MD17G1129900.v1.1

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0012900
Physical Location & Seq
Forward (+)
11435996 .. 11437208
1213 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1129900.v1.1.491

Sequence Viewer

Length: 828 bp
ATGTATCGCATGCGATTGAGCATCATACCAATTTTCTACATCTCCATTTCAATCACTACTTTCTCCATTCTATGTGATGCAAGAAGTTTTGCGCAATTCTTTAAACCCCAAGACACAAAACTACACAAAAGCAAATCAATCCATGAATTAGAGAAGAACAAGCTGAAAGCAATAAATCACTTGGACTTACATTTTGCGTTGGCTTCCCCAAATATTGAATTCCAACCGTTCGATGCCAGCTCTCCCTTCTCATCACCACCGTTGGATTCACCAGCACCGGGACATCTCCCTCTTCCAGCTCCAAACTCCGTATCCCCACCAATTCCTCCAAACCCACCTCTTGCAAATCCTCCTCCATCTGGGCCCACTTCCTCACCCATCCCAAGCCCACCACAAAATGGGCCTAGCCCACACCCACCAACCACAATCCCAACCCCACCCAAATCAGTCCTGAGCCCACCAGTCCTTCCGCCGCCAATAGCTTTCCCTCCACCGTCCGGACCGCCATCCCCTCCGCAGAAAAAGCCACCGCAGTTTGCCGTGTGGTGCGTGGTGAAGCCGACAGTGCCGGACCCGATAATCCAAGAAGCCCTGGACTATGCGTGTGGGTCCGGGGCAGACTGCAAGTCAATCCGGCCCAATGGGTCCTGCTACCAGCCCGACACATTGTTGTCGCATGCTTCGTATGCCTTCAATAGTTACTGGCAGAACACGAAGATCGCTGGAGGCACTTGTGACTTTGGAGGGACTGCCATGCTTGTCACAGTTGATCCAAGTAAGTCCAAATTTTTCCCATATCAAGATATATTTTTGGCATATTGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

276

Amino Acids

29.62

Weight (kDa)

8.42

Isoelectric Point (pI)

