RLG00000020685

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012900
Physical Location & Seq
Reverse (-)
67628028 .. 67629846
1819 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020685

Sequence Viewer

Length: 774 bp
ATGGAGTCCCTAATACTAATCCTTTACATCCTCATTTCCACCACAACCTCAAGCAGTCTATGTGATGCAAGAAGTTTATCCCAAACCCAGAAAGCAGAACAACACAGAAGTACTACTCAAATACTGAAGAAGCTGAAAGTAACAAACCACATAGACATACCAGCAGTACAAGCCAGCTCTCCATTTTCTTCTCCACCTTCTGATTCACCAGCACCAAACCCATTGCCTACTGCAGCTGTCCCTCCTAATCTTCCCTATTGTGTAAATCCACAACCACCAACTAGTATTATATCTCCCACATACCCACCTCAACATGGGCCTAGCCCACACCAACCCTGCATCATTCTAAGCCCACCCAACAATACCCCAACCCAACCCAACATTCCTCTAAGCCCACCCATATGTCCTCTAACCCCACCAGCAGTCAATCCCTCCCCTACAGTCAACTCCCCACCACCAGGTGGACCCAAAAACACTCCTCCACACACAAAGCCCCAGTCTGGAGTGTGGTGTGTGGCCAAGCCCACCGTGCCCGACCCGATAGTCCAAGCGGCCATGGACTACGCGTGCGGGTCTGGCGCGGACTGCAAGTCAATCCAGCCCAACGGGTCGTGCTACCAACCCGACACGTTGCTTTCCCATGCATCGTATGCGTTCAACAATTACTGGCAGAGAAGGAAGGTGGCCGGAGGGACATGTGATTTTGGAGGGACAGCGATGGTGGTCACTGCTGATCCAAGTTTTGATGGATGCCAGTTCTTCTACAATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

258

Amino Acids

27.17

Weight (kDa)

7.54

Isoelectric Point (pI)

