 693
Cac8I GCNNGC 3 cut(s) 163, 535, 603
CfoI GCGC 1 cut(s) 548
Cfr13I GGNCC 2 cut(s) 305, 431
CseI GACGC 1 cut(s) 600
Csp6I GTAC 2 cut(s) 99, 155
CviAII CATG 2 cut(s) 523, 608
CviQI GTAC 2 cut(s) 99, 155
DdeI CTNAG 2 cut(s) 335, 377
DpnI GATC 1 cut(s) 702
DpnII GATC 1 cut(s) 700
DrdI GACNNNNNNGTC 1 cut(s) 509
DriI GACNNNNNGTC 1 cut(s) 556
DseDI GACNNNNNNGTC 1 cut(s) 509
EaeI YGGCCR 3 cut(s) 483, 519, 651
Eam1105I GACNNNNNGTC 1 cut(s) 556
Eco130I CCWWGG 1 cut(s) 522
Eco47I GGWCC 1 cut(s) 431
Eco57I CTGAAG 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 522
ErhI CCWWGG 1 cut(s) 522
FaeI CATG 2 cut(s) 526, 611
FaiI YATR 9 cut(s) 49, 140, 146, 289, 368, 524, 531, 609, 618
FaqI GGGAC 3 cut(s) 212, 673, 691
FatI CATG 2 cut(s) 522, 607
FauI CCCGC 1 cut(s) 530
Fnu4HI GCNGC 2 cut(s) 222, 519
FokI GGATG 3 cut(s) 14, 573, 729
Fsp4HI GCNGC 2 cut(s) 222, 519
FspBI CTAG 1 cut(s) 309
GlaI GCGC 1 cut(s) 547
GluI GCNGC 2 cut(s) 222, 519
HaeIII GGCC 4 cut(s) 307, 485, 521, 653
HapII CCGG 1 cut(s) 654
HgaI GACGC 1 cut(s) 600
HhaI GCGC 1 cut(s) 548
Hin1II CATG 2 cut(s) 526, 611
Hin6I GCGC 1 cut(s) 546
HinP1I GCGC 1 cut(s) 546
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 654
HphI GGTGA 1 cut(s) 186
Hpy166II GTNNAC 1 cut(s) 412
Hpy188III TCNNGA 1 cut(s) 590
Hpy8I GTNNAC 1 cut(s) 412
Hpy99I CGWCG 1 cut(s) 616
HpyAV CCTTC 3 cut(s) 195, 636, 640
HpyCH4III ACNGT 1 cut(s) 496
HpyCH4IV ACGT 1 cut(s) 596
HpyCH4V TGCA 5 cut(s) 56, 221, 327, 407, 555
HpyF10VI GCNNNNNNNGC 4 cut(s) 496, 543, 552, 617
HpyF3I CTNAG 2 cut(s) 335, 377
HpySE526I ACGT 1 cut(s) 596
Hsp92II CATG 2 cut(s) 526, 611
HspAI GCGC 1 cut(s) 546
Kzo9I GATC 1 cut(s) 700
Lsp1109I GCAGC 1 cut(s) 233
LweI GCATC 4 cut(s) 43, 336, 675, 707
MaeI CTAG 1 cut(s) 309
MaeII ACGT 1 cut(s) 596
MaeIII GTNAC 2 cut(s) 127, 691
MalI GATC 1 cut(s) 702
MboI GATC 1 cut(s) 700
MboII GAAGA 4 cut(s) 127, 168, 230, 718
MhlI GDGCHC 1 cut(s) 501
MlsI TGGCCA 1 cut(s) 485
MluCI AATT 2 cut(s) 561, 628
MluNI TGGCCA 1 cut(s) 485
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 8 cut(s) 41, 240, 306, 384, 409, 456, 650, 668
Mox20I TGGCCA 1 cut(s) 485
MscI TGGCCA 1 cut(s) 485
Msp20I TGGCCA 1 cut(s) 485
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 1 cut(s) 654
MvnI CGCG 1 cut(s) 548
MwoI GCNNNNNNNGC 4 cut(s) 496, 543, 552, 617
NcoI CCATGG 1 cut(s) 522
NdeII GATC 1 cut(s) 700
NlaIII CATG 2 cut(s) 526, 611
NlaIV GGNNCC 1 cut(s) 433
NmuCI GTSAC 1 cut(s) 691
PflMI CCANNNNNTGG 1 cut(s) 428
PkrI GCNGC 2 cut(s) 223, 520
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 433
PspPI GGNCC 2 cut(s) 305, 431
PstI CTGCAG 2 cut(s) 223, 409
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 2 cut(s) 100, 156
RsaNI GTAC 2 cut(s) 99, 155
SatI GCNGC 2 cut(s) 222, 519
Sau3AI GATC 1 cut(s) 700
Sau96I GGNCC 2 cut(s) 305, 431
SchI GAGTC 1 cut(s) 14
SduI GDGCHC 1 cut(s) 501
SetI ASST 9 cut(s) 123, 167, 187, 226, 271, 298, 346, 599, 651
SfaNI GCATC 4 cut(s) 43, 336, 675, 707
SfcI CTRYAG 2 cut(s) 219, 405
SinI GGWCC 1 cut(s) 431
Sse9I AATT 2 cut(s) 561, 628
SsiI CCGC 3 cut(s) 518, 537, 548
SspMI CTAG 1 cut(s) 309
StyI CCWWGG 1 cut(s) 522
TaaI ACNGT 1 cut(s) 496
TaiI ACGT 1 cut(s) 599
TasI AATT 2 cut(s) 561, 628
TatI WGTACW 1 cut(s) 154
TauI GCSGC 1 cut(s) 521
TscAI CASTG 1 cut(s) 700
TseFI GTSAC 1 cut(s) 691
TseI GCWGC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 691
TspRI CASTG 1 cut(s) 700
Van91I CCANNNNNTGG 1 cut(s) 428
VpaK11BI GGWCC 1 cut(s) 431
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.