Rh2AG500400

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0012900
Physical Location & Seq
Reverse (-)
72340895 .. 72345945
5051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG500400.1

Sequence Viewer

Length: 729 bp
ATGAATTGTTTTAGAACAGATGCAAGAAGTTTATCCCAAACCCAGAAAGCAGAACAACACAGAAGTACCACTCAAATACTGAAGAAGCTGAAAGTAACAAACCACATAGACATACCAGTAGTACAAGCCAGCCCTCCATTTTCTTCTCCACCTTCTGTTTCACCAGCACCAAACCCATTGCCTACTGCAACCGTCCCTTCTAATCTTCCCTATTGTGTAAATCCACAACCACCACCTACTATTTTATCTCCCACATACCCACCTCAAAATGGGCCTAGCCCACACCAACCCTGCATCATTCTAAGCCCACCCAACAATAACCCAACCCAACCCAACATTCCTCTAAGCCCACCCATAAGTCCTCTAAGCCCACCAGCAGTCAATCCCTCCCCTACAGTCAACTCCCCACCACCAACTGGACCCAAAAACACTCCTCCACACACAAAGCCCCAGTCTGGAGTGTGGTGTGTGGCCAAGCCGACTGTGCCCGACCCGATAGTCCAAGCGGCCATGGACTATGCGTGCGGGTCGGGCGCGGACTGCAAGTCAATTCAGCCCAACGGGTCGTGCTACCATCCCGAGACGTTGCTCTCCCATGCGTCGTATGCGTTCAACAATTACTGGCAGAGAAGGAAGGTGGCCGGAGGGACTTGTGATTTTGGAGGGACAGCGATGCTGGTCACTGCTGATCCAAGTTTTGATGGATGCCAGTTCTTCTACAATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

242

Amino Acids

25.73

Weight (kDa)

8.58

Isoelectric Point (pI)

