Prupe.3G184100_v2.0.a1

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012900
Physical Location & Seq
Reverse (-)
19912175 .. 19914417
2243 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G184100.1

Sequence Viewer

Length: 879 bp
ATGCAGCCCACAATGTCTTACATGAGATTGGCCATCATCTCCATTTCATTCACAACTTTCTCCATTTTATGTGATGCAAGAATTTTTGCACAATTCTTAAAATCCCAAGACACAGAATTAGAGAAGAAGCTGAAAGCAATAAATCACTTAGAGTTAGATTTACCATTGCCTTCCTCAAATGTTAAGCCACTAGAGGTAAGTCCTCCCTTCTCTTTCCCACCCTTTGATTCACTGGCACCACTTCCCTTGCCTGGAAATGTTCCTCTTCCTCCATACTGTGCAAATCCACCATTTTCCCAAAACCCACCTCAACCAAATACTCCTTCATCTTCCTCCTCCCCTTCATCTTCTGCACCCACTTGCTCACCCATCCCAAAACCACCACCTGCAAATGGGCCCACCCCTCACCCACCTGGCCCACCCACCACAATTCCAGGCCCACCCAAAAATCCTCCATCCCCACCCAAGCCTATCCCAGGCCCACCAGCCTTGGCCCCACCTGTAGCTTACCCTCCACCATCAGGGCCCACAAGCCCTCCACGAAAAAAGCCACCACAGTCTGGCGCGGTGTGGTGTGTGGCCAAGCCAGCCGTGCCTGGCCCAATAGTCCAAGAGGCCCTGGACTATGCGTGTGGGTCTGGTGCAGACTGCAAGTCAATCCAGCCCAATGGGTCCTGCTATAAACCAGACACATTGTTGTCCCACGCTTCGTACGCCTTCAACAGCTACTGGCAGAGCACCAGGGCTGCCGGTGGCACTTGTGATTTTGGAGGGACTGCCATGATTGTTACAGTTGATCCAAGTATGTCCAAATTTTGCCCCTTCTTATATAGTTTTAAATATAACACTCATGCTATAAGATATGATCTGACAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

293

Amino Acids

30.91

Weight (kDa)

8.68

Isoelectric Point (pI)