67.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 170 - 240 3.1e-23 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012900)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04910 AT2G04910
malus_domestica MD09G1143600.v1.1 MD17G1129900.v1.1
prunus_persica Prupe.3G184100_v2.0.a1
pyrus_communis pycom09g06310 pycom17g12250 pycom17g12270
rosa_chinensis RchiOBHm_Chr2g0153201
rosa_laevigata RLG00000020685
rosa_multiflora Rmu_sc0000442.1_g000001
rosa_roxburghii Rroxscaffold_2G00095100
rosa_rugosa Rorug02G0437500
rosa_samantha Rh2AG500400 Rh2BG511800 Rh2CG486600 Rh2DG523800
rosa_wichuraiana Rw2G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 542
AccB7I CCANNNNNTGG 1 cut(s) 461
AccII CGCG 2 cut(s) 566, 581
AciI CCGC 3 cut(s) 551, 570, 581
AclWI GGATC 1 cut(s) 728
AcoI YGGCCR 3 cut(s) 516, 552, 684
AcuI CTGAAG 1 cut(s) 146
AdeI CACNNNGTG 1 cut(s) 461
AfaI GTAC 2 cut(s) 112, 168
AfiI CCNNNNNNNGG 4 cut(s) 314, 458, 461, 500
AflIII ACRYGT 3 cut(s) 564, 627, 695
AgsI TTSAA 1 cut(s) 658
AhdI GACNNNNNGTC 1 cut(s) 589
AhlI ACTAGT 1 cut(s) 281
AjnI CCWGG 1 cut(s) 457
AjuI GAANNNNNNNTTGG 2 cut(s) 366, 398
AluBI AGCT 3 cut(s) 133, 177, 236
AluI AGCT 3 cut(s) 133, 177, 236
AlwI GGATC 1 cut(s) 728
AoxI GGCC 4 cut(s) 317, 516, 552, 684
ApeKI GCWGC 1 cut(s) 233
ArsI GACNNNNNNTTYG 2 cut(s) 482, 514
AspLEI GCGC 1 cut(s) 581
AspS9I GGNCC 2 cut(s) 317, 464
AsuHPI GGTGA 1 cut(s) 198
AvaII GGWCC 1 cut(s) 464
BaeGI GKGCMC 1 cut(s) 534
BalI TGGCCA 1 cut(s) 518
BbvI GCAGC 1 cut(s) 245
BccI CCATC 2 cut(s) 712, 740
BciT130I CCWGG 1 cut(s) 459
BcuI ACTAGT 1 cut(s) 281
BfaI CTAG 2 cut(s) 282, 321
BfmI CTRYAG 2 cut(s) 231, 438
BisI GCNGC 2 cut(s) 234, 552
BlsI GCNGC 2 cut(s) 235, 553
BmcAI AGTACT 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 459
Bme18I GGWCC 1 cut(s) 464
BmeRI GACNNNNNGTC 1 cut(s) 589
BmgT120I GGNCC 2 cut(s) 317, 464
BmiI GGNNCC 1 cut(s) 466
BmrFI CCNGG 1 cut(s) 459
BmrI ACTGGG 1 cut(s) 490
BmsI GCATC 4 cut(s) 55, 348, 653, 740
BmuI ACTGGG 1 cut(s) 490
BpmI CTGGAG 1 cut(s) 522
BpuEI CTTGAG 1 cut(s) 34
BsaJI CCNNGG 1 cut(s) 555
Bsc4I CCNNNNNNNGG 4 cut(s) 314, 458, 461, 500
Bse1I ACTGG 3 cut(s) 496, 671, 754
Bse3DI GCAATG 1 cut(s) 221
BseBI CCWGG 1 cut(s) 459
BseDI CCNNGG 1 cut(s) 555
BseGI GGATG 2 cut(s) 27, 755
BseLI CCNNNNNNNGG 4 cut(s) 314, 458, 461, 500
BseMI GCAATG 1 cut(s) 221
BseNI ACTGG 3 cut(s) 496, 671, 754
BseRI GAGGAG 1 cut(s) 468
BseSI GKGCMC 1 cut(s) 534
BseXI GCAGC 1 cut(s) 245
Bsh1236I CGCG 2 cut(s) 566, 581
BshFI GGCC 4 cut(s) 319, 518, 554, 686
BsiSI CCGG 1 cut(s) 687
BslFI GGGAC 3 cut(s) 224, 706, 724
BslI CCNNNNNNNGG 4 cut(s) 314, 458, 461, 500
BsmFI GGGAC 3 cut(s) 224, 706, 724
BsnI GGCC 4 cut(s) 319, 518, 554, 686
Bsp1286I GDGCHC 1 cut(s) 534