67.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 182 - 252 3.5e-23 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012900)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04910 AT2G04910
malus_domestica MD09G1143600.v1.1 MD17G1129900.v1.1
prunus_persica Prupe.3G184100_v2.0.a1
pyrus_communis pycom09g06310 pycom17g12250 pycom17g12270
rosa_chinensis RchiOBHm_Chr2g0153201
rosa_laevigata RLG00000020685
rosa_multiflora Rmu_sc0000442.1_g000001
rosa_roxburghii Rroxscaffold_2G00095100
rosa_rugosa Rorug02G0437500
rosa_samantha Rh2AG500400 Rh2BG511800 Rh2CG486600 Rh2DG523800
rosa_wichuraiana Rw2G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 93
AccB7I CCANNNNNTGG 1 cut(s) 398
AccIII TCCGGA 1 cut(s) 497
AciI CCGC 5 cut(s) 470, 473, 503, 515, 530
AclWI GGATC 1 cut(s) 764
AcsI RAATTY 2 cut(s) 218, 785
AfiI CCNNNNNNNGG 4 cut(s) 278, 359, 398, 497
AgsI TTSAA 3 cut(s) 51, 218, 694
AhdI GACNNNNNGTC 1 cut(s) 625
AjnI CCWGG 1 cut(s) 591
AluBI AGCT 4 cut(s) 163, 240, 299, 482
AluI AGCT 4 cut(s) 163, 240, 299, 482
AlwI GGATC 1 cut(s) 764
Aor13HI TCCGGA 1 cut(s) 497
AoxI GGCC 3 cut(s) 362, 401, 635
ApaI GGGCCC 1 cut(s) 366
ApoI RAATTY 2 cut(s) 218, 785
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
AspLEI GCGC 1 cut(s) 94
AspS9I GGNCC 8 cut(s) 362, 363, 401, 500, 571, 609, 636, 645
AsuC2I CCSGG 2 cut(s) 279, 613
AsuHPI GGTGA 4 cut(s) 246, 261, 366, 565
AvaII GGWCC 4 cut(s) 500, 571, 609, 645
BaeGI GKGCMC 1 cut(s) 366
BanII GRGCYC 2 cut(s) 366, 458
BccI CCATC 3 cut(s) 364, 386, 514
BceAI ACGGC 1 cut(s) 524
BciT130I CCWGG 1 cut(s) 593
BciVI GTATCC 1 cut(s) 322
BcnI CCSGG 2 cut(s) 279, 613
BfaI CTAG 1 cut(s) 405
BfuI GTATCC 1 cut(s) 322
BisI GCNGC 1 cut(s) 473
BlsI GCNGC 1 cut(s) 474
Bme1390I CCNGG 3 cut(s) 279, 593, 613
Bme18I GGWCC 4 cut(s) 500, 571, 609, 645
BmeRI GACNNNNNGTC 1 cut(s) 625
BmgT120I GGNCC 8 cut(s) 362, 363, 401, 500, 571, 609, 636, 645
BmiI GGNNCC 4 cut(s) 364, 573, 610, 646
BmrFI CCNGG 3 cut(s) 279, 593, 613
BmsI GCATC 3 cut(s) 30, 67, 223
BpmI CTGGAG 1 cut(s) 744
Bpu10I CCTNAGC 1 cut(s) 452
BpuMI CCSGG 2 cut(s) 279, 613
BsaJI CCNNGG 2 cut(s) 591, 612
BsaWI WCCGGW 1 cut(s) 497
Bsc4I CCNNNNNNNGG 4 cut(s) 278, 359, 398, 497
Bse1I ACTGG 2 cut(s) 461, 707
BseAI TCCGGA 1 cut(s) 497
BseBI CCWGG 1 cut(s) 593
BseDI CCNNGG 2 cut(s) 591, 612
BseGI GGATG 2 cut(s) 378, 506
BseLI CCNNNNNNNGG 4 cut(s) 278, 359, 398, 497
BseMII CTCAG 1 cut(s) 443
BseNI ACTGG 2 cut(s) 461, 707
BseRI GAGGAG 1 cut(s) 342
BseSI GKGCMC 1 cut(s) 366
BshFI GGCC 3 cut(s) 364, 403, 637