68.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 155 - 225 7.4e-23 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012900)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04910 AT2G04910
malus_domestica MD09G1143600.v1.1 MD17G1129900.v1.1
prunus_persica Prupe.3G184100_v2.0.a1
pyrus_communis pycom09g06310 pycom17g12250 pycom17g12270
rosa_chinensis RchiOBHm_Chr2g0153201
rosa_laevigata RLG00000020685
rosa_multiflora Rmu_sc0000442.1_g000001
rosa_roxburghii Rroxscaffold_2G00095100
rosa_rugosa Rorug02G0437500
rosa_samantha Rh2AG500400 Rh2BG511800 Rh2CG486600 Rh2DG523800
rosa_wichuraiana Rw2G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 497
AccB7I CCANNNNNTGG 1 cut(s) 416
AccII CGCG 1 cut(s) 536
AciI CCGC 3 cut(s) 506, 525, 536
AclWI GGATC 1 cut(s) 683
AcoI YGGCCR 3 cut(s) 471, 507, 639
AcuI CTGAAG 1 cut(s) 101
AfaI GTAC 2 cut(s) 67, 123
AfiI CCNNNNNNNGG 3 cut(s) 269, 416, 455
AgsI TTSAA 1 cut(s) 613
AhdI GACNNNNNGTC 1 cut(s) 544
AjuI GAANNNNNNNTTGG 2 cut(s) 321, 353
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
Alw26I GTCTC 1 cut(s) 575
AlwI GGATC 1 cut(s) 683
Ama87I CYCGRG 1 cut(s) 578
AoxI GGCC 4 cut(s) 272, 471, 507, 639
ArsI GACNNNNNNTTYG 2 cut(s) 437, 469
AspLEI GCGC 1 cut(s) 536
AspS9I GGNCC 2 cut(s) 272, 419
AsuHPI GGTGA 1 cut(s) 153
AvaI CYCGRG 1 cut(s) 578
AvaII GGWCC 1 cut(s) 419
BaeGI GKGCMC 1 cut(s) 489
BaeI ACNNNNGTAYC 2 cut(s) 49, 82
BalI TGGCCA 1 cut(s) 473
BccI CCATC 2 cut(s) 582, 695
BcoDI GTCTC 1 cut(s) 575
BfaI CTAG 1 cut(s) 276
BfmI CTRYAG 1 cut(s) 393
BisI GCNGC 1 cut(s) 507
BlsI GCNGC 1 cut(s) 508
Bme18I GGWCC 1 cut(s) 419
BmeRI GACNNNNNGTC 1 cut(s) 544
BmeT110I CYCGRG 1 cut(s) 578
BmgT120I GGNCC 2 cut(s) 272, 419
BmiI GGNNCC 1 cut(s) 421
BmrI ACTGGG 1 cut(s) 445
BmsI GCATC 4 cut(s) 10, 303, 663, 695
BmuI ACTGGG 1 cut(s) 445
BpmI CTGGAG 1 cut(s) 477
BsaJI CCNNGG 1 cut(s) 510
Bsc4I CCNNNNNNNGG 3 cut(s) 269, 416, 455
Bse1I ACTGG 5 cut(s) 116, 421, 451, 626, 709
Bse3DI GCAATG 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 510
BseGI GGATG 2 cut(s) 574, 710
BseLI CCNNNNNNNGG 3 cut(s) 269, 416, 455
BseMI GCAATG 1 cut(s) 176
BseNI ACTGG 5 cut(s) 116, 421, 451, 626, 709
BseRI GAGGAG 1 cut(s) 423
BseSI GKGCMC 1 cut(s) 489
Bsh1236I CGCG 1 cut(s) 536
BshFI GGCC 4 cut(s) 274, 473, 509, 641
BsiHKCI CYCGRG 1 cut(s) 578
BsiSI CCGG 1 cut(s) 642
BslFI GGGAC 3 cut(s) 179, 661, 679
BslI CCNNNNNNNGG 3 cut(s) 269, 416, 455
BsmAI GTCTC 1 cut(s) 575
BsmBI CGTCTC 1 cut(s) 575
BsmFI GGGAC 3 cut(s) 179, 661, 679
BsnI GGCC 4 cut(s) 274, 473, 509, 641
BsoBI CYCGRG 1 cut(s) 578
Bsp1286I GDGCHC 1 cut(s) 489
Bsp143I GATC 1 cut(s) 688
Bsp19I CCATGG 1 cut(s) 510
BspACI CCGC 3 cut(s) 506, 525, 536
BspANI GGCC 4 cut(s) 274, 473, 509, 641
BspFNI CGCG 1 cut(s) 536
BspLI GGNNCC 1 cut(s) 421
BspPI GGATC 1 cut(s) 683
BsrDI GCAATG 1 cut(s) 176
BsrI ACTGG 5 cut(s) 116, 421, 451, 626, 709
BssECI CCNNGG 1 cut(s) 510
BssMI GATC 1 cut(s) 688
BssT1I CCWWGG 1 cut(s) 510
Bst4CI ACNGT 3 cut(s) 193, 397, 484
BstC8I GCNNGC 2 cut(s) 130, 523
BstDEI CTNAG 3 cut(s) 302, 344, 365
BstDSI CCRYGG 1 cut(s) 510
BstF5I GGATG 2 cut(s) 574, 710
BstFNI CGCG 1 cut(s) 536
BstHHI GCGC 1 cut(s) 536
BstKTI GATC 1 cut(s) 691
BstMAI GTCTC 1 cut(s) 575
BstMBI GATC 1 cut(s) 688
BstMWI GCNNNNNNNGC 4 cut(s) 484, 531, 540, 605
BstSFI CTRYAG 1 cut(s) 393
BstSLI GKGCMC 1 cut(s) 489
BstUI CGCG 1 cut(s) 536
BsuRI GGCC 4 cut(s) 274, 473, 509, 641
BtgI CCRYGG 1 cut(s) 510