Bsp143I GATC 1 cut(s) 733
Bsp19I CCATGG 1 cut(s) 555
BspACI CCGC 3 cut(s) 551, 570, 581
BspANI GGCC 4 cut(s) 319, 518, 554, 686
BspFNI CGCG 2 cut(s) 566, 581
BspLI GGNNCC 1 cut(s) 466
BspMAI CTGCAG 1 cut(s) 235
BspPI GGATC 1 cut(s) 728
BsrDI GCAATG 1 cut(s) 221
BsrI ACTGG 3 cut(s) 496, 671, 754
BssECI CCNNGG 1 cut(s) 555
BssMI GATC 1 cut(s) 733
BssT1I CCWWGG 1 cut(s) 555
Bst2UI CCWGG 1 cut(s) 459
Bst4CI ACNGT 2 cut(s) 442, 529
BstAPI GCANNNNNTGC 1 cut(s) 650
BstC8I GCNNGC 2 cut(s) 175, 568
BstDEI CTNAG 2 cut(s) 347, 389
BstDSI CCRYGG 1 cut(s) 555
BstF5I GGATG 2 cut(s) 27, 755
BstFNI CGCG 2 cut(s) 566, 581
BstHHI GCGC 1 cut(s) 581
BstKTI GATC 1 cut(s) 736
BstMBI GATC 1 cut(s) 733
BstMWI GCNNNNNNNGC 5 cut(s) 170, 529, 576, 585, 650
BstNI CCWGG 1 cut(s) 459
BstNSI RCATGY 1 cut(s) 699
BstSCI CCNGG 1 cut(s) 457
BstSFI CTRYAG 2 cut(s) 231, 438
BstSLI GKGCMC 1 cut(s) 534
BstUI CGCG 2 cut(s) 566, 581
BstV1I GCAGC 1 cut(s) 245
BsuRI GGCC 4 cut(s) 319, 518, 554, 686
BtgI CCRYGG 1 cut(s) 555
BtgZI GCGATG 1 cut(s) 731
BtsCI GGATG 2 cut(s) 27, 755
BtsI GCAGTG 1 cut(s) 726
BtsIMutI CAGTG 1 cut(s) 726
Cac8I GCNNGC 2 cut(s) 175, 568
CfoI GCGC 1 cut(s) 581
Cfr13I GGNCC 2 cut(s) 317, 464
CsiI ACCWGGT 1 cut(s) 457
Csp6I GTAC 2 cut(s) 111, 167
CviAII CATG 4 cut(s) 314, 556, 641, 696
CviQI GTAC 2 cut(s) 111, 167
DdeI CTNAG 2 cut(s) 347, 389
DpnI GATC 1 cut(s) 735
DpnII GATC 1 cut(s) 733
DraIII CACNNNGTG 1 cut(s) 461
DrdI GACNNNNNNGTC 1 cut(s) 542
DriI GACNNNNNGTC 1 cut(s) 589
DseDI GACNNNNNNGTC 1 cut(s) 542
EaeI YGGCCR 3 cut(s) 516, 552, 684
Eam1105I GACNNNNNGTC 1 cut(s) 589
Eco130I CCWWGG 1 cut(s) 555
Eco47I GGWCC 1 cut(s) 464
Eco57I CTGAAG 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 457
EcoT14I CCWWGG 1 cut(s) 555
EcoT22I ATGCAT 1 cut(s) 646
ErhI CCWWGG 1 cut(s) 555
FaeI CATG 4 cut(s) 317, 559, 644, 699
FaqI GGGAC 3 cut(s) 224, 706, 724
FatI CATG 4 cut(s) 313, 555, 640, 695
FauI CCCGC 1 cut(s) 563
FauNDI CATATG 1 cut(s) 401
Fnu4HI GCNGC 2 cut(s) 234, 552
FokI GGATG 2 cut(s) 14, 762
Fsp4HI GCNGC 2 cut(s) 234, 552
FspBI CTAG 2 cut(s) 282, 321
GlaI GCGC 1 cut(s) 580
GluI GCNGC 2 cut(s) 234, 552
GsuI CTGGAG 1 cut(s) 522
HaeIII GGCC 4 cut(s) 319, 518, 554, 686
HapII CCGG 1 cut(s) 687
HhaI GCGC 1 cut(s) 581
Hin1II CATG 4 cut(s) 317, 559, 644, 699
Hin6I GCGC 1 cut(s) 579
HinP1I GCGC 1 cut(s) 579
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HinfI GANTC 2 cut(s) 5, 203
HpaII CCGG 1 cut(s) 687
HphI GGTGA 1 cut(s) 198
Hpy166II GTNNAC 2 cut(s) 445, 464
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 1 cut(s) 501
Hpy8I GTNNAC 2 cut(s) 445, 464
HpyAV CCTTC 3 cut(s) 207, 669, 673
HpyCH4III ACNGT 2 cut(s) 442, 529
HpyCH4IV ACGT 1 cut(s) 629
HpyCH4V TGCA 5 cut(s) 68, 233, 339, 588, 644