BsiSI CCGG 5 cut(s) 278, 498, 569, 612, 634
BslFI GGGAC 2 cut(s) 294, 760
BslI CCNNNNNNNGG 4 cut(s) 278, 359, 398, 497
BsmFI GGGAC 2 cut(s) 294, 760
BsnI GGCC 3 cut(s) 364, 403, 637
Bsp120I GGGCCC 1 cut(s) 362
Bsp1286I GDGCHC 2 cut(s) 366, 458
Bsp13I TCCGGA 1 cut(s) 497
Bsp143I GATC 2 cut(s) 717, 769
BspACI CCGC 5 cut(s) 470, 473, 503, 515, 530
BspANI GGCC 3 cut(s) 364, 403, 637
BspCNI CTCAG 1 cut(s) 444
BspEI TCCGGA 1 cut(s) 497
BspLI GGNNCC 4 cut(s) 364, 573, 610, 646
BspPI GGATC 1 cut(s) 764
BsrI ACTGG 2 cut(s) 461, 707
BssECI CCNNGG 2 cut(s) 591, 612
BssMI GATC 2 cut(s) 717, 769
Bst2UI CCWGG 1 cut(s) 593
Bst4CI ACNGT 5 cut(s) 228, 261, 495, 565, 766
Bst6I CTCTTC 1 cut(s) 297
BstC8I GCNNGC 3 cut(s) 11, 238, 678
BstDEI CTNAG 1 cut(s) 452
BstF5I GGATG 2 cut(s) 378, 506
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 2 cut(s) 720, 772
BstMBI GATC 2 cut(s) 717, 769
BstMWI GCNNNNNNNGC 3 cut(s) 523, 565, 686
BstNI CCWGG 1 cut(s) 593
BstNSI RCATGY 2 cut(s) 13, 680
BstSCI CCNGG 3 cut(s) 277, 591, 611
BstSLI GKGCMC 1 cut(s) 366
BsuI GTATCC 1 cut(s) 322
BsuRI GGCC 3 cut(s) 364, 403, 637
BtsCI GGATG 2 cut(s) 378, 506
BtsIMutI CAGTG 1 cut(s) 570
Cac8I GCNNGC 3 cut(s) 11, 238, 678
CfoI GCGC 1 cut(s) 94
Cfr13I GGNCC 8 cut(s) 362, 363, 401, 500, 571, 609, 636, 645
CpoI CGGWCCG 1 cut(s) 500
CspI CGGWCCG 1 cut(s) 500
CviAII CATG 4 cut(s) 10, 143, 677, 754
DdeI CTNAG 1 cut(s) 452
DpnI GATC 2 cut(s) 719, 771
DpnII GATC 2 cut(s) 717, 769
DraI TTTAAA 1 cut(s) 103
DriI GACNNNNNGTC 1 cut(s) 625
Eam1104I CTCTTC 1 cut(s) 297
Eam1105I GACNNNNNGTC 1 cut(s) 625
EarI CTCTTC 1 cut(s) 297
EciI GGCGGA 1 cut(s) 459
Eco24I GRGCYC 2 cut(s) 366, 458
Eco47I GGWCC 4 cut(s) 500, 571, 609, 645
EcoO109I RGGNCCY 1 cut(s) 645
EcoRI GAATTC 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 591
EcoT38I GRGCYC 2 cut(s) 366, 458
FaeI CATG 4 cut(s) 13, 146, 680, 757
FaqI GGGAC 2 cut(s) 294, 760
FatI CATG 4 cut(s) 9, 142, 676, 753
Fnu4HI GCNGC 1 cut(s) 473
FokI GGATG 2 cut(s) 365, 493
FriOI GRGCYC 2 cut(s) 366, 458
Fsp4HI GCNGC 1 cut(s) 473
FspBI CTAG 1 cut(s) 405
FspI TGCGCA 1 cut(s) 93
GlaI GCGC 1 cut(s) 93
GluI GCNGC 1 cut(s) 473
GsuI CTGGAG 1 cut(s) 744
HaeIII GGCC 3 cut(s) 364, 403, 637
HapII CCGG 5 cut(s) 278, 498, 569, 612, 634
HhaI GCGC 1 cut(s) 94
Hin1II CATG 4 cut(s) 13, 146, 680, 757
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HinfI GANTC 1 cut(s) 266
HpaII CCGG 5 cut(s) 278, 498, 569, 612, 634
HphI GGTGA 4 cut(s) 246, 261, 366, 565
Hpy188III TCNNGA 3 cut(s) 451, 498, 800
HpyAV CCTTC 3 cut(s) 256, 476, 700