BtgZI GCGATG 1 cut(s) 686
BtsCI GGATG 2 cut(s) 574, 710
BtsI GCAGTG 1 cut(s) 681
BtsIMutI CAGTG 1 cut(s) 681
Cac8I GCNNGC 2 cut(s) 130, 523
CfoI GCGC 1 cut(s) 536
Cfr13I GGNCC 2 cut(s) 272, 419
CseI GACGC 1 cut(s) 588
Csp6I GTAC 2 cut(s) 66, 122
CviAII CATG 2 cut(s) 511, 596
CviQI GTAC 2 cut(s) 66, 122
DdeI CTNAG 3 cut(s) 302, 344, 365
DpnI GATC 1 cut(s) 690
DpnII GATC 1 cut(s) 688
DrdI GACNNNNNNGTC 1 cut(s) 497
DriI GACNNNNNGTC 1 cut(s) 544
DseDI GACNNNNNNGTC 1 cut(s) 497
EaeI YGGCCR 3 cut(s) 471, 507, 639
Eam1105I GACNNNNNGTC 1 cut(s) 544
Eco130I CCWWGG 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 419
Eco57I CTGAAG 1 cut(s) 101
Eco88I CYCGRG 1 cut(s) 578
EcoT14I CCWWGG 1 cut(s) 510
ErhI CCWWGG 1 cut(s) 510
Esp3I CGTCTC 1 cut(s) 575
FaeI CATG 2 cut(s) 514, 599
FaiI YATR 8 cut(s) 107, 113, 256, 356, 512, 519, 597, 606
FaqI GGGAC 3 cut(s) 179, 661, 679
FatI CATG 2 cut(s) 510, 595
FauI CCCGC 1 cut(s) 518
Fnu4HI GCNGC 1 cut(s) 507
FokI GGATG 2 cut(s) 561, 717
Fsp4HI GCNGC 1 cut(s) 507
FspBI CTAG 1 cut(s) 276
GlaI GCGC 1 cut(s) 535
GluI GCNGC 1 cut(s) 507
GsuI CTGGAG 1 cut(s) 477
HaeIII GGCC 4 cut(s) 274, 473, 509, 641
HapII CCGG 1 cut(s) 642
HgaI GACGC 1 cut(s) 588
HhaI GCGC 1 cut(s) 536
Hin1II CATG 2 cut(s) 514, 599
Hin6I GCGC 1 cut(s) 534
HinP1I GCGC 1 cut(s) 534
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HpaII CCGG 1 cut(s) 642
HphI GGTGA 1 cut(s) 153
Hpy166II GTNNAC 1 cut(s) 400
Hpy188III TCNNGA 2 cut(s) 456, 578
Hpy8I GTNNAC 1 cut(s) 400
Hpy99I CGWCG 1 cut(s) 604
HpyAV CCTTC 4 cut(s) 162, 207, 624, 628
HpyCH4III ACNGT 3 cut(s) 193, 397, 484
HpyCH4IV ACGT 1 cut(s) 584
HpyCH4V TGCA 4 cut(s) 23, 188, 294, 543
HpyF10VI GCNNNNNNNGC 4 cut(s) 484, 531, 540, 605
HpyF3I CTNAG 3 cut(s) 302, 344, 365
HpySE526I ACGT 1 cut(s) 584
Hsp92II CATG 2 cut(s) 514, 599
HspAI GCGC 1 cut(s) 534
Kzo9I GATC 1 cut(s) 688
LweI GCATC 4 cut(s) 10, 303, 663, 695
MaeI CTAG 1 cut(s) 276
MaeII ACGT 1 cut(s) 584
MaeIII GTNAC 2 cut(s) 94, 679
MalI GATC 1 cut(s) 690
MboI GATC 1 cut(s) 688
MboII GAAGA 4 cut(s) 94, 135, 197, 706
MhlI GDGCHC 1 cut(s) 489
MlsI TGGCCA 1 cut(s) 473
MluCI AATT 3 cut(s) 4, 549, 616
MluNI TGGCCA 1 cut(s) 473
MnlI CCTC 8 cut(s) 144, 273, 351, 372, 397, 444, 638, 656
Mox20I TGGCCA 1 cut(s) 473
MscI TGGCCA 1 cut(s) 473
Msp20I TGGCCA 1 cut(s) 473
MspI CCGG 1 cut(s) 642
MvnI CGCG 1 cut(s) 536
MwoI GCNNNNNNNGC 4 cut(s) 484, 531, 540, 605
NcoI CCATGG 1 cut(s) 510
NdeII GATC 1 cut(s) 688
NlaIII CATG 2 cut(s) 514, 599
NlaIV GGNNCC 1 cut(s) 421
NmuCI GTSAC 1 cut(s) 679
PflMI CCANNNNNTGG 1 cut(s) 416
PkrI GCNGC 1 cut(s) 508
PspN4I GGNNCC 1 cut(s) 421
PspPI GGNCC 2 cut(s) 272, 419
RsaI GTAC 2 cut(s) 67, 123
RsaNI GTAC 2 cut(s) 66, 122
SatI GCNGC 1 cut(s) 507
Sau3AI GATC 1 cut(s) 688
Sau96I GGNCC 2 cut(s) 272, 419
SduI GDGCHC 1 cut(s) 489
SetI ASST 6 cut(s) 90, 154, 238, 265, 587, 639
SfaNI GCATC 4 cut(s) 10, 303, 663, 695
SfcI CTRYAG 1 cut(s) 393
SinI GGWCC 1 cut(s) 419
Sse9I AATT 3 cut(s) 4, 549, 616
SsiI CCGC 3 cut(s) 506, 525, 536
SspMI CTAG 1 cut(s) 276
StyI CCWWGG 1 cut(s) 510
TaaI ACNGT 3 cut(s) 193, 397, 484
TaiI ACGT 1 cut(s) 587
TasI AATT 3 cut(s) 4, 549, 616
TatI WGTACW 1 cut(s) 121
TauI GCSGC 1 cut(s) 509
TscAI CASTG 1 cut(s) 688
TseFI GTSAC 1 cut(s) 679
Tsp45I GTSAC 1 cut(s) 679
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 688
Van91I CCANNNNNTGG 1 cut(s) 416
VpaK11BI GGWCC 1 cut(s) 419
XspI CTAG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.