Rh2CG486600

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0012900
Physical Location & Seq
Reverse (-)
65309181 .. 65311231
2051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG486600.1

Sequence Viewer

Length: 366 bp
ATGGACTATGCGTGCGGGTCGGGCGCGGACTGCAAGTCAATTCAGCCCAACGGGTCGTGCTACCATCCCGAGACGTTGCTCTCCCATGCGTCGTATGCGTTCAACAATTACTGGCAGAGAAGGAAGGTGGCCGGAGGGACTTGTGATTTTGGAGGGACAGCGATGCTGGTCACTGCTGATCCAAGGAACAGAGACCACACGGCAACCATGACAAACTACACGTTAGGGAATCGGGACGATGATAAGGAACAAGTGGAGTGTTGGATAGAAAACCCAGATACGTTTACAGTTTTGATGGATGCCAGTTCTTCTACAATGGATGACTCAAGAGTCAAGAATGAGAATCCAATATATCGGATACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

121

Amino Acids

13.54

Weight (kDa)

4.83

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 1 - 55 4.3e-17 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012900)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04910 AT2G04910
malus_domestica MD09G1143600.v1.1 MD17G1129900.v1.1
prunus_persica Prupe.3G184100_v2.0.a1
pyrus_communis pycom09g06310 pycom17g12250 pycom17g12270
rosa_chinensis RchiOBHm_Chr2g0153201
rosa_laevigata RLG00000020685
rosa_multiflora Rmu_sc0000442.1_g000001
rosa_roxburghii Rroxscaffold_2G00095100
rosa_rugosa Rorug02G0437500
rosa_samantha Rh2AG500400 Rh2BG511800 Rh2CG486600 Rh2DG523800
rosa_wichuraiana Rw2G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 329
AccII CGCG 1 cut(s) 26
AciI CCGC 2 cut(s) 15, 26
AclWI GGATC 1 cut(s) 173
AcoI YGGCCR 1 cut(s) 129
AflIII ACRYGT 1 cut(s) 219
AgsI TTSAA 1 cut(s) 103
AhdI GACNNNNNGTC 1 cut(s) 34
Alw26I GTCTC 2 cut(s) 65, 186
AlwI GGATC 1 cut(s) 173
Ama87I CYCGRG 1 cut(s) 68
AoxI GGCC 1 cut(s) 129
AspLEI GCGC 1 cut(s) 26
AvaI CYCGRG 1 cut(s) 68
BccI CCATC 2 cut(s) 72, 289
BceAI ACGGC 1 cut(s) 216
BciVI GTATCC 1 cut(s) 351
BcoDI GTCTC 2 cut(s) 65, 186
BfuI GTATCC 1 cut(s) 351
BmeRI GACNNNNNGTC 1 cut(s) 34
BmeT110I CYCGRG 1 cut(s) 68
BmsI GCATC 2 cut(s) 153, 289
BpuEI CTTGAG 1 cut(s) 310
BsaI GGTCTC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 182
Bse1I ACTGG 2 cut(s) 116, 303
BseDI CCNNGG 1 cut(s) 182
BseGI GGATG 3 cut(s) 64, 304, 325
BseNI ACTGG 2 cut(s) 116, 303
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 1 cut(s) 131
BsiHKCI CYCGRG 1 cut(s) 68
BsiSI CCGG 1 cut(s) 132
BslFI GGGAC 3 cut(s) 151, 169, 248
BsmAI GTCTC 2 cut(s) 65, 186
BsmBI CGTCTC 1 cut(s) 65
BsmFI GGGAC 3 cut(s) 151, 169, 248
BsnI GGCC 1 cut(s) 131
Bso31I GGTCTC 1 cut(s) 186
BsoBI CYCGRG 1 cut(s) 68
Bsp143I GATC 1 cut(s) 178
BspACI CCGC 2 cut(s) 15, 26
BspANI GGCC 1 cut(s) 131
BspFNI CGCG 1 cut(s) 26
BspPI GGATC 1 cut(s) 173
BspTNI GGTCTC 1 cut(s) 186
BsrI ACTGG 2 cut(s) 116, 303
BssECI CCNNGG 1 cut(s) 182
BssMI GATC 1 cut(s) 178
BssT1I CCWWGG 1 cut(s) 182
Bst4CI ACNGT 1 cut(s) 289
BstC8I GCNNGC 1 cut(s) 13
BstF5I GGATG 3 cut(s) 64, 304, 325
BstFNI CGCG 1 cut(s) 26