62.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012900)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04910 AT2G04910
malus_domestica MD09G1143600.v1.1 MD17G1129900.v1.1
prunus_persica Prupe.3G184100_v2.0.a1
pyrus_communis pycom09g06310 pycom17g12250 pycom17g12270
rosa_chinensis RchiOBHm_Chr2g0153201
rosa_laevigata RLG00000020685
rosa_multiflora Rmu_sc0000442.1_g000001
rosa_roxburghii Rroxscaffold_2G00095100
rosa_rugosa Rorug02G0437500
rosa_samantha Rh2AG500400 Rh2BG511800 Rh2CG486600 Rh2DG523800
rosa_wichuraiana Rw2G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 394
Acc36I ACCTGC 1 cut(s) 394
AccB1I GGYRCC 1 cut(s) 235
AccB7I CCANNNNNTGG 1 cut(s) 560
AccII CGCG 1 cut(s) 566
AciI CCGC 1 cut(s) 566
AclWI GGATC 1 cut(s) 791
AcoI YGGCCR 2 cut(s) 30, 579
AcsI RAATTY 2 cut(s) 81, 812
AfaI GTAC 1 cut(s) 713
AfiI CCNNNNNNNGG 5 cut(s) 251, 392, 476, 521, 560
AgsI TTSAA 1 cut(s) 721
AhdI GACNNNNNGTC 1 cut(s) 652
AjnI CCWGG 7 cut(s) 250, 412, 433, 475, 595, 618, 740
AjuI GAANNNNNNNTTGG 2 cut(s) 307, 339
AluBI AGCT 3 cut(s) 130, 506, 726
AluI AGCT 3 cut(s) 130, 506, 726
Alw21I GWGCWC 1 cut(s) 740
AlwI GGATC 1 cut(s) 791
AlwNI CAGNNNCTG 1 cut(s) 729
ApaI GGGCCC 2 cut(s) 399, 528
ApeKI GCWGC 2 cut(s) 4, 746
ApoI RAATTY 2 cut(s) 81, 812
AspLEI GCGC 1 cut(s) 566
AsuHPI GGTGA 2 cut(s) 357, 398
AvaII GGWCC 1 cut(s) 672
BaeGI GKGCMC 2 cut(s) 399, 528
BalI TGGCCA 2 cut(s) 32, 581
BanI GGYRCC 1 cut(s) 235
BanII GRGCYC 2 cut(s) 399, 528
Bbv12I GWGCWC 1 cut(s) 740
BbvI GCAGC 2 cut(s) 16, 733
BccI CCATC 4 cut(s) 41, 377, 463, 526
BceAI ACGGC 1 cut(s) 575
BciT130I CCWGG 7 cut(s) 252, 414, 435, 477, 597, 620, 742
BfaI CTAG 1 cut(s) 191
BfmI CTRYAG 1 cut(s) 501
BfuAI ACCTGC 1 cut(s) 394
BisI GCNGC 2 cut(s) 5, 747
BlsI GCNGC 2 cut(s) 6, 748
Bme1390I CCNGG 7 cut(s) 252, 414, 435, 477, 597, 620, 742
Bme18I GGWCC 1 cut(s) 672
BmeRI GACNNNNNGTC 1 cut(s) 652
BmiI GGNNCC 5 cut(s) 237, 397, 495, 526, 673
BmrFI CCNGG 7 cut(s) 252, 414, 435, 477, 597, 620, 742
BmsI GCATC 1 cut(s) 64
BsaJI CCNNGG 4 cut(s) 475, 489, 618, 741
BsaXI ACNNNNNCTCC 2 cut(s) 520, 550
Bsc4I CCNNNNNNNGG 5 cut(s) 251, 392, 476, 521, 560
Bse118I RCCGGY 1 cut(s) 749
Bse1I ACTGG 2 cut(s) 237, 734
Bse3DI GCAATG 1 cut(s) 164
BseBI CCWGG 7 cut(s) 252, 414, 435, 477, 597, 620, 742
BseDI CCNNGG 4 cut(s) 475, 489, 618, 741
BseGI GGATG 2 cut(s) 369, 455
BseLI CCNNNNNNNGG 5 cut(s) 251, 392, 476, 521, 560
BseMI GCAATG 1 cut(s) 164
BseNI ACTGG 2 cut(s) 237, 734
BseRI GAGGAG 1 cut(s) 325
BseSI GKGCMC 2 cut(s) 399, 528
BseXI GCAGC 2 cut(s) 16, 733
BsgI GTGCAG 2 cut(s) 336, 663
Bsh1236I CGCG 1 cut(s) 566
BshNI GGYRCC 1 cut(s) 235
BsiHKAI GWGCWC 1 cut(s) 740