HpyF10VI GCNNNNNNNGC 5 cut(s) 170, 529, 576, 585, 650
HpyF3I CTNAG 2 cut(s) 347, 389
HpySE526I ACGT 1 cut(s) 629
Hsp92II CATG 4 cut(s) 317, 559, 644, 699
HspAI GCGC 1 cut(s) 579
Kzo9I GATC 1 cut(s) 733
Lsp1109I GCAGC 1 cut(s) 245
LweI GCATC 4 cut(s) 55, 348, 653, 740
MabI ACCWGGT 1 cut(s) 457
MaeI CTAG 2 cut(s) 282, 321
MaeII ACGT 1 cut(s) 629
MaeIII GTNAC 2 cut(s) 139, 724
MalI GATC 1 cut(s) 735
MboI GATC 1 cut(s) 733
MboII GAAGA 4 cut(s) 139, 180, 242, 751
MhlI GDGCHC 1 cut(s) 534
MlsI TGGCCA 1 cut(s) 518
MluCI AATT 1 cut(s) 661
MluI ACGCGT 1 cut(s) 564
MluNI TGGCCA 1 cut(s) 518
MlyI GAGTC 1 cut(s) 14
Mox20I TGGCCA 1 cut(s) 518
Mph1103I ATGCAT 1 cut(s) 646
MscI TGGCCA 1 cut(s) 518
MslI CAYNNNNRTG 1 cut(s) 400
Msp20I TGGCCA 1 cut(s) 518
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 1 cut(s) 687
MspR9I CCNGG 1 cut(s) 459
MvaI CCWGG 1 cut(s) 459
MvnI CGCG 2 cut(s) 566, 581
MwoI GCNNNNNNNGC 5 cut(s) 170, 529, 576, 585, 650
NcoI CCATGG 1 cut(s) 555
NdeI CATATG 1 cut(s) 401
NdeII GATC 1 cut(s) 733
NlaIII CATG 4 cut(s) 317, 559, 644, 699
NlaIV GGNNCC 1 cut(s) 466
NmuCI GTSAC 1 cut(s) 724
NsiI ATGCAT 1 cut(s) 646
NspI RCATGY 1 cut(s) 699
PciI ACATGT 1 cut(s) 695
PfeI GAWTC 1 cut(s) 203
PflMI CCANNNNNTGG 1 cut(s) 461
PkrI GCNGC 2 cut(s) 235, 553
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PscI ACATGT 1 cut(s) 695
Psp6I CCWGG 1 cut(s) 457
PspGI CCWGG 1 cut(s) 457
PspN4I GGNNCC 1 cut(s) 466
PspPI GGNCC 2 cut(s) 317, 464
PstI CTGCAG 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 2 cut(s) 112, 168
RsaNI GTAC 2 cut(s) 111, 167
RseI CAYNNNNRTG 1 cut(s) 400
SatI GCNGC 2 cut(s) 234, 552
Sau3AI GATC 1 cut(s) 733
Sau96I GGNCC 2 cut(s) 317, 464
ScaI AGTACT 1 cut(s) 112
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 459
SduI GDGCHC 1 cut(s) 534
SetI ASST 9 cut(s) 50, 135, 179, 199, 238, 310, 463, 632, 684
SexAI ACCWGGT 1 cut(s) 457
SfaNI GCATC 4 cut(s) 55, 348, 653, 740
SfcI CTRYAG 2 cut(s) 231, 438
SinI GGWCC 1 cut(s) 464
SmiMI CAYNNNNRTG 1 cut(s) 400
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
SpeI ACTAGT 1 cut(s) 281
Sse9I AATT 1 cut(s) 661
SsiI CCGC 3 cut(s) 551, 570, 581
SspMI CTAG 2 cut(s) 282, 321
StyD4I CCNGG 1 cut(s) 457
StyI CCWWGG 1 cut(s) 555
TaaI ACNGT 2 cut(s) 442, 529
TaiI ACGT 1 cut(s) 632
TasI AATT 1 cut(s) 661
TatI WGTACW 2 cut(s) 110, 166
TauI GCSGC 1 cut(s) 554
TfiI GAWTC 1 cut(s) 203
TscAI CASTG 1 cut(s) 733
TseFI GTSAC 1 cut(s) 724
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 1 cut(s) 724
TspRI CASTG 1 cut(s) 733
Van91I CCANNNNNTGG 1 cut(s) 461
VpaK11BI GGWCC 1 cut(s) 464
XceI RCATGY 1 cut(s) 699
XspI CTAG 2 cut(s) 282, 321
ZrmI AGTACT 1 cut(s) 112
Zsp2I ATGCAT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.