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 1 cut(s) 181
BstMAI GTCTC 2 cut(s) 65, 186
BstMBI GATC 1 cut(s) 178
BstMWI GCNNNNNNNGC 3 cut(s) 21, 30, 95
BstUI CGCG 1 cut(s) 26
BsuI GTATCC 1 cut(s) 351
BsuRI GGCC 1 cut(s) 131
BtgZI GCGATG 1 cut(s) 176
BtsCI GGATG 3 cut(s) 64, 304, 325
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 13
CfoI GCGC 1 cut(s) 26
CseI GACGC 1 cut(s) 78
CviAII CATG 2 cut(s) 86, 208
CviJI RGCY 2 cut(s) 46, 131
CviKI_1 RGCY 2 cut(s) 46, 131
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
DrdI GACNNNNNNGTC 1 cut(s) 329
DriI GACNNNNNGTC 1 cut(s) 34
DseDI GACNNNNNNGTC 1 cut(s) 329
EaeI YGGCCR 1 cut(s) 129
Eam1105I GACNNNNNGTC 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 182
Eco31I GGTCTC 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 182
ErhI CCWWGG 1 cut(s) 182
Esp3I CGTCTC 1 cut(s) 65
FaeI CATG 2 cut(s) 89, 211
FaiI YATR 5 cut(s) 9, 87, 96, 209, 352
FaqI GGGAC 3 cut(s) 151, 169, 248
FatI CATG 2 cut(s) 85, 207
FauI CCCGC 1 cut(s) 8
FokI GGATG 3 cut(s) 51, 311, 332
GlaI GCGC 1 cut(s) 25
HaeIII GGCC 1 cut(s) 131
HapII CCGG 1 cut(s) 132
HgaI GACGC 1 cut(s) 78
HhaI GCGC 1 cut(s) 26
Hin1II CATG 2 cut(s) 89, 211
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HinfI GANTC 4 cut(s) 229, 323, 330, 343
HpaII CCGG 1 cut(s) 132
Hpy166II GTNNAC 1 cut(s) 285
Hpy188I TCNGA 1 cut(s) 357
Hpy188III TCNNGA 4 cut(s) 68, 233, 327, 334
Hpy8I GTNNAC 1 cut(s) 285
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 2 cut(s) 114, 118
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 3 cut(s) 74, 221, 281
HpyCH4V TGCA 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 30, 95
HpySE526I ACGT 3 cut(s) 74, 221, 281
Hsp92II CATG 2 cut(s) 89, 211
HspAI GCGC 1 cut(s) 24
Kzo9I GATC 1 cut(s) 178
LpnPI CCDG 5 cut(s) 97, 145, 152, 288, 316
LweI GCATC 2 cut(s) 153, 289
MaeII ACGT 3 cut(s) 74, 221, 281
MaeIII GTNAC 1 cut(s) 169
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 1 cut(s) 300
MluCI AATT 2 cut(s) 39, 106
MlyI GAGTC 2 cut(s) 317, 339
MmeI TCCRAC 1 cut(s) 242
MnlI CCTC 2 cut(s) 128, 146
MspI CCGG 1 cut(s) 132
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 3 cut(s) 21, 30, 95
NdeII GATC 1 cut(s) 178
NlaIII CATG 2 cut(s) 89, 211
NmuCI GTSAC 1 cut(s) 169
PfeI GAWTC 2 cut(s) 229, 343
PleI GAGTC 2 cut(s) 317, 338
PpsI GAGTC 2 cut(s) 317, 338
Sau3AI GATC 1 cut(s) 178
SchI GAGTC 2 cut(s) 317, 339
SetI ASST 4 cut(s) 77, 129, 224, 284
SfaNI GCATC 2 cut(s) 153, 289
SmlI CTYRAG 1 cut(s) 325
SmoI CTYRAG 1 cut(s) 325
Sse9I AATT 2 cut(s) 39, 106
SsiI CCGC 2 cut(s) 15, 26
StyI CCWWGG 1 cut(s) 182
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 3 cut(s) 77, 224, 284
TasI AATT 2 cut(s) 39, 106
TfiI GAWTC 2 cut(s) 229, 343
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 1 cut(s) 169
Tsp45I GTSAC 1 cut(s) 169
TspRI CASTG 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.