BsiSI CCGG 1 cut(s) 750
BsiWI CGTACG 1 cut(s) 711
BslFI GGGAC 2 cut(s) 685, 787
BslI CCNNNNNNNGG 5 cut(s) 251, 392, 476, 521, 560
BsmFI GGGAC 2 cut(s) 685, 787
Bsp120I GGGCCC 2 cut(s) 395, 524
Bsp1286I GDGCHC 3 cut(s) 399, 528, 740
Bsp143I GATC 2 cut(s) 796, 865
BspACI CCGC 1 cut(s) 566
BspFNI CGCG 1 cut(s) 566
BspLI GGNNCC 5 cut(s) 237, 397, 495, 526, 673
BspMI ACCTGC 1 cut(s) 394
BspPI GGATC 1 cut(s) 791
BspT107I GGYRCC 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 164
BsrFI RCCGGY 1 cut(s) 749
BsrI ACTGG 2 cut(s) 237, 734
BssAI RCCGGY 1 cut(s) 749
BssECI CCNNGG 4 cut(s) 475, 489, 618, 741
BssMI GATC 2 cut(s) 796, 865
BssT1I CCWWGG 1 cut(s) 489
Bst2UI CCWGG 7 cut(s) 252, 414, 435, 477, 597, 620, 742
Bst4CI ACNGT 3 cut(s) 278, 558, 793
Bst6I CTCTTC 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 588
BstDEI CTNAG 1 cut(s) 148
BstENI CCTNNNNNAGG 1 cut(s) 474
BstF5I GGATG 2 cut(s) 369, 455
BstFNI CGCG 1 cut(s) 566
BstHHI GCGC 1 cut(s) 566
BstKTI GATC 2 cut(s) 799, 868
BstMBI GATC 2 cut(s) 796, 865
BstMWI GCNNNNNNNGC 3 cut(s) 587, 592, 713
BstNI CCWGG 7 cut(s) 252, 414, 435, 477, 597, 620, 742
BstSCI CCNGG 7 cut(s) 250, 412, 433, 475, 595, 618, 740
BstSFI CTRYAG 1 cut(s) 501
BstSLI GKGCMC 2 cut(s) 399, 528
BstUI CGCG 1 cut(s) 566
BstV1I GCAGC 2 cut(s) 16, 733
BstXI CCANNNNNNTGG 1 cut(s) 668
BtsCI GGATG 2 cut(s) 369, 455
BtsIMutI CAGTG 1 cut(s) 230
BveI ACCTGC 1 cut(s) 394
Cac8I GCNNGC 1 cut(s) 588
CaiI CAGNNNCTG 1 cut(s) 729
CfoI GCGC 1 cut(s) 566
Cfr10I RCCGGY 1 cut(s) 749
Csp6I GTAC 1 cut(s) 712
CspCI CAANNNNNGTGG 4 cut(s) 228, 263, 471, 506
CviAII CATG 3 cut(s) 22, 781, 851
CviQI GTAC 1 cut(s) 712
DdeI CTNAG 1 cut(s) 148
DpnI GATC 2 cut(s) 798, 867
DpnII GATC 2 cut(s) 796, 865
DraI TTTAAA 1 cut(s) 838
DriI GACNNNNNGTC 1 cut(s) 652
EaeI YGGCCR 2 cut(s) 30, 579
Eam1104I CTCTTC 1 cut(s) 270
Eam1105I GACNNNNNGTC 1 cut(s) 652
EarI CTCTTC 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 489
Eco24I GRGCYC 2 cut(s) 399, 528
Eco47I GGWCC 1 cut(s) 672
EcoNI CCTNNNNNAGG 1 cut(s) 474
EcoO109I RGGNCCY 3 cut(s) 524, 616, 672
EcoRII CCWGG 7 cut(s) 250, 412, 433, 475, 595, 618, 740
EcoT14I CCWWGG 1 cut(s) 489
EcoT38I GRGCYC 2 cut(s) 399, 528
ErhI CCWWGG 1 cut(s) 489
FaeI CATG 3 cut(s) 25, 784, 854
FaqI GGGAC 2 cut(s) 685, 787
FatI CATG 3 cut(s) 21, 780, 850
Fnu4HI GCNGC 2 cut(s) 5, 747
FokI GGATG 2 cut(s) 356, 442
FriOI GRGCYC 2 cut(s) 399, 528
Fsp4HI GCNGC 2 cut(s) 5, 747
FspBI CTAG 1 cut(s) 191
GlaI GCGC 1 cut(s) 565
GluI GCNGC 2 cut(s) 5, 747
HapII CCGG 1 cut(s) 750
HhaI GCGC 1 cut(s) 566
Hin1II CATG 3 cut(s) 25, 784, 854
Hin6I GCGC 1 cut(s) 564
HinP1I GCGC 1 cut(s) 564
HinfI GANTC 1 cut(s) 227