HpyCH4III ACNGT 5 cut(s) 228, 261, 495, 565, 766
HpyCH4V TGCA 4 cut(s) 80, 344, 624, 822
HpyF10VI GCNNNNNNNGC 3 cut(s) 523, 565, 686
HpyF3I CTNAG 1 cut(s) 452
Hsp92II CATG 4 cut(s) 13, 146, 680, 757
HspAI GCGC 1 cut(s) 92
Kpn2I TCCGGA 1 cut(s) 497
Kzo9I GATC 2 cut(s) 717, 769
LmnI GCTCC 1 cut(s) 304
LweI GCATC 3 cut(s) 30, 67, 223
MaeI CTAG 1 cut(s) 405
MaeIII GTNAC 3 cut(s) 698, 734, 760
MalI GATC 2 cut(s) 719, 771
MboI GATC 2 cut(s) 717, 769
MboII GAAGA 3 cut(s) 166, 284, 727
MhlI GDGCHC 2 cut(s) 366, 458
MluCI AATT 6 cut(s) 30, 95, 146, 218, 321, 785
MmeI TCCRAC 2 cut(s) 243, 247
MroI TCCGGA 1 cut(s) 497
MseI TTAA 1 cut(s) 102
MspI CCGG 5 cut(s) 278, 498, 569, 612, 634
MspR9I CCNGG 3 cut(s) 279, 593, 613
MvaI CCWGG 1 cut(s) 593
MwoI GCNNNNNNNGC 3 cut(s) 523, 565, 686
NciI CCSGG 2 cut(s) 279, 613
NdeII GATC 2 cut(s) 717, 769
NlaIII CATG 4 cut(s) 13, 146, 680, 757
NlaIV GGNNCC 4 cut(s) 364, 573, 610, 646
NmuCI GTSAC 2 cut(s) 734, 760
NsbI TGCGCA 1 cut(s) 93
NspI RCATGY 2 cut(s) 13, 680
PaeI GCATGC 2 cut(s) 13, 680
PcsI WCGNNNNNNNCGW 1 cut(s) 680
PfeI GAWTC 1 cut(s) 266
PflMI CCANNNNNTGG 1 cut(s) 398
PkrI GCNGC 1 cut(s) 474
PpuMI RGGWCCY 1 cut(s) 645
Psp5II RGGWCCY 1 cut(s) 645
Psp6I CCWGG 1 cut(s) 591
PspGI CCWGG 1 cut(s) 591
PspN4I GGNNCC 4 cut(s) 364, 573, 610, 646
PspOMI GGGCCC 1 cut(s) 362
PspPI GGNCC 8 cut(s) 362, 363, 401, 500, 571, 609, 636, 645
PspPPI RGGWCCY 1 cut(s) 645
Rsr2I CGGWCCG 1 cut(s) 500
RsrII CGGWCCG 1 cut(s) 500
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 1 cut(s) 473
Sau3AI GATC 2 cut(s) 717, 769
Sau96I GGNCC 8 cut(s) 362, 363, 401, 500, 571, 609, 636, 645
ScrFI CCNGG 3 cut(s) 279, 593, 613
SduI GDGCHC 2 cut(s) 366, 458
SetI ASST 5 cut(s) 165, 242, 301, 340, 484
SfaNI GCATC 3 cut(s) 30, 67, 223
SinI GGWCC 4 cut(s) 500, 571, 609, 645
SphI GCATGC 2 cut(s) 13, 680
Sse9I AATT 6 cut(s) 30, 95, 146, 218, 321, 785
SsiI CCGC 5 cut(s) 470, 473, 503, 515, 530
SspI AATATT 1 cut(s) 214
SspMI CTAG 1 cut(s) 405
StyD4I CCNGG 3 cut(s) 277, 591, 611
TaaI ACNGT 5 cut(s) 228, 261, 495, 565, 766
TaqI TCGA 1 cut(s) 231
TasI AATT 6 cut(s) 30, 95, 146, 218, 321, 785
TauI GCSGC 1 cut(s) 475
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TscAI CASTG 1 cut(s) 570
TseFI GTSAC 2 cut(s) 734, 760
Tsp45I GTSAC 2 cut(s) 734, 760
TspDTI ATGAA 1 cut(s) 159
TspGWI ACGGA 1 cut(s) 298
TspRI CASTG 1 cut(s) 570
Van91I CCANNNNNTGG 1 cut(s) 398
VpaK11BI GGWCC 4 cut(s) 500, 571, 609, 645
XapI RAATTY 2 cut(s) 218, 785
XceI RCATGY 2 cut(s) 13, 680
XspI CTAG 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.