HpaII CCGG 1 cut(s) 750
HphI GGTGA 2 cut(s) 357, 398
Hpy188I TCNGA 1 cut(s) 870
HpyAV CCTTC 6 cut(s) 180, 217, 333, 351, 727, 832
HpyCH4III ACNGT 3 cut(s) 278, 558, 793
HpyCH4V TGCA 8 cut(s) 4, 77, 89, 281, 353, 389, 644, 651
HpyF10VI GCNNNNNNNGC 3 cut(s) 587, 592, 713
HpyF3I CTNAG 1 cut(s) 148
Hsp92II CATG 3 cut(s) 25, 784, 854
HspAI GCGC 1 cut(s) 564
Kzo9I GATC 2 cut(s) 796, 865
Lsp1109I GCAGC 2 cut(s) 16, 733
LweI GCATC 1 cut(s) 64
MaeI CTAG 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 787
MalI GATC 2 cut(s) 798, 867
MboI GATC 2 cut(s) 796, 865
MboII GAAGA 4 cut(s) 136, 257, 321, 339
MhlI GDGCHC 3 cut(s) 399, 528, 740
MlsI TGGCCA 2 cut(s) 32, 581
MluCI AATT 5 cut(s) 81, 92, 116, 429, 812
MluNI TGGCCA 2 cut(s) 32, 581
Mox20I TGGCCA 2 cut(s) 32, 581
MscI TGGCCA 2 cut(s) 32, 581
MseI TTAA 3 cut(s) 98, 183, 837
Msp20I TGGCCA 2 cut(s) 32, 581
MspI CCGG 1 cut(s) 750
MspR9I CCNGG 7 cut(s) 252, 414, 435, 477, 597, 620, 742
MvaI CCWGG 7 cut(s) 252, 414, 435, 477, 597, 620, 742
MvnI CGCG 1 cut(s) 566
MwoI GCNNNNNNNGC 3 cut(s) 587, 592, 713
NdeII GATC 2 cut(s) 796, 865
NlaIII CATG 3 cut(s) 25, 784, 854
NlaIV GGNNCC 5 cut(s) 237, 397, 495, 526, 673
PaqCI CACCTGC 1 cut(s) 394
PfeI GAWTC 1 cut(s) 227
Pfl23II CGTACG 1 cut(s) 711
PflMI CCANNNNNTGG 1 cut(s) 560
PkrI GCNGC 2 cut(s) 6, 748
PpuMI RGGWCCY 1 cut(s) 672
Psp5II RGGWCCY 1 cut(s) 672
Psp6I CCWGG 7 cut(s) 250, 412, 433, 475, 595, 618, 740
PspGI CCWGG 7 cut(s) 250, 412, 433, 475, 595, 618, 740
PspLI CGTACG 1 cut(s) 711
PspN4I GGNNCC 5 cut(s) 237, 397, 495, 526, 673
PspOMI GGGCCC 2 cut(s) 395, 524
PspPPI RGGWCCY 1 cut(s) 672
PstNI CAGNNNCTG 1 cut(s) 729
RsaI GTAC 1 cut(s) 713
RsaNI GTAC 1 cut(s) 712
SaqAI TTAA 3 cut(s) 98, 183, 837
SatI GCNGC 2 cut(s) 5, 747
Sau3AI GATC 2 cut(s) 796, 865
ScrFI CCNGG 7 cut(s) 252, 414, 435, 477, 597, 620, 742
SduI GDGCHC 3 cut(s) 399, 528, 740
SetI ASST 8 cut(s) 132, 198, 310, 388, 415, 502, 508, 728
SfaNI GCATC 1 cut(s) 64
SfcI CTRYAG 1 cut(s) 501
SinI GGWCC 1 cut(s) 672
Sse9I AATT 5 cut(s) 81, 92, 116, 429, 812
SsiI CCGC 1 cut(s) 566
SspMI CTAG 1 cut(s) 191
StyD4I CCNGG 7 cut(s) 250, 412, 433, 475, 595, 618, 740
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 3 cut(s) 278, 558, 793
TasI AATT 5 cut(s) 81, 92, 116, 429, 812
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 3 cut(s) 98, 183, 837
Tru9I TTAA 3 cut(s) 98, 183, 837
TscAI CASTG 1 cut(s) 237
TseI GCWGC 2 cut(s) 4, 746
TspDTI ATGAA 3 cut(s) 36, 315, 333
TspRI CASTG 1 cut(s) 237
Van91I CCANNNNNTGG 1 cut(s) 560
VpaK11BI GGWCC 1 cut(s) 672
XagI CCTNNNNNAGG 1 cut(s) 474
XapI RAATTY 2 cut(s) 81, 812